Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

51598948 .. 51601502

Gene Structure 2555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG291900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGAAGATGGAATCAGAGAATACACAACATTCCCAGATTATTGAGATCCATGGAGATGTTCCTGGTGAAGAGACGAGTGTGGGCGGGAGTAAGATTTGTGGGGAAGCACCGTGTGGACTGTCGGATGTTGGACCGCATTCTAAAGATTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGGTAGCAGTGGTACTCTGTGTTCTCTTCATGGGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCACATTTGCTCTCTGATGTTGCAGCCTTTGCCATCTCCTTGTTCTCCTTGTGGGCTGCTGGCTGGGAAACCACTCCCCGTCAGTCTTACGGCTTTTTCAGGATTGAGATTCTCGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTAATAACACATCTGACGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGCCATGATCATGGTCATGATCACGGCCACGGCCACAGACATGGTCATGGCCATGGCCATGGACATGATGATCATGATCATCACAGCCATGTAATGACATTTTCTACTCATCATCACCATGAGGAACACTCTACTGATGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCATCACAGTCATGATGATCATAAACACAATGGTGCTGATGAAGGTCATGCTCATGAGCCACTCTTGGACAAGCCAAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAATGTGCAGGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATTGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAATTGATTTGATTTGCACCCTAATATTTTCTGTTATTGTTTTGGGGACAACTTTCAAGATGATAAGGAACATACTCGATGTACTAATGGAGAGCACACCAAGGGAGATTGATGCAACGAAACTTGAGAAGGGGCTGTTGGAGATGGGAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGACAAAGTGATTGATTATATCAGAAGGGAGCACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

420

Amino Acids

46.66

Weight (kDa)

