Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

23605686 .. 23609669

Gene Structure 3984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G198700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAAGCACAAAATACTAATCATGCACAGGTTATTGAGATCCATCGAGATGGTCATGATGGTGAGACGAGTGTTGGTGGGAGTAAGATTTGTGGGGAAGCACCATGTGGACTCTCGGATGCTAGATCCGTCTCTAAAGATGCCAAAGAGCGATCAGCCTCCATGCGCAAGCTCTTAATTGCAGTGGTACTTTGTGTTCTGTTCATGGCTGTTGAGATTGCTGGTGGCATTGAAGCCAATAGTTTAGCAATATTGACAGATGCAGCACATTTGCTCTCGGACGTTGCAGCCTTTGCCATATCCTTGTTCTCTATGTGGGCTGCTGGTTGGGAAGCCACTCCCCGTCAGTCCTATGGGTTTTTTAGGATTGAAATTCTTGGTGCCCTGGTTTCCATCCAGATGATATGGTTACTTGCTGGGATATTGGTGTATGAAGCCATAGATAGAATGATTCATCCGACATCTGAGGTGAATGGCTTTCTAATGTTTCTTGTTGCCACATTTGGTCTAGTGGTTAATATAGCTATGGCCATTCTGTTGGGCCATGATCATGGGCATGGGCACGGGCACGGACATGATGGACATGATGGACATGATCACGGTCACAGTCATGGAATGACAATTTCTACTCATGATCATCATGCTCATGATCATGAGGAACACTCACATGAACATGAGCACCTTCACACTCATGAAGATCATAAAAATCATCATGCTGATGAAGATCATGGACACCATCATGCTGATGAAGCTCATGCAGAGCCACTGTTGGATAAGCCAAAAGATGGACTTGGGCAGAAGAAGCAAAGGAACATAAATCTACAGGGAGCTTATCTCCATGTGCTTGGGGACTCTGTTCAAAGTATCGGGGTAATGATTGGAGGGGCAATCATATGGTACAAGCCTGAGTGGAAGATAGTCGATTTGATTTGCACTCTAATCTTTTCGGTCATTGTTTTGGGGACAACGATCAATATGATGCGGAACATACTTGATGTGCTGATGGAGAGCACACCGAGAGAGATTGATGCGACAAAACTTGAAGAGGGGTTGCTGGAGATGGATGAAGTGGTGGCTATCCATGAGCTGCATATATGGGCTATCACAGTGGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCAGAAGCAAACGCAGACATGGTGCTGGACGATGTGATAGATTATATCAGAAGGGAGCATAACATCAGCCATGTGACCATACAAATTGAGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

414

Amino Acids

45.63

Weight (kDa)

