Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

14999222 .. 15002529

Gene Structure 3308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAATCGGAGAATCCACAACATTCCCAGATTATTGAGATCCATGGAGATATTTCTGGTGGAGAGACGAGTGTGGGTGGGAGTAAAATTTGTGGAGAAGCACCATGTGGACTATCGGATGTTGGACCGAACTCTAAAGATTCCAAAGAACGATCAACTGCCATGCGCAAGCTCTTGATAGCAGTGGTACTTTGTGTTCTCTTCATGGGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCACATTTGCTCTCCGATGTTGCAGCCTTTGCCATCTCCTTGTTCTCCCTGTGGGCTGCTGGCTGGGAAGCAACTCCTCGTCAGTCTTACGGCTTTTTCAGGATTGAGATTCTTGGTGCTCTTGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTCAGAATGATTTCTAACACATCTGAGGTGAATGGTTTTTTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGCCATGATCACGGTCATGATCACGGTCATGGCCATGGACATGATGATCATGATCATCACAGCCATGGAATGACAATATCTACTCATCATCATCACCACCATGAGGAACACTCGAATGATGAGCACCATCATGATCATGAAAAACACTCACATGATGAACACCGTCACAGTCATGATGATCATAAACACAATGATGCTGAGGAAGGTCAAGCTCATGAGCCACTCTTAGACAAGCCAAAAGATGGGGATGGACAAAAGAAGCAACGGAACATAAACGTGCAAGGAGCTTACCTTCATGTTCTTGGGGACTCTGTTCAAAGTATCGGTGTAATGATTGGTGGGGCTATCATATGGTACAAGCCGGAATGGAAGATAGTTGATTTAATTTGTACCCTTGTATTTTCTGTTATTGTTTTAGGAACAACTGTCAGGATGATGAGGAACATACTCGATGTACTAATGGAGAGCACACCAAGAGAGATTGATGCAACGAAACTTGAGAAGGGGCTGTTGGAGATGGAAGAGGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTCGGGAAAGTCCTGCTGGCTTGCCATGTGAAAGTCAGACCAGAAGCAAATGCAGACATGGTGCTGGAAAAAGTGATTGATTATATCAGGAGGGAGTACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

413

Amino Acids

45.74

Weight (kDa)

