Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

52975290 .. 52978365

Gene Structure 3076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG298000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAATCAGAGAATACACAACATTCCCAGATTGTCGAGATCCATGGAGATGCTCCTGGTGAAGAGACGAGTGTGGGTGGGAGTAAAATTTGTGGGGAAGCACCGTGTGGACTGTCGGATGTTGGACCAAATTCTAAAGATTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGATAGCAGTGGTACTCTGTGTTCTCTTCATGAGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCACATTTGCTCTCTGATGTTGCAGCCTTTGCTATCTCCTTGTTCTCCTTGTGGGCTGCTAGCTGGGAAACCACTCCCCGTCAGTCTTACGGCTTTTTCAGGATTGAGATTCTCGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTAATAACACATCTGAGGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGTCATGATCATGGCCATGGCCATGGACATGATGATCATGATCATCACAGCCATGGAATGACATTTTCTACTCATCATCACCATCGCCATGAGGAACACTCGAATGACGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCAGCACAGTCATGATGATCATAAACACAATGGTGCTGATGAAGTTCATGCTCATGAGCCACTCTTGGACAAGCCAAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAACGTGCAGGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATCGGTGTAATGATTGGTGGGGCCATCGTATGGTACAAGCCGGAATGGAAGATAGTTGATTTGATTTGCACCCTAATATTTTCTGTCATTGTTTTGGGGACAACTTTCAAGATGATGAGGAACATACTCGATGTACTAATGGAGAGCACACCAAGAGAGATTGATGCAACAAAACTTGAGAAGGGGCTGTTGGAGATGGAAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAGTGCAGACATGGTGCTGGACAAAGTGATTGATTATATCAGAAGGGAGTACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

408

Amino Acids

45.46

Weight (kDa)