5.9

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	60 - 342	4.8e-35	Cation efflux transmembrane domain
ZT_dimer	PF16916	346 - 419	1.2e-11	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	915
AciI	CCGC	2 cut(s)	84, 134
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	5 cut(s)	571, 577, 595, 601, 814
AcuI	CTGAAG	1 cut(s)	1191
AdeI	CACNNNGTG	1 cut(s)	113
AfaI	GTAC	4 cut(s)	195, 540, 920, 1020
AfiI	CCNNNNNNNGG	2 cut(s)	806, 915
AgsI	TTSAA	4 cut(s)	221, 239, 881, 994
AjiI	CACGTC	1 cut(s)	475
AjnI	CCWGG	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	1058, 1090
AleI	CACNNNNGTG	1 cut(s)	756
AluBI	AGCT	5 cut(s)	164, 178, 249, 851, 1108
AluI	AGCT	5 cut(s)	164, 178, 249, 851, 1108
Alw21I	GWGCWC	3 cut(s)	690, 1034, 1227
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	40
AoxI	GGCC	7 cut(s)	547, 571, 577, 595, 601, 814, 906
ApeKI	GCWGC	6 cut(s)	164, 269, 293, 326, 503, 1108
AseI	ATTAAT	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	2 cut(s)	131, 906
AsuHPI	GGTGA	2 cut(s)	77, 653
AvaII	GGWCC	1 cut(s)	131
BalI	TGGCCA	3 cut(s)	597, 603, 816
Bbv12I	GWGCWC	3 cut(s)	690, 1034, 1227
BbvI	GCAGC	6 cut(s)	151, 281, 305, 313, 490, 1095
BccI	CCATC	5 cut(s)	311, 699, 735, 917, 1075
BceAI	ACGGC	3 cut(s)	376, 586, 592
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	6 cut(s)	553, 565, 616, 622, 697, 742
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	515
BisI	GCNGC	6 cut(s)	165, 270, 294, 327, 504, 1109
BlpI	GCTNAGC	1 cut(s)	250
BlsI	GCNGC	6 cut(s)	166, 271, 295, 328, 505, 1110
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	131, 906
BmiI	GGNNCC	1 cut(s)	907
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	256, 1039
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
Bpu1102I	GCTNAGC	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	1082
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	5 cut(s)	49, 574, 598, 604, 1037
BsaXI	ACNNNNNCTCC	2 cut(s)	1077, 1107
Bsc4I	CCNNNNNNNGG	2 cut(s)	806, 915
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	5 cut(s)	49, 574, 598, 604, 1037
BseGI	GGATG	1 cut(s)	130
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	806, 915
BseXI	GCAGC	6 cut(s)	151, 281, 305, 313, 490, 1095
BseYI	CCCAGC	2 cut(s)	333, 422
BsgI	GTGCAG	1 cut(s)	863
BshFI	GGCC	7 cut(s)	549, 573, 579, 597, 603, 816, 908
BsiHKAI	GWGCWC	3 cut(s)	690, 1034, 1227
BsiSI	CCGG	1 cut(s)	926
BslFI	GGGAC	2 cut(s)	884, 997
BslI	CCNNNNNNNGG	2 cut(s)	806, 915
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmFI	GGGAC	2 cut(s)	884, 997
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	7 cut(s)	549, 573, 579, 597, 603, 816, 908
Bsp1286I	GDGCHC	3 cut(s)	690, 1034, 1227
Bsp143I	GATC	8 cut(s)	45, 158, 553, 565, 616, 622, 697, 742
Bsp1720I	GCTNAGC	1 cut(s)	250
Bsp19I	CCATGG	3 cut(s)	49, 598, 604
BspACI	CCGC	2 cut(s)	84, 134
BspANI	GGCC	7 cut(s)	549, 573, 579, 597, 603, 816, 908
BspHI	TCATGA	6 cut(s)	562, 619, 694, 700, 736, 778
BspLI	GGNNCC	1 cut(s)	907
BspPI	GGATC	1 cut(s)	40
BssECI	CCNNGG	5 cut(s)	49, 574, 598, 604, 1037
BssMI	GATC	8 cut(s)	45, 158, 553, 565, 616, 622, 697, 742
BssT1I	CCWWGG	4 cut(s)	49, 598, 604, 1037
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	5 cut(s)	111, 120, 543, 734, 1129
Bst6I	CTCTTC	2 cut(s)	63, 212
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	5 cut(s)	176, 331, 420, 1146, 1150
BstDEI	CTNAG	1 cut(s)	250
BstDSI	CCRYGG	4 cut(s)	49, 574, 598, 604
BstF5I	GGATG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	8 cut(s)	48, 161, 556, 568, 619, 625, 700, 745
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	8 cut(s)	45, 158, 553, 565, 616, 622, 697, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	6 cut(s)	151, 281, 305, 313, 490, 1095
BstX2I	RGATCY	1 cut(s)	45
BstXI	CCANNNNNNTGG	3 cut(s)	557, 587, 605
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	7 cut(s)	549, 573, 579, 597, 603, 816, 908
BtgI	CCRYGG	4 cut(s)	49, 574, 598, 604
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	5 cut(s)	176, 331, 420, 1146, 1150
CciI	TCATGA	6 cut(s)	562, 619, 694, 700, 736, 778
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	2 cut(s)	131, 906
Csp6I	GTAC	4 cut(s)	194, 539, 919, 1019
CviQI	GTAC	4 cut(s)	194, 539, 919, 1019
DdeI	CTNAG	1 cut(s)	250
DpnI	GATC	8 cut(s)	47, 160, 555, 567, 618, 624, 699, 744
DpnII	GATC	8 cut(s)	45, 158, 553, 565, 616, 622, 697, 742
DraIII	CACNNNGTG	1 cut(s)	113
EaeI	YGGCCR	5 cut(s)	571, 577, 595, 601, 814
Eam1104I	CTCTTC	2 cut(s)	63, 212