5.71

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 334	6e-37	Cation efflux transmembrane domain
ZT_dimer	PF16916	338 - 411	5.1e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	782
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	6 cut(s)	189, 534, 896, 931, 996, 1202
AfiI	CCNNNNNNNGG	2 cut(s)	643, 782
AgsI	TTSAA	3 cut(s)	215, 233, 857
AjuI	GAANNNNNNNTTGG	2 cut(s)	1034, 1066
AluBI	AGCT	5 cut(s)	172, 243, 752, 827, 1084
AluI	AGCT	5 cut(s)	172, 243, 752, 827, 1084
Alw21I	GWGCWC	3 cut(s)	385, 666, 1010
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	2 cut(s)	541, 571
ApeKI	GCWGC	5 cut(s)	263, 287, 320, 497, 1084
ApoI	RAATTY	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	481, 626
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	573
Bbv12I	GWGCWC	3 cut(s)	385, 666, 1010
BbvCI	CCTCAGC	1 cut(s)	738
BbvI	GCAGC	5 cut(s)	275, 299, 307, 484, 1071
BccI	CCATC	5 cut(s)	305, 675, 776, 782, 1051
BceAI	ACGGC	1 cut(s)	370
BclI	TGATCA	6 cut(s)	547, 559, 586, 592, 673, 718
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	509
BisI	GCNGC	5 cut(s)	264, 288, 321, 498, 1085
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	5 cut(s)	265, 289, 322, 499, 1086
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmsI	GCATC	3 cut(s)	250, 724, 1015
BplI	GAGNNNNNCTC	2 cut(s)	635, 667
Bpu10I	CCTNAGC	1 cut(s)	738
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	1058
BsaBI	GATNNNNATC	1 cut(s)	591
BsaJI	CCNNGG	3 cut(s)	43, 574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 782
Bse8I	GATNNNNATC	1 cut(s)	591
BseDI	CCNNGG	3 cut(s)	43, 574, 604
BseGI	GGATG	3 cut(s)	124, 793, 978
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	2 cut(s)	643, 782
BseMII	CTCAG	2 cut(s)	456, 729
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	5 cut(s)	275, 299, 307, 484, 1071
BseYI	CCCAGC	2 cut(s)	327, 416
BshFI	GGCC	2 cut(s)	543, 573
BsiHKAI	GWGCWC	3 cut(s)	385, 666, 1010
BsiSI	CCGG	1 cut(s)	902
BslFI	GGGAC	1 cut(s)	860
BslI	CCNNNNNNNGG	2 cut(s)	643, 782
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	860
BsnI	GGCC	2 cut(s)	543, 573
Bsp1286I	GDGCHC	3 cut(s)	385, 666, 1010
Bsp143I	GATC	8 cut(s)	39, 152, 547, 559, 586, 592, 673, 718
Bsp1720I	GCTNAGC	1 cut(s)	244
Bsp19I	CCATGG	3 cut(s)	43, 574, 604
BspANI	GGCC	2 cut(s)	543, 573
BspCNI	CTCAG	2 cut(s)	457, 730
BspHI	TCATGA	6 cut(s)	556, 589, 670, 676, 712, 754
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	3 cut(s)	43, 574, 604
BssMI	GATC	8 cut(s)	39, 152, 547, 559, 586, 592, 673, 718
BssT1I	CCWWGG	3 cut(s)	43, 574, 604
Bst4CI	ACNGT	7 cut(s)	537, 554, 566, 704, 710, 967, 1105
Bst6I	CTCTTC	2 cut(s)	206, 1056
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	5 cut(s)	170, 325, 414, 1122, 1126
BstDEI	CTNAG	4 cut(s)	244, 465, 738, 766
BstDSI	CCRYGG	3 cut(s)	43, 574, 604
BstF5I	GGATG	3 cut(s)	124, 793, 978
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	8 cut(s)	42, 155, 550, 562, 589, 595, 676, 721
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	8 cut(s)	39, 152, 547, 559, 586, 592, 673, 718
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstV1I	GCAGC	5 cut(s)	275, 299, 307, 484, 1071
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	543, 573
BtgI	CCRYGG	3 cut(s)	43, 574, 604
BtsCI	GGATG	3 cut(s)	124, 793, 978
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	170, 325, 414, 1122, 1126
CciI	TCATGA	6 cut(s)	556, 589, 670, 676, 712, 754
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	6 cut(s)	188, 533, 895, 930, 995, 1201
CviQI	GTAC	6 cut(s)	188, 533, 895, 930, 995, 1201
DdeI	CTNAG	4 cut(s)	244, 465, 738, 766
DpnI	GATC	8 cut(s)	41, 154, 549, 561, 588, 594, 675, 720
DpnII	GATC	8 cut(s)	39, 152, 547, 559, 586, 592, 673, 718
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	2 cut(s)	206, 1056
EarI	CTCTTC	2 cut(s)	206, 1056
Eco130I	CCWWGG	3 cut(s)	43, 574, 604
