Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

39434541 .. 39438155

Gene Structure 3615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGAATCAGAGAATACACAACATTCCCAGATTATTGAGATCCATGGAGATGTTCCTGGTGAAGAGACGAGTGTGGGCGGGAGTAAGATTTGTGGGGAAGCACCGTGTGGACTGTCGGATGTTGGACCGCATTCTAAAGATTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGGTAGCAGTGGTACTCTGTGTTCTCTTCATGGGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCACATTTGCTCTCTGATGTTGCAGCCTTTGCCATCTCCTTGTTCTCCTTGTGGGCTGCTGGCTGGGAAACCACTCCCCGTCAGTCTTACGGCTTTTTCAGGATTGAGATTCTCGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTAATAACACATCTGACGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGCCATGATCATGGTCATGATCACGGCCACGGCCACAGACATGGTCATGGCCATGGCCATGGACATGATGATCATGATCATCACAGCCATGTAATGACATTTTCTACTCATCATCACCATGAGGAACACTCTACTGATGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCATCACAGTCATGATGATCATAAACACAATGGTGCTGATGAAGGTCATGCTCATGAGCCACTCTTGGACAAGCCAAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAATGTGCAGGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATTGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAATTGATTTGATTTGCACCCTAATATTTTCTGTTATTGTTTTGGGGACAACTTTCAAGATGATAAGGAACATACTCGATGTACTAATGGAGAGCACACCAAGGGAGATTGATGCAACGAAACTTGAGAAGGGGCTGTTGGAGATGGGAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGACAAAGTGATTGATTATATCAGAAGGGAGCACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

418

Amino Acids

46.4

Weight (kDa)

