Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

18116605 .. 18118723

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCGGAAGCACGAAATACTCAACATGCACAGGTTATTGAGATCCATCAAGATGTTCATGATGGTGAGACAAGTAATGGTGGGAGTAAGATTTGTGGGGAAGCACCATGTGGACTCGCTGATGTTGGATCCAACTCTAAAGATGCCAAAGAACGATCAGCTTCCATGCGCAAACTCTTAATAGCAGTGGTACTGTGTGTTCTGTTCATGGCTGTTGAGGTAGTTGGTGGCATTGAAGCCAATAGTTTAGCAATATTGACAGATGCAGCACATTTGCTTTCGGACGTTGCAGCATTTGCCATCTCCTTGTTCTCTCTGTGGGCGGCTACCTGGGAAGCCACTCCCCGCCAGTCTTACGGGTTTTTTAGGATTGAAATTCTCGGTGCCCTGGTATCCATCCAACTCATATGGTTGCTTGCAGGGATATTGGTATATGAAGCCATAGTTAGAATGATACATAACACAAGCGAGGTGAATGGATTTCTAATGTTTCTCGTTGCCGCATTTGGTCTAGTGGTTAATATAGTTATGGCCATACTATTAGGTCATGATCGATGGACATGGACATGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

192

Amino Acids

20.75

Weight (kDa)

5.25

Isoelectric Point (pI)