Eco47I	GGWCC	1 cut(s)	125
EcoT14I	CCWWGG	3 cut(s)	43, 574, 604
ErhI	CCWWGG	3 cut(s)	43, 574, 604
Esp3I	CGTCTC	1 cut(s)	59
FaqI	GGGAC	1 cut(s)	860
FauNDI	CATATG	2 cut(s)	404, 890
FbaI	TGATCA	6 cut(s)	547, 559, 586, 592, 673, 718
Fnu4HI	GCNGC	5 cut(s)	264, 288, 321, 498, 1085
FokI	GGATG	3 cut(s)	131, 800, 985
Fsp4HI	GCNGC	5 cut(s)	264, 288, 321, 498, 1085
FspBI	CTAG	1 cut(s)	509
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	5 cut(s)	264, 288, 321, 498, 1085
GsaI	CCCAGC	2 cut(s)	331, 420
HaeIII	GGCC	2 cut(s)	543, 573
HapII	CCGG	1 cut(s)	902
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	5 cut(s)	5, 13, 140, 373, 848
HpaII	CCGG	1 cut(s)	902
HphI	GGTGA	2 cut(s)	481, 626
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	6 cut(s)	10, 118, 280, 446, 466, 1142
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	737, 842, 1036
HpyCH4III	ACNGT	7 cut(s)	537, 554, 566, 704, 710, 967, 1105
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	7 cut(s)	263, 287, 500, 820, 1028, 1087, 1157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	4 cut(s)	244, 465, 738, 766
HpySE526I	ACGT	1 cut(s)	816
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	6 cut(s)	547, 559, 586, 592, 673, 718
Kzo9I	GATC	8 cut(s)	39, 152, 547, 559, 586, 592, 673, 718
LmnI	GCTCC	1 cut(s)	824
Lsp1109I	GCAGC	5 cut(s)	275, 299, 307, 484, 1071
LweI	GCATC	3 cut(s)	250, 724, 1015
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	2 cut(s)	704, 1216
MalI	GATC	8 cut(s)	41, 154, 549, 561, 588, 594, 675, 720
MboI	GATC	8 cut(s)	39, 152, 547, 559, 586, 592, 673, 718
MboII	GAAGA	3 cut(s)	193, 922, 1073
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	385, 666, 1010
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	2 cut(s)	87, 924
MluNI	TGGCCA	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	3 cut(s)	103, 421, 1032
MnlI	CCTC	7 cut(s)	351, 460, 637, 733, 972, 1057, 1188
Mox20I	TGGCCA	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	451
MscI	TGGCCA	1 cut(s)	573
MseI	TTAA	2 cut(s)	516, 923
Msp20I	TGGCCA	1 cut(s)	573
MspI	CCGG	1 cut(s)	902
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	3 cut(s)	43, 574, 604
NdeI	CATATG	2 cut(s)	404, 890
NdeII	GATC	8 cut(s)	39, 152, 547, 559, 586, 592, 673, 718
NmuCI	GTSAC	2 cut(s)	704, 1216
NsbI	TGCGCA	1 cut(s)	167
PagI	TCATGA	6 cut(s)	556, 589, 670, 676, 712, 754
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	4 cut(s)	5, 13, 140, 373
PflMI	CCANNNNNTGG	1 cut(s)	782
PkrI	GCNGC	5 cut(s)	265, 289, 322, 499, 1086
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
PspFI	CCCAGC	2 cut(s)	327, 416
PspPI	GGNCC	1 cut(s)	125
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	6 cut(s)	189, 534, 896, 931, 996, 1202
RsaNI	GTAC	6 cut(s)	188, 533, 895, 930, 995, 1201
SaqAI	TTAA	2 cut(s)	516, 923
SatI	GCNGC	5 cut(s)	264, 288, 321, 498, 1085
Sau3AI	GATC	8 cut(s)	39, 152, 547, 559, 586, 592, 673, 718
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	842
SduI	GDGCHC	3 cut(s)	385, 666, 1010
SfaNI	GCATC	3 cut(s)	250, 724, 1015
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	1037
SmoI	CTYRAG	1 cut(s)	1037
Sse9I	AATT	2 cut(s)	87, 924
SspI	AATATT	2 cut(s)	252, 520
SspMI	CTAG	1 cut(s)	509
StyI	CCWWGG	3 cut(s)	43, 574, 604
TaaI	ACNGT	7 cut(s)	537, 554, 566, 704, 710, 967, 1105
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	2 cut(s)	653, 990
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	87, 924
TatI	WGTACW	3 cut(s)	532, 994, 1200
TfiI	GAWTC	4 cut(s)	5, 13, 140, 373
Tru1I	TTAA	2 cut(s)	516, 923
Tru9I	TTAA	2 cut(s)	516, 923
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	704, 1216
TseI	GCWGC	5 cut(s)	263, 287, 320, 497, 1084
Tsp45I	GTSAC	2 cut(s)	704, 1216
TspDTI	ATGAA	5 cut(s)	193, 447, 693, 711, 824
TspGWI	ACGGA	1 cut(s)	820
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.