5.66

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	785
AciI	CCGC	1 cut(s)	982
AclWI	GGATC	2 cut(s)	34, 120
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	2 cut(s)	189, 899
AfiI	CCNNNNNNNGG	1 cut(s)	785
AgsI	TTSAA	4 cut(s)	233, 371, 860, 1043
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	5 cut(s)	172, 524, 752, 830, 1087
AluI	AGCT	5 cut(s)	172, 524, 752, 830, 1087
Alw21I	GWGCWC	2 cut(s)	681, 1013
Alw26I	GTCTC	2 cut(s)	59, 136
AlwI	GGATC	2 cut(s)	34, 120
AoxI	GGCC	2 cut(s)	528, 541
ApeKI	GCWGC	4 cut(s)	263, 287, 320, 1087
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	2 cut(s)	74, 481
BaeGI	GKGCMC	3 cut(s)	385, 564, 570
BalI	TGGCCA	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	380
Bbv12I	GWGCWC	2 cut(s)	681, 1013
BbvI	GCAGC	4 cut(s)	275, 299, 307, 1074
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	4 cut(s)	547, 595, 634, 649
BcoDI	GTCTC	2 cut(s)	59, 136
BfaI	CTAG	2 cut(s)	123, 509
BfmI	CTRYAG	1 cut(s)	821
BisI	GCNGC	4 cut(s)	264, 288, 321, 1088
BlsI	GCNGC	4 cut(s)	265, 289, 322, 1089
Bme1390I	CCNGG	1 cut(s)	386
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	5 cut(s)	109, 130, 250, 969, 1018
BplI	GAGNNNNNCTC	4 cut(s)	647, 679, 819, 851
BpmI	CTGGAG	1 cut(s)	1076
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	785
Bse8I	GATNNNNATC	1 cut(s)	723
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	4 cut(s)	124, 393, 454, 1069
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	1 cut(s)	785
BseMII	CTCAG	2 cut(s)	456, 897
BseSI	GKGCMC	3 cut(s)	385, 564, 570
BseXI	GCAGC	4 cut(s)	275, 299, 307, 1074
BseYI	CCCAGC	1 cut(s)	416
BshFI	GGCC	2 cut(s)	530, 543
BshNI	GGYRCC	1 cut(s)	380
BsiHKAI	GWGCWC	2 cut(s)	681, 1013
BslFI	GGGAC	2 cut(s)	863, 976
BslI	CCNNNNNNNGG	1 cut(s)	785
BsmAI	GTCTC	2 cut(s)	59, 136
BsmBI	CGTCTC	2 cut(s)	59, 136
BsmFI	GGGAC	2 cut(s)	863, 976
BsnI	GGCC	2 cut(s)	530, 543
Bsp1286I	GDGCHC	5 cut(s)	385, 564, 570, 681, 1013
BspACI	CCGC	1 cut(s)	982
BspANI	GGCC	2 cut(s)	530, 543
BspCNI	CTCAG	2 cut(s)	457, 898
BspHI	TCATGA	5 cut(s)	55, 631, 646, 652, 691
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	2 cut(s)	34, 120
BspT107I	GGYRCC	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	4 cut(s)	602, 608, 768, 1108
Bst6I	CTCTTC	1 cut(s)	1038
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	3 cut(s)	170, 1125, 1129
BstDEI	CTNAG	2 cut(s)	465, 906
BstF5I	GGATG	4 cut(s)	124, 393, 454, 1069
BstHHI	GCGC	1 cut(s)	168
BstMAI	GTCTC	2 cut(s)	59, 136
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 749, 802
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	821
BstSLI	GKGCMC	3 cut(s)	385, 564, 570
BstV1I	GCAGC	4 cut(s)	275, 299, 307, 1074
BstX2I	RGATCY	2 cut(s)	39, 125
BstXI	CCANNNNNNTGG	4 cut(s)	50, 538, 551, 845
BstYI	RGATCY	2 cut(s)	39, 125
BsuRI	GGCC	2 cut(s)	530, 543
BtsCI	GGATG	4 cut(s)	124, 393, 454, 1069
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	189, 764, 1113
Cac8I	GCNNGC	3 cut(s)	170, 1125, 1129
CciI	TCATGA	5 cut(s)	55, 631, 646, 652, 691
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	188, 898
CviQI	GTAC	2 cut(s)	188, 898
DdeI	CTNAG	2 cut(s)	465, 906
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	1038
EarI	CTCTTC	1 cut(s)	1038
EcoRII	CCWGG	1 cut(s)	384
Esp3I	CGTCTC	2 cut(s)	59, 136
FalI	AAGNNNNNCTT	2 cut(s)	774, 806
FaqI	GGGAC	2 cut(s)	863, 976
FauNDI	CATATG	1 cut(s)	893
FbaI	TGATCA	4 cut(s)	547, 595, 634, 649
Fnu4HI	GCNGC	4 cut(s)	264, 288, 321, 1088