5.86

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 340	4.8e-35	Cation efflux transmembrane domain
ZT_dimer	PF16916	344 - 417	1.2e-11	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	909
AciI	CCGC	2 cut(s)	78, 128
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	5 cut(s)	565, 571, 589, 595, 808
AcuI	CTGAAG	1 cut(s)	1185
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	4 cut(s)	189, 534, 914, 1014
AfiI	CCNNNNNNNGG	2 cut(s)	800, 909
AgsI	TTSAA	4 cut(s)	215, 233, 875, 988
AjiI	CACGTC	1 cut(s)	469
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	1052, 1084
AleI	CACNNNNGTG	1 cut(s)	750
AluBI	AGCT	5 cut(s)	158, 172, 243, 845, 1102
AluI	AGCT	5 cut(s)	158, 172, 243, 845, 1102
Alw21I	GWGCWC	3 cut(s)	684, 1028, 1221
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	7 cut(s)	541, 565, 571, 589, 595, 808, 900
ApeKI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1102
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	125, 900
AsuHPI	GGTGA	2 cut(s)	71, 647
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	3 cut(s)	591, 597, 810
Bbv12I	GWGCWC	3 cut(s)	684, 1028, 1221
BbvI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1089
BccI	CCATC	5 cut(s)	305, 693, 729, 911, 1069
BceAI	ACGGC	3 cut(s)	370, 580, 586
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	6 cut(s)	547, 559, 610, 616, 691, 736
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	509
BisI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1103
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1104
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	125, 900
BmiI	GGNNCC	1 cut(s)	901
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	2 cut(s)	250, 1033
BplI	GAGNNNNNCTC	2 cut(s)	653, 685
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	1076
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	5 cut(s)	43, 568, 592, 598, 1031
BsaXI	ACNNNNNCTCC	2 cut(s)	1071, 1101
Bsc4I	CCNNNNNNNGG	2 cut(s)	800, 909
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	5 cut(s)	43, 568, 592, 598, 1031
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	2 cut(s)	800, 909
BseXI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1089
BseYI	CCCAGC	2 cut(s)	327, 416
BsgI	GTGCAG	1 cut(s)	857
BshFI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 810, 902
BsiHKAI	GWGCWC	3 cut(s)	684, 1028, 1221
BsiSI	CCGG	1 cut(s)	920
BslFI	GGGAC	2 cut(s)	878, 991
BslI	CCNNNNNNNGG	2 cut(s)	800, 909
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	878, 991
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 810, 902
Bsp1286I	GDGCHC	3 cut(s)	684, 1028, 1221
Bsp143I	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 691, 736
Bsp1720I	GCTNAGC	1 cut(s)	244
Bsp19I	CCATGG	3 cut(s)	43, 592, 598
BspACI	CCGC	2 cut(s)	78, 128
BspANI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 810, 902
BspHI	TCATGA	6 cut(s)	556, 613, 688, 694, 730, 772
BspLI	GGNNCC	1 cut(s)	901
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	5 cut(s)	43, 568, 592, 598, 1031
BssMI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 691, 736
BssT1I	CCWWGG	4 cut(s)	43, 592, 598, 1031
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	5 cut(s)	105, 114, 537, 728, 1123
Bst6I	CTCTTC	2 cut(s)	57, 206
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	5 cut(s)	170, 325, 414, 1140, 1144
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	4 cut(s)	43, 568, 592, 598
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	8 cut(s)	42, 155, 550, 562, 613, 619, 694, 739
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 691, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1089
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	3 cut(s)	551, 581, 599
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	7 cut(s)	543, 567, 573, 591, 597, 810, 902
BtgI	CCRYGG	4 cut(s)	43, 568, 592, 598
BtrI	CACGTC	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	170, 325, 414, 1140, 1144
CciI	TCATGA	6 cut(s)	556, 613, 688, 694, 730, 772
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	125, 900
Csp6I	GTAC	4 cut(s)	188, 533, 913, 1013
CviQI	GTAC	4 cut(s)	188, 533, 913, 1013
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	8 cut(s)	41, 154, 549, 561, 612, 618, 693, 738
DpnII	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 691, 736
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	5 cut(s)	565, 571, 589, 595, 808
Eam1104I	CTCTTC	2 cut(s)	57, 206
EarI	CTCTTC	2 cut(s)	57, 206
Eco130I	CCWWGG	4 cut(s)	43, 592, 598, 1031
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	1185
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	4 cut(s)	43, 592, 598, 1031
ErhI	CCWWGG	4 cut(s)	43, 592, 598, 1031
Esp3I	CGTCTC	1 cut(s)	59
FaqI	GGGAC	2 cut(s)	878, 991
FauI	CCCGC	1 cut(s)	71
FauNDI	CATATG	2 cut(s)	404, 908
FbaI	TGATCA	6 cut(s)	547, 559, 610, 616, 691, 736
Fnu4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1103
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1103
FspBI	CTAG	1 cut(s)	509
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1103
GsaI	CCCAGC	2 cut(s)	331, 420
HaeIII	GGCC	7 cut(s)	543, 567, 573, 591, 597, 810, 902
HapII	CCGG	1 cut(s)	920
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	5, 140, 373
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	2 cut(s)	71, 647
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	7 cut(s)	10, 118, 280, 466, 483, 1160, 1211
Hpy188III	TCNNGA	8 cut(s)	364, 557, 614, 689, 695, 731, 773, 988
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	755, 860, 1054, 1206
HpyCH4III	ACNGT	5 cut(s)	105, 114, 537, 728, 1123
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	8 cut(s)	263, 287, 500, 838, 948, 1046, 1105, 1175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	468
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	6 cut(s)	547, 559, 610, 616, 691, 736
Kzo9I	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 691, 736
LmnI	GCTCC	2 cut(s)	842, 1216
Lsp1109I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1089
LweI	GCATC	2 cut(s)	250, 1033
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	1234
MalI	GATC	8 cut(s)	41, 154, 549, 561, 612, 618, 693, 738
MboI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 691, 736
MboII	GAAGA	5 cut(s)	74, 193, 710, 826, 940
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	684, 1028, 1221
MlsI	TGGCCA	3 cut(s)	591, 597, 810
MluCI	AATT	1 cut(s)	933
MluNI	TGGCCA	3 cut(s)	591, 597, 810
MmeI	TCCRAC	4 cut(s)	96, 103, 421, 1050
MnlI	CCTC	1 cut(s)	655
Mox20I	TGGCCA	3 cut(s)	591, 597, 810
MscI	TGGCCA	3 cut(s)	591, 597, 810
MseI	TTAA	3 cut(s)	453, 516, 1255
Msp20I	TGGCCA	3 cut(s)	591, 597, 810
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	3 cut(s)	43, 592, 598
NdeI	CATATG	2 cut(s)	404, 908
NdeII	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 691, 736
NlaIV	GGNNCC	1 cut(s)	901
NmuCI	GTSAC	1 cut(s)	1234
NsbI	TGCGCA	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	750
PagI	TCATGA	6 cut(s)	556, 613, 688, 694, 730, 772
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	5, 140, 373
PflFI	GACNNNGTC	1 cut(s)	582
PflMI	CCANNNNNTGG	1 cut(s)	909
PkrI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1104
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	2 cut(s)	327, 416
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	901
PspPI	GGNCC	2 cut(s)	125, 900
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	4 cut(s)	189, 534, 914, 1014
RsaNI	GTAC	4 cut(s)	188, 533, 913, 1013
SaqAI	TTAA	3 cut(s)	453, 516, 1255
SatI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1103
Sau3AI	GATC	8 cut(s)	39, 152, 547, 559, 610, 616, 691, 736
Sau96I	GGNCC	2 cut(s)	125, 900
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	3 cut(s)	684, 1028, 1221
SetI	ASST	9 cut(s)	160, 174, 245, 471, 766, 847, 852, 1104, 1165
SfaNI	GCATC	2 cut(s)	250, 1033
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	1055
SmoI	CTYRAG	1 cut(s)	1055
Sse9I	AATT	1 cut(s)	933
SsiI	CCGC	2 cut(s)	78, 128
SspI	AATATT	3 cut(s)	252, 520, 957
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	4 cut(s)	43, 592, 598, 1031
TaaI	ACNGT	5 cut(s)	105, 114, 537, 728, 1123
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	1 cut(s)	1008
TasI	AATT	1 cut(s)	933
TatI	WGTACW	2 cut(s)	532, 1012
TfiI	GAWTC	3 cut(s)	5, 140, 373
Tru1I	TTAA	3 cut(s)	453, 516, 1255
Tru9I	TTAA	3 cut(s)	453, 516, 1255
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	1234
TseI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1102
Tsp45I	GTSAC	1 cut(s)	1234
TspDTI	ATGAA	6 cut(s)	193, 447, 711, 729, 774, 842
TspGWI	ACGGA	1 cut(s)	838
TspRI	CASTG	1 cut(s)	189
Tth111I	GACNNNGTC	1 cut(s)	582
Van91I	CCANNNNNTGG	1 cut(s)	909
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	453
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.