Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001816.1

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Reverse (-)

9464 .. 10738

Gene Structure 1275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001816.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atggaatcagagaatacacaacattcccagattatcgagatccatggagatgctcctggtgaagagacgagtgtgggtgggagtaaaatttgtggggaagcaccatgtggactgtcggatgttggaccaaattctaaagattccaaagaacgatcagctgccatgcgcaagctcttgatagcagtggtactctgtgttctcttcatgggtgttgaagtgtttggtggcattgaagccaatagcttagcaatattgactgatgcagcacatttgctctctgatgttgcagcctttgccatctccttgttctccttgtgggctgctagctgggaaaccactcctcgtcagtcttacggctttttcaggattgagattctcggtgctttggtttctatccaactcatatggttgcttgctgggatattggtgtatgaagccattgttagaatgattaataacacatctgatgtgaatggttttctgatgtttcttgttgctgcatttggtctagtggttaatattggcatggctgtactgttaggccatgatcatggtcatgatcatggccacggccatggacatggtcatggccacggccacggccacggacatgatgatcatgatcatcacagccatggaatgacattttctactcatcatcaccatcaccatcaccatgaggaacactcgaatgacgagcaccatcatgatcatgaagaacactcgcatgatgaacaccatcacagtcatgatgatcataaacacaatggtgctgatgaaggtcatgctcatgagccactcttggacaagccaaaagacgggcatggccagaagaagcaacggaacataaacgtgcagggagcttaccttcatgttcttggggacttggttcaaagtatcggtgtaatgattggtggggccatcatatggtacaagccggaatggaagatagttgatttgatttgcaccctaatattttctgttattgttttggggacaactttcaagatgattaggaacatacttgatgtactaatggagagcacaccaagggagattgatgcaacgaaacttgagaaggggctattggagatgggagaagtggtggaaatccatgagctgcatatatgggcaatcacagttgggaaagtcctgctggcttgccatgtgaaaatcagacctgaagcaaatgcagacatggtgctgggcaaagtgattgattatatcagaagggagtacaacatcagccatgtgactatacaagttgagcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

424

Amino Acids

46.96

Weight (kDa)

5.92

Isoelectric Point (pI)