FokI	GGATG	4 cut(s)	131, 380, 441, 1076
Fsp4HI	GCNGC	4 cut(s)	264, 288, 321, 1088
FspBI	CTAG	2 cut(s)	123, 509
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	4 cut(s)	264, 288, 321, 1088
GsaI	CCCAGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	1076
HaeIII	GGCC	2 cut(s)	530, 543
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	111, 451, 851
HphI	GGTGA	2 cut(s)	74, 481
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	6 cut(s)	118, 280, 459, 466, 1145, 1196
Hpy188III	TCNNGA	7 cut(s)	47, 56, 397, 632, 647, 653, 692
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	692, 1191
HpyCH4III	ACNGT	4 cut(s)	602, 608, 768, 1108
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	7 cut(s)	26, 182, 263, 287, 758, 933, 1090
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 749, 802
HpyF3I	CTNAG	2 cut(s)	465, 906
HpySE526I	ACGT	1 cut(s)	282
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	4 cut(s)	547, 595, 634, 649
LmnI	GCTCC	2 cut(s)	827, 1201
Lsp1109I	GCAGC	4 cut(s)	275, 299, 307, 1074
LweI	GCATC	5 cut(s)	109, 130, 250, 969, 1018
MaeI	CTAG	2 cut(s)	123, 509
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	3 cut(s)	408, 602, 1219
MboII	GAAGA	5 cut(s)	707, 734, 811, 925, 1055
MflI	RGATCY	2 cut(s)	39, 125
MhlI	GDGCHC	5 cut(s)	385, 564, 570, 681, 1013
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	4 cut(s)	177, 372, 621, 1230
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	105, 845
MmeI	TCCRAC	2 cut(s)	482, 750
MnlI	CCTC	5 cut(s)	169, 460, 649, 875, 1039
Mox20I	TGGCCA	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	2 cut(s)	176, 516
Msp20I	TGGCCA	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	3 cut(s)	293, 749, 802
NdeI	CATATG	1 cut(s)	893
NlaIV	GGNNCC	1 cut(s)	382
NmuCI	GTSAC	2 cut(s)	602, 1219
NsbI	TGCGCA	1 cut(s)	167
PagI	TCATGA	5 cut(s)	55, 631, 646, 652, 691
PfeI	GAWTC	1 cut(s)	451
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	4 cut(s)	265, 289, 322, 1089
PleI	GAGTC	2 cut(s)	105, 845
PpsI	GAGTC	2 cut(s)	105, 845
Psp6I	CCWGG	1 cut(s)	384
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	382
PspPI	GGNCC	1 cut(s)	541
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	2 cut(s)	39, 125
RsaI	GTAC	2 cut(s)	189, 899
RsaNI	GTAC	2 cut(s)	188, 898
SaqAI	TTAA	2 cut(s)	176, 516
SatI	GCNGC	4 cut(s)	264, 288, 321, 1088
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	2 cut(s)	105, 845
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	5 cut(s)	385, 564, 570, 681, 1013
SetI	ASST	9 cut(s)	33, 174, 285, 471, 526, 684, 754, 832, 1089
SfaNI	GCATC	5 cut(s)	109, 130, 250, 969, 1018
SfcI	CTRYAG	1 cut(s)	821
Sse9I	AATT	4 cut(s)	177, 372, 621, 1230
SsiI	CCGC	1 cut(s)	982
SspI	AATATT	1 cut(s)	252
SspMI	CTAG	2 cut(s)	123, 509
StyD4I	CCNGG	1 cut(s)	384
TaaI	ACNGT	4 cut(s)	602, 608, 768, 1108
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	46, 921
TaqII	GACCGA	1 cut(s)	937
TasI	AATT	4 cut(s)	177, 372, 621, 1230
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	2 cut(s)	176, 516
Tru9I	TTAA	2 cut(s)	176, 516
TscAI	CASTG	3 cut(s)	189, 771, 1113
TseFI	GTSAC	2 cut(s)	602, 1219
TseI	GCWGC	4 cut(s)	263, 287, 320, 1087
Tsp45I	GTSAC	2 cut(s)	602, 1219
TspDTI	ATGAA	8 cut(s)	193, 443, 447, 684, 708, 735, 762, 1080
TspGWI	ACGGA	2 cut(s)	118, 585
TspRI	CASTG	3 cut(s)	189, 771, 1113
Van91I	CCANNNNNTGG	1 cut(s)	785
XapI	RAATTY	1 cut(s)	372
XspI	CTAG	2 cut(s)	123, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.