5.68

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	58 - 330	2.1e-36	Cation efflux transmembrane domain
ZT_dimer	PF16916	334 - 407	7.7e-13	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	879
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	3 cut(s)	553, 559, 778
AcsI	RAATTY	2 cut(s)	87, 130
AcuI	CTGAAG	1 cut(s)	1155
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	5 cut(s)	189, 534, 884, 984, 1190
AfiI	CCNNNNNNNGG	2 cut(s)	770, 879
AgsI	TTSAA	4 cut(s)	215, 233, 845, 958
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	1022, 1054
AleI	CACNNNNGTG	1 cut(s)	720
AluBI	AGCT	6 cut(s)	158, 172, 243, 327, 815, 1072
AluI	AGCT	6 cut(s)	158, 172, 243, 327, 815, 1072
Alw21I	GWGCWC	2 cut(s)	654, 998
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	4 cut(s)	553, 559, 778, 870
ApeKI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1072
ApoI	RAATTY	2 cut(s)	87, 130
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	125, 870
AsuHPI	GGTGA	3 cut(s)	71, 481, 611
AsuNHI	GCTAGC	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	3 cut(s)	555, 561, 780
Bbv12I	GWGCWC	2 cut(s)	654, 998
BbvI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1059
BccI	CCATC	4 cut(s)	630, 663, 881, 1039
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	5 cut(s)	547, 574, 580, 661, 706
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	324, 509
BisI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1073
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1074
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	125, 870
BmiI	GGNNCC	1 cut(s)	871
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	3 cut(s)	40, 250, 1003
BmtI	GCTAGC	1 cut(s)	327
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	1046
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	4 cut(s)	43, 556, 562, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	770, 879
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	4 cut(s)	43, 556, 562, 592
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	770, 879
BseMII	CTCAG	1 cut(s)	456
BseXI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1059
BseYI	CCCAGC	2 cut(s)	327, 416
BsgI	GTGCAG	2 cut(s)	827, 1164
BshFI	GGCC	4 cut(s)	555, 561, 780, 872
BsiHKAI	GWGCWC	2 cut(s)	654, 998
BsiSI	CCGG	1 cut(s)	890
BslFI	GGGAC	2 cut(s)	848, 961
BslI	CCNNNNNNNGG	2 cut(s)	770, 879
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	848, 961
BsnI	GGCC	4 cut(s)	555, 561, 780, 872
Bsp1286I	GDGCHC	2 cut(s)	654, 998
Bsp143I	GATC	7 cut(s)	39, 152, 547, 574, 580, 661, 706
Bsp1720I	GCTNAGC	1 cut(s)	244
Bsp19I	CCATGG	4 cut(s)	43, 556, 562, 592
BspANI	GGCC	4 cut(s)	555, 561, 780, 872
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	7 cut(s)	204, 544, 577, 658, 664, 700, 742
BspLI	GGNNCC	1 cut(s)	871
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	4 cut(s)	43, 556, 562, 592
BssMI	GATC	7 cut(s)	39, 152, 547, 574, 580, 661, 706
BssT1I	CCWWGG	4 cut(s)	43, 556, 562, 592
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	5 cut(s)	105, 114, 537, 698, 1093
Bst6I	CTCTTC	2 cut(s)	57, 206
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	5 cut(s)	170, 325, 414, 1110, 1114
BstDEI	CTNAG	2 cut(s)	244, 465
BstDSI	CCRYGG	4 cut(s)	43, 556, 562, 592
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	7 cut(s)	42, 155, 550, 577, 583, 664, 709
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	7 cut(s)	39, 152, 547, 574, 580, 661, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1059
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	555, 561, 780, 872
BtgI	CCRYGG	4 cut(s)	43, 556, 562, 592
BtgZI	GCGATG	1 cut(s)	608
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	170, 325, 414, 1110, 1114
CciI	TCATGA	7 cut(s)	204, 544, 577, 658, 664, 700, 742
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	125, 870
Csp6I	GTAC	5 cut(s)	188, 533, 883, 983, 1189
CviQI	GTAC	5 cut(s)	188, 533, 883, 983, 1189
DdeI	CTNAG	2 cut(s)	244, 465
DpnI	GATC	7 cut(s)	41, 154, 549, 576, 582, 663, 708
DpnII	GATC	7 cut(s)	39, 152, 547, 574, 580, 661, 706
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	3 cut(s)	553, 559, 778
Eam1104I	CTCTTC	2 cut(s)	57, 206
EarI	CTCTTC	2 cut(s)	57, 206
Eco130I	CCWWGG	4 cut(s)	43, 556, 562, 592
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	1155
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	4 cut(s)	43, 556, 562, 592
ErhI	CCWWGG	4 cut(s)	43, 556, 562, 592
Esp3I	CGTCTC	1 cut(s)	59
FaqI	GGGAC	2 cut(s)	848, 961
FauNDI	CATATG	1 cut(s)	404
FbaI	TGATCA	5 cut(s)	547, 574, 580, 661, 706
Fnu4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1073
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1073
FspBI	CTAG	2 cut(s)	324, 509
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1073
GsaI	CCCAGC	2 cut(s)	331, 420
HaeIII	GGCC	4 cut(s)	555, 561, 780, 872
HapII	CCGG	1 cut(s)	890
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	5, 140, 373
HpaII	CCGG	1 cut(s)	890
HphI	GGTGA	3 cut(s)	71, 481, 611
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	7 cut(s)	10, 118, 280, 466, 483, 1130, 1181
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	830, 1024, 1176
HpyCH4III	ACNGT	5 cut(s)	105, 114, 537, 698, 1093
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	8 cut(s)	263, 287, 500, 808, 918, 1016, 1075, 1145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	244, 465
HpySE526I	ACGT	1 cut(s)	804
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	5 cut(s)	547, 574, 580, 661, 706
Kzo9I	GATC	7 cut(s)	39, 152, 547, 574, 580, 661, 706
LmnI	GCTCC	2 cut(s)	58, 812
Lsp1109I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 1059
LweI	GCATC	3 cut(s)	40, 250, 1003
MaeI	CTAG	2 cut(s)	324, 509
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	1 cut(s)	1204
MalI	GATC	7 cut(s)	41, 154, 549, 576, 582, 663, 708
MboI	GATC	7 cut(s)	39, 152, 547, 574, 580, 661, 706
MboII	GAAGA	6 cut(s)	74, 193, 680, 796, 910, 1061
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	654, 998
MlsI	TGGCCA	3 cut(s)	555, 561, 780
MluCI	AATT	2 cut(s)	87, 130
MluNI	TGGCCA	3 cut(s)	555, 561, 780
MmeI	TCCRAC	4 cut(s)	96, 103, 421, 1020
MnlI	CCTC	3 cut(s)	460, 625, 960
Mox20I	TGGCCA	3 cut(s)	555, 561, 780
MscI	TGGCCA	3 cut(s)	555, 561, 780
MseI	TTAA	3 cut(s)	453, 516, 1225
Msp20I	TGGCCA	3 cut(s)	555, 561, 780
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	890
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	4 cut(s)	43, 556, 562, 592
NdeI	CATATG	1 cut(s)	404
NdeII	GATC	7 cut(s)	39, 152, 547, 574, 580, 661, 706
NheI	GCTAGC	1 cut(s)	323
NlaIV	GGNNCC	1 cut(s)	871
NmuCI	GTSAC	1 cut(s)	1204
NsbI	TGCGCA	1 cut(s)	167
OliI	CACNNNNGTG	1 cut(s)	720
PagI	TCATGA	7 cut(s)	204, 544, 577, 658, 664, 700, 742
PfeI	GAWTC	3 cut(s)	5, 140, 373
PflMI	CCANNNNNTGG	1 cut(s)	879
PkrI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 1074
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	2 cut(s)	327, 416
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	871
PspPI	GGNCC	2 cut(s)	125, 870
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	5 cut(s)	189, 534, 884, 984, 1190
RsaNI	GTAC	5 cut(s)	188, 533, 883, 983, 1189
SaqAI	TTAA	3 cut(s)	453, 516, 1225
SatI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 1073
Sau3AI	GATC	7 cut(s)	39, 152, 547, 574, 580, 661, 706
Sau96I	GGNCC	2 cut(s)	125, 870
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	654, 998
SfaNI	GCATC	3 cut(s)	40, 250, 1003
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	1025
SmoI	CTYRAG	1 cut(s)	1025
Sse9I	AATT	2 cut(s)	87, 130
SspI	AATATT	3 cut(s)	252, 520, 927
SspMI	CTAG	2 cut(s)	324, 509
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	4 cut(s)	43, 556, 562, 592
TaaI	ACNGT	5 cut(s)	105, 114, 537, 698, 1093
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	3 cut(s)	36, 641, 978
TasI	AATT	2 cut(s)	87, 130
TatI	WGTACW	3 cut(s)	532, 982, 1188
TfiI	GAWTC	3 cut(s)	5, 140, 373
Tru1I	TTAA	3 cut(s)	453, 516, 1225
Tru9I	TTAA	3 cut(s)	453, 516, 1225
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	1204
TseI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 1072
Tsp45I	GTSAC	1 cut(s)	1204
TspDTI	ATGAA	7 cut(s)	193, 447, 681, 699, 725, 744, 812
TspGWI	ACGGA	1 cut(s)	808
TspRI	CASTG	1 cut(s)	189
Van91I	CCANNNNNTGG	1 cut(s)	879
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	2 cut(s)	87, 130
XspI	CTAG	2 cut(s)	324, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.