27.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	927
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	6 cut(s)	565, 571, 589, 595, 601, 826
AcsI	RAATTY	2 cut(s)	87, 130
AcuI	CTGAAG	1 cut(s)	1203
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	5 cut(s)	189, 534, 932, 1032, 1238
AfiI	CCNNNNNNNGG	2 cut(s)	818, 927
AgsI	TTSAA	4 cut(s)	215, 233, 893, 1006
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	1070, 1102
AleI	CACNNNNGTG	1 cut(s)	768
AluBI	AGCT	6 cut(s)	158, 172, 243, 327, 863, 1120
AluI	AGCT	6 cut(s)	158, 172, 243, 327, 863, 1120
Alw21I	GWGCWC	2 cut(s)	702, 1046
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	8 cut(s)	541, 565, 571, 589, 595, 601, 826, 918
ApeKI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1120
ApoI	RAATTY	2 cut(s)	87, 130
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	125, 918
AsuHPI	GGTGA	4 cut(s)	71, 653, 659, 665
AsuNHI	GCTAGC	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	3 cut(s)	567, 591, 828
Bbv12I	GWGCWC	2 cut(s)	702, 1046
BbvI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1107
BccI	CCATC	7 cut(s)	305, 672, 678, 711, 747, 929, 1087
BceAI	ACGGC	4 cut(s)	370, 586, 610, 616
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	6 cut(s)	547, 559, 616, 622, 709, 754
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	324, 509
BisI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1121
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1122
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	125, 918
BmiI	GGNNCC	1 cut(s)	919
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	3 cut(s)	40, 250, 1051
BmtI	GCTAGC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	671, 703
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	1094
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	8 cut(s)	43, 568, 574, 592, 598, 604, 634, 1049
BsaXI	ACNNNNNCTCC	2 cut(s)	1089, 1119
Bsc4I	CCNNNNNNNGG	2 cut(s)	818, 927
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	8 cut(s)	43, 568, 574, 592, 598, 604, 634, 1049
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	818, 927
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1107
BseYI	CCCAGC	3 cut(s)	327, 416, 1204
BsgI	GTGCAG	1 cut(s)	875
BshFI	GGCC	8 cut(s)	543, 567, 573, 591, 597, 603, 828, 920
BsiHKAI	GWGCWC	2 cut(s)	702, 1046
BsiSI	CCGG	1 cut(s)	938
BslFI	GGGAC	2 cut(s)	896, 1009
BslI	CCNNNNNNNGG	2 cut(s)	818, 927
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	896, 1009
BsnI	GGCC	8 cut(s)	543, 567, 573, 591, 597, 603, 828, 920
Bsp1286I	GDGCHC	2 cut(s)	702, 1046
Bsp143I	GATC	8 cut(s)	39, 152, 547, 559, 616, 622, 709, 754
Bsp1720I	GCTNAGC	1 cut(s)	244
Bsp19I	CCATGG	3 cut(s)	43, 574, 634
BspANI	GGCC	8 cut(s)	543, 567, 573, 591, 597, 603, 828, 920
BspHI	TCATGA	6 cut(s)	556, 619, 706, 712, 748, 790
BspLI	GGNNCC	1 cut(s)	919
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	8 cut(s)	43, 568, 574, 592, 598, 604, 634, 1049
BssMI	GATC	8 cut(s)	39, 152, 547, 559, 616, 622, 709, 754
BssT1I	CCWWGG	4 cut(s)	43, 574, 634, 1049
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	4 cut(s)	114, 537, 746, 1141
Bst6I	CTCTTC	2 cut(s)	57, 206
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	5 cut(s)	170, 325, 414, 1158, 1162
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	7 cut(s)	43, 568, 574, 592, 598, 604, 634
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	8 cut(s)	42, 155, 550, 562, 619, 625, 712, 757
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	8 cut(s)	39, 152, 547, 559, 616, 622, 709, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1107
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	3 cut(s)	551, 575, 581
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	8 cut(s)	543, 567, 573, 591, 597, 603, 828, 920
BtgI	CCRYGG	7 cut(s)	43, 568, 574, 592, 598, 604, 634
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	170, 325, 414, 1158, 1162
CciI	TCATGA	6 cut(s)	556, 619, 706, 712, 748, 790
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	125, 918
Csp6I	GTAC	5 cut(s)	188, 533, 931, 1031, 1237
CviQI	GTAC	5 cut(s)	188, 533, 931, 1031, 1237
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	8 cut(s)	41, 154, 549, 561, 618, 624, 711, 756
DpnII	GATC	8 cut(s)	39, 152, 547, 559, 616, 622, 709, 754
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	6 cut(s)	565, 571, 589, 595, 601, 826