30.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	59 - 183	4.2e-25	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	383
AciI	CCGC	3 cut(s)	323, 346, 501
AclWI	GGATC	3 cut(s)	37, 123, 136
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	236, 374
AjnI	CCWGG	2 cut(s)	329, 387
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	3 cut(s)	37, 123, 136
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	2 cut(s)	266, 290
ApoI	RAATTY	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	77, 484
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	533
BamHI	GGATCC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	278, 302
BccI	CCATC	5 cut(s)	54, 56, 308, 404, 549
BciT130I	CCWGG	2 cut(s)	331, 389
BciVI	GTATCC	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	512
BfuI	GTATCC	1 cut(s)	403
BisI	GCNGC	4 cut(s)	267, 291, 324, 501
BlsI	GCNGC	4 cut(s)	268, 292, 325, 502
Bme1390I	CCNGG	2 cut(s)	331, 389
BmiI	GGNNCC	2 cut(s)	130, 385
BmrFI	CCNGG	2 cut(s)	331, 389
BmsI	GCATC	2 cut(s)	133, 253
Bsa29I	ATCGAT	1 cut(s)	553
BsaJI	CCNNGG	2 cut(s)	330, 387
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	2 cut(s)	331, 389
BseCI	ATCGAT	1 cut(s)	553
BseDI	CCNNGG	2 cut(s)	330, 387
BseGI	GGATG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	349
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	278, 302
BshFI	GGCC	1 cut(s)	533
BshNI	GGYRCC	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	4 cut(s)	42, 128, 155, 550
BspACI	CCGC	3 cut(s)	323, 346, 501
BspANI	GGCC	1 cut(s)	533
BspDI	ATCGAT	1 cut(s)	553
BspHI	TCATGA	2 cut(s)	58, 547
BspLI	GGNNCC	2 cut(s)	130, 385
BspPI	GGATC	3 cut(s)	37, 123, 136
BspT107I	GGYRCC	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	330, 387
BssMI	GATC	4 cut(s)	42, 128, 155, 550
Bst2UI	CCWGG	2 cut(s)	331, 389
Bst4CI	ACNGT	1 cut(s)	195
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	4 cut(s)	45, 131, 158, 553
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	4 cut(s)	42, 128, 155, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	2 cut(s)	331, 389
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	329, 387
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	278, 302
BstX2I	RGATCY	2 cut(s)	42, 128
BstYI	RGATCY	2 cut(s)	42, 128
Bsu15I	ATCGAT	1 cut(s)	553
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	533
BsuTUI	ATCGAT	1 cut(s)	553
BtsCI	GGATG	1 cut(s)	396
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	417
CciI	TCATGA	2 cut(s)	58, 547
CfoI	GCGC	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	553
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	9 cut(s)	26, 59, 108, 166, 208, 548, 561, 567, 573
CviJI	RGCY	7 cut(s)	161, 212, 239, 326, 338, 440, 533
CviKI_1	RGCY	7 cut(s)	161, 212, 239, 326, 338, 440, 533
CviQI	GTAC	1 cut(s)	191
DpnI	GATC	4 cut(s)	44, 130, 157, 552
DpnII	GATC	4 cut(s)	42, 128, 155, 550
DraIII	CACNNNGTG	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	531
EcoRII	CCWGG	2 cut(s)	329, 387
FaeI	CATG	9 cut(s)	29, 62, 111, 169, 211, 551, 564, 570, 576
FatI	CATG	9 cut(s)	25, 58, 107, 165, 207, 547, 560, 566, 572
FauI	CCCGC	1 cut(s)	353
FauNDI	CATATG	1 cut(s)	407
Fnu4HI	GCNGC	4 cut(s)	267, 291, 324, 501
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	267, 291, 324, 501
FspBI	CTAG	1 cut(s)	512
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	4 cut(s)	267, 291, 324, 501
HaeIII	GGCC	1 cut(s)	533
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	9 cut(s)	29, 62, 111, 169, 211, 551, 564, 570, 576
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	77, 484
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	3 cut(s)	50, 59, 548
Hpy8I	GTNNAC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	4 cut(s)	29, 266, 290, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	9 cut(s)	29, 62, 111, 169, 211, 551, 564, 570, 576
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	42, 128, 155, 550
LpnPI	CCDG	8 cut(s)	17, 18, 316, 343, 362, 374, 401, 405
Lsp1109I	GCAGC	2 cut(s)	278, 302
LweI	GCATC	2 cut(s)	133, 253
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	285
MalI	GATC	4 cut(s)	44, 130, 157, 552
MboI	GATC	4 cut(s)	42, 128, 155, 550
MflI	RGATCY	2 cut(s)	42, 128
MhlI	GDGCHC	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	1 cut(s)	375
MluNI	TGGCCA	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	3 cut(s)	106, 156, 424
MnlI	CCTC	2 cut(s)	211, 463
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	2 cut(s)	179, 519
MslI	CAYNNNNRTG	4 cut(s)	51, 63, 565, 571
Msp20I	TGGCCA	1 cut(s)	533
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	331, 389
MvaI	CCWGG	2 cut(s)	331, 389
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeI	CATATG	1 cut(s)	407
NdeII	GATC	4 cut(s)	42, 128, 155, 550
NlaIII	CATG	9 cut(s)	29, 62, 111, 169, 211, 551, 564, 570, 576
NlaIV	GGNNCC	2 cut(s)	130, 385
NsbI	TGCGCA	1 cut(s)	170
NspI	RCATGY	1 cut(s)	29
PagI	TCATGA	2 cut(s)	58, 547
PkrI	GCNGC	4 cut(s)	268, 292, 325, 502
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	329, 387
PspGI	CCWGG	2 cut(s)	329, 387
PspN4I	GGNNCC	2 cut(s)	130, 385
PsrI	GAACNNNNNNTAC	2 cut(s)	183, 215
PsuI	RGATCY	2 cut(s)	42, 128
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
RseI	CAYNNNNRTG	4 cut(s)	51, 63, 565, 571
SaqAI	TTAA	2 cut(s)	179, 519
SatI	GCNGC	4 cut(s)	267, 291, 324, 501
Sau3AI	GATC	4 cut(s)	42, 128, 155, 550
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	2 cut(s)	331, 389
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	7 cut(s)	36, 163, 222, 288, 332, 474, 547
SfaNI	GCATC	2 cut(s)	133, 253
SmiMI	CAYNNNNRTG	4 cut(s)	51, 63, 565, 571
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	3 cut(s)	323, 346, 501
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	1 cut(s)	512
StyD4I	CCNGG	2 cut(s)	329, 387
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	553
TasI	AATT	1 cut(s)	375
TauI	GCSGC	2 cut(s)	326, 503
Tru1I	TTAA	2 cut(s)	179, 519
Tru9I	TTAA	2 cut(s)	179, 519
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	2 cut(s)	266, 290
TspDTI	ATGAA	3 cut(s)	47, 196, 450
TspRI	CASTG	1 cut(s)	192
XapI	RAATTY	1 cut(s)	375
XceI	RCATGY	1 cut(s)	29
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.