EarI	CTCTTC	2 cut(s)	63, 212
Eco130I	CCWWGG	4 cut(s)	49, 598, 604, 1037
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	1191
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	4 cut(s)	49, 598, 604, 1037
ErhI	CCWWGG	4 cut(s)	49, 598, 604, 1037
Esp3I	CGTCTC	1 cut(s)	65
FaqI	GGGAC	2 cut(s)	884, 997
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	2 cut(s)	410, 914
FbaI	TGATCA	6 cut(s)	553, 565, 616, 622, 697, 742
Fnu4HI	GCNGC	6 cut(s)	165, 270, 294, 327, 504, 1109
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	6 cut(s)	165, 270, 294, 327, 504, 1109
FspBI	CTAG	1 cut(s)	515
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	6 cut(s)	165, 270, 294, 327, 504, 1109
GsaI	CCCAGC	2 cut(s)	337, 426
HaeIII	GGCC	7 cut(s)	549, 573, 579, 597, 603, 816, 908
HapII	CCGG	1 cut(s)	926
HhaI	GCGC	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	11, 146, 379
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	2 cut(s)	77, 653
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	7 cut(s)	16, 124, 286, 472, 489, 1166, 1217
Hpy188III	TCNNGA	8 cut(s)	370, 563, 620, 695, 701, 737, 779, 994
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	761, 866, 1060, 1212
HpyCH4III	ACNGT	5 cut(s)	111, 120, 543, 734, 1129
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	8 cut(s)	269, 293, 506, 844, 954, 1052, 1111, 1181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	474
HspAI	GCGC	1 cut(s)	172
Ksp22I	TGATCA	6 cut(s)	553, 565, 616, 622, 697, 742
Kzo9I	GATC	8 cut(s)	45, 158, 553, 565, 616, 622, 697, 742
LmnI	GCTCC	2 cut(s)	848, 1222
Lsp1109I	GCAGC	6 cut(s)	151, 281, 305, 313, 490, 1095
LweI	GCATC	2 cut(s)	256, 1039
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	1240
MalI	GATC	8 cut(s)	47, 160, 555, 567, 618, 624, 699, 744
MboI	GATC	8 cut(s)	45, 158, 553, 565, 616, 622, 697, 742
MboII	GAAGA	6 cut(s)	16, 80, 199, 716, 832, 946
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	3 cut(s)	690, 1034, 1227
MlsI	TGGCCA	3 cut(s)	597, 603, 816
MluCI	AATT	1 cut(s)	939
MluNI	TGGCCA	3 cut(s)	597, 603, 816
MmeI	TCCRAC	4 cut(s)	102, 109, 427, 1056
MnlI	CCTC	1 cut(s)	661
Mox20I	TGGCCA	3 cut(s)	597, 603, 816
MscI	TGGCCA	3 cut(s)	597, 603, 816
MseI	TTAA	3 cut(s)	459, 522, 1261
Msp20I	TGGCCA	3 cut(s)	597, 603, 816
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	299
NcoI	CCATGG	3 cut(s)	49, 598, 604
NdeI	CATATG	2 cut(s)	410, 914
NdeII	GATC	8 cut(s)	45, 158, 553, 565, 616, 622, 697, 742
NlaIV	GGNNCC	1 cut(s)	907
NmuCI	GTSAC	1 cut(s)	1240
NsbI	TGCGCA	1 cut(s)	173
OliI	CACNNNNGTG	1 cut(s)	756
PagI	TCATGA	6 cut(s)	562, 619, 694, 700, 736, 778
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	11, 146, 379
PflFI	GACNNNGTC	1 cut(s)	588
PflMI	CCANNNNNTGG	1 cut(s)	915
PkrI	GCNGC	6 cut(s)	166, 271, 295, 328, 505, 1110
PshBI	ATTAAT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	61
PspFI	CCCAGC	2 cut(s)	333, 422
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	907
PspPI	GGNCC	2 cut(s)	131, 906
PsrI	GAACNNNNNNTAC	2 cut(s)	186, 218
PsuI	RGATCY	1 cut(s)	45
PsyI	GACNNNGTC	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	4 cut(s)	195, 540, 920, 1020
RsaNI	GTAC	4 cut(s)	194, 539, 919, 1019
SaqAI	TTAA	3 cut(s)	459, 522, 1261
SatI	GCNGC	6 cut(s)	165, 270, 294, 327, 504, 1109
Sau3AI	GATC	8 cut(s)	45, 158, 553, 565, 616, 622, 697, 742
Sau96I	GGNCC	2 cut(s)	131, 906
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	3 cut(s)	690, 1034, 1227
SetI	ASST	9 cut(s)	166, 180, 251, 477, 772, 853, 858, 1110, 1171
SfaNI	GCATC	2 cut(s)	256, 1039
SinI	GGWCC	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
Sse9I	AATT	1 cut(s)	939
SsiI	CCGC	2 cut(s)	84, 134
SspI	AATATT	3 cut(s)	258, 526, 963
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	4 cut(s)	49, 598, 604, 1037
TaaI	ACNGT	5 cut(s)	111, 120, 543, 734, 1129
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	1 cut(s)	1014
TasI	AATT	1 cut(s)	939
TatI	WGTACW	2 cut(s)	538, 1018
TfiI	GAWTC	3 cut(s)	11, 146, 379
Tru1I	TTAA	3 cut(s)	459, 522, 1261
Tru9I	TTAA	3 cut(s)	459, 522, 1261
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	1240
TseI	GCWGC	6 cut(s)	164, 269, 293, 326, 503, 1108
Tsp45I	GTSAC	1 cut(s)	1240
TspDTI	ATGAA	7 cut(s)	17, 199, 453, 717, 735, 780, 848
TspGWI	ACGGA	1 cut(s)	844
TspRI	CASTG	1 cut(s)	195
Tth111I	GACNNNGTC	1 cut(s)	588
Van91I	CCANNNNNTGG	1 cut(s)	915
VpaK11BI	GGWCC	1 cut(s)	131
VspI	ATTAAT	1 cut(s)	459
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.