Eam1104I	CTCTTC	2 cut(s)	57, 206
EarI	CTCTTC	2 cut(s)	57, 206
Eco130I	CCWWGG	4 cut(s)	43, 574, 634, 1049
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	1203
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	4 cut(s)	43, 574, 634, 1049
ErhI	CCWWGG	4 cut(s)	43, 574, 634, 1049
Esp3I	CGTCTC	1 cut(s)	59
FaqI	GGGAC	2 cut(s)	896, 1009
FauNDI	CATATG	2 cut(s)	404, 926
FbaI	TGATCA	6 cut(s)	547, 559, 616, 622, 709, 754
Fnu4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1121
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1121
FspBI	CTAG	2 cut(s)	324, 509
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1121
GsaI	CCCAGC	3 cut(s)	331, 420, 1208
HaeIII	GGCC	8 cut(s)	543, 567, 573, 591, 597, 603, 828, 920
HapII	CCGG	1 cut(s)	938
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	5, 140, 373
HpaII	CCGG	1 cut(s)	938
HphI	GGTGA	4 cut(s)	71, 653, 659, 665
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	7 cut(s)	10, 118, 280, 466, 483, 1178, 1229
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	773, 878, 1072, 1224
HpyCH4III	ACNGT	4 cut(s)	114, 537, 746, 1141
HpyCH4IV	ACGT	1 cut(s)	852
HpyCH4V	TGCA	8 cut(s)	263, 287, 500, 856, 966, 1064, 1123, 1193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	852
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	6 cut(s)	547, 559, 616, 622, 709, 754
Kzo9I	GATC	8 cut(s)	39, 152, 547, 559, 616, 622, 709, 754
LmnI	GCTCC	2 cut(s)	58, 860
Lsp1109I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1107
LweI	GCATC	3 cut(s)	40, 250, 1051
MaeI	CTAG	2 cut(s)	324, 509
MaeII	ACGT	1 cut(s)	852
MaeIII	GTNAC	1 cut(s)	1252
MalI	GATC	8 cut(s)	41, 154, 549, 561, 618, 624, 711, 756
MboI	GATC	8 cut(s)	39, 152, 547, 559, 616, 622, 709, 754
MboII	GAAGA	5 cut(s)	74, 193, 728, 844, 958
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	702, 1046
MlsI	TGGCCA	3 cut(s)	567, 591, 828
MluCI	AATT	2 cut(s)	87, 130
MluNI	TGGCCA	3 cut(s)	567, 591, 828
MmeI	TCCRAC	3 cut(s)	96, 103, 421
MnlI	CCTC	2 cut(s)	351, 673
Mox20I	TGGCCA	3 cut(s)	567, 591, 828
MscI	TGGCCA	3 cut(s)	567, 591, 828
MseI	TTAA	3 cut(s)	453, 516, 1273
Msp20I	TGGCCA	3 cut(s)	567, 591, 828
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	938
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	3 cut(s)	43, 574, 634
NdeI	CATATG	2 cut(s)	404, 926
NdeII	GATC	8 cut(s)	39, 152, 547, 559, 616, 622, 709, 754
NheI	GCTAGC	1 cut(s)	323
NlaIV	GGNNCC	1 cut(s)	919
NmuCI	GTSAC	1 cut(s)	1252
NsbI	TGCGCA	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	768
PagI	TCATGA	6 cut(s)	556, 619, 706, 712, 748, 790
PfeI	GAWTC	3 cut(s)	5, 140, 373
PflFI	GACNNNGTC	1 cut(s)	582
PflMI	CCANNNNNTGG	1 cut(s)	927
PkrI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1122
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	3 cut(s)	327, 416, 1204
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	919
PspPI	GGNCC	2 cut(s)	125, 918
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	5 cut(s)	189, 534, 932, 1032, 1238
RsaNI	GTAC	5 cut(s)	188, 533, 931, 1031, 1237
SaqAI	TTAA	3 cut(s)	453, 516, 1273
SatI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1121
Sau3AI	GATC	8 cut(s)	39, 152, 547, 559, 616, 622, 709, 754
Sau96I	GGNCC	2 cut(s)	125, 918
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	702, 1046
SfaNI	GCATC	3 cut(s)	40, 250, 1051
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	1073
SmoI	CTYRAG	1 cut(s)	1073
Sse9I	AATT	2 cut(s)	87, 130
SspI	AATATT	3 cut(s)	252, 520, 975
SspMI	CTAG	2 cut(s)	324, 509
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	4 cut(s)	43, 574, 634, 1049
TaaI	ACNGT	4 cut(s)	114, 537, 746, 1141
TaiI	ACGT	1 cut(s)	855
TaqI	TCGA	2 cut(s)	36, 689
TasI	AATT	2 cut(s)	87, 130
TatI	WGTACW	3 cut(s)	532, 1030, 1236
TfiI	GAWTC	3 cut(s)	5, 140, 373
Tru1I	TTAA	3 cut(s)	453, 516, 1273
Tru9I	TTAA	3 cut(s)	453, 516, 1273
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	1252
TseI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1120
Tsp45I	GTSAC	1 cut(s)	1252
TspDTI	ATGAA	6 cut(s)	193, 447, 729, 747, 792, 860
TspGWI	ACGGA	2 cut(s)	621, 856
TspRI	CASTG	1 cut(s)	189
Tth111I	GACNNNGTC	1 cut(s)	582
Van91I	CCANNNNNTGG	1 cut(s)	927
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	2 cut(s)	87, 130
XspI	CTAG	2 cut(s)	324, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.