Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

53499770 .. 53500997

Gene Structure 1228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G026350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAATCAGAGAATACACAACATTCCCAGATTATCGAGATCCATGGAGGTGCTCCTGGTGAAGAGACGAGTGTGGGTGGGAGTAAAATTTGTGGGGAAGCACCATATTCCAAAGAACGATCAGCTGCCATGCGCAAGCTCTTGATAGCAGTGGTACTCTGTGTTCTCTTCATGAGTGTTGAAGTGTTTGGTGGCATTGAAGCCAATAGCTTAGCAATATTGACTGATGCAGCGCATTTGCTCTCTGATGTTGCAGCCTTTGCCATCTCCTTGTTTCTCCTTTCTTACGGCTTTTTCAGGATTGAGATTCTCGGTGCTTTGGTTTCTATCCAACTCATATGGTTGCTTGCTGGGATATTGGTGTATGAAGCCATTGTTAGAATGATTAATAACACATCTGATGTGAATGGTTTTCTGATGTTTCTTGTTGCTGCATTTGGTCTAGTGGTTAATATTGGCATGGCTGTACTGTTAGGTCATGATCATGGCCATGGCCATGGACATGATGATCATGATCATCACAGCCATGGAATGACATTTTCTACTCATCATGACCATCTCCATGAGGAACACTCGAATGACGAGCACCATCATGATCATGAAGAACACTCGCATGATGAACACCATCATAGTCATGATGATCATAAACACAATGGTGCTGATGAAGGTCATGCTCATGAGCCACTCTTGGACAAGCCAAAAGACGGGCATGGCCAGAAGAAGCAACGGAACATAAACGTGCAGGGAGCTTACCTTCATGTTCTTGGGGACTTGGTTCAAAGTATCGGTGTAATGATTGGTGGGGCCATCATATGGTACAAGCCGGAATGGAAGATAGTTGATTTGATTTGCACCCTAATATTTTCTTTCATTGTTTTGGGGACAACTTTCAAGATGATGAGGAACATACTCGATGTACTAATGGAGAGCACACCAAGAGAGATTGATGCAACAAAACTTGAGAAGGGGCTGTTGGAGATGGAAGAAGTGGTGGAAATCCATGAGCTGCATATATGGGCAATCACAGTTGGGAAAGTCCTGCTGGCTTGCCATGTGAAAATCAGACCTGAAGCAAATGCAGACATGGTGCTGGGCAAAGTGATTGATTATATCAGAAGGGAGTACAACATCAGCCATGTGACTATACAAGTTGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

386

Amino Acids

43.04

Weight (kDa)

5.71

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	47 - 308	1.3e-27	Cation efflux transmembrane domain
ZT_dimer	PF16916	312 - 385	4.3e-12	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	813
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	3 cut(s)	487, 493, 712
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	1089
AfaI	GTAC	5 cut(s)	156, 468, 818, 918, 1124
AfiI	CCNNNNNNNGG	2 cut(s)	704, 813
AgsI	TTSAA	4 cut(s)	182, 200, 779, 892
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	956, 988
AleI	CACNNNNGTG	1 cut(s)	654
AluBI	AGCT	5 cut(s)	125, 139, 210, 749, 1006
AluI	AGCT	5 cut(s)	125, 139, 210, 749, 1006
Alw21I	GWGCWC	3 cut(s)	55, 588, 932
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	4 cut(s)	487, 493, 712, 804
ApeKI	GCWGC	5 cut(s)	125, 230, 254, 431, 1006
ApoI	RAATTY	1 cut(s)	87
AseI	ATTAAT	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	135, 235
AspS9I	GGNCC	1 cut(s)	804
AsuHPI	GGTGA	1 cut(s)	71
BalI	TGGCCA	3 cut(s)	489, 495, 714
Bbv12I	GWGCWC	3 cut(s)	55, 588, 932
BbvI	GCAGC	5 cut(s)	112, 242, 266, 418, 993
BccI	CCATC	6 cut(s)	272, 564, 597, 633, 815, 973
BceAI	ACGGC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	5 cut(s)	481, 508, 514, 595, 640
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	1 cut(s)	443
BisI	GCNGC	5 cut(s)	126, 231, 255, 432, 1007
BlpI	GCTNAGC	1 cut(s)	211
BlsI	GCNGC	5 cut(s)	127, 232, 256, 433, 1008
Bme1390I	CCNGG	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	804
BmiI	GGNNCC	1 cut(s)	805
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	2 cut(s)	217, 937
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
Bpu1102I	GCTNAGC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	980
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	4 cut(s)	43, 490, 496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	704, 813
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	4 cut(s)	43, 490, 496, 526
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	704, 813
BseXI	GCAGC	5 cut(s)	112, 242, 266, 418, 993
BseYI	CCCAGC	2 cut(s)	350, 1090
BsgI	GTGCAG	1 cut(s)	761
BshFI	GGCC	4 cut(s)	489, 495, 714, 806
BsiHKAI	GWGCWC	3 cut(s)	55, 588, 932
BsiSI	CCGG	1 cut(s)	824
BslFI	GGGAC	2 cut(s)	782, 895
BslI	CCNNNNNNNGG	2 cut(s)	704, 813
BsmAI	GTCTC	1 cut(s)	59
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	782, 895
BsnI	GGCC	4 cut(s)	489, 495, 714, 806
Bsp1286I	GDGCHC	3 cut(s)	55, 588, 932
Bsp143I	GATC	7 cut(s)	39, 119, 481, 508, 514, 595, 640
Bsp1720I	GCTNAGC	1 cut(s)	211
Bsp19I	CCATGG	4 cut(s)	43, 490, 496, 526
BspANI	GGCC	4 cut(s)	489, 495, 714, 806
BspHI	TCATGA	8 cut(s)	171, 478, 511, 550, 592, 598, 634, 676
BspLI	GGNNCC	1 cut(s)	805
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	4 cut(s)	43, 490, 496, 526
BssMI	GATC	7 cut(s)	39, 119, 481, 508, 514, 595, 640
BssT1I	CCWWGG	4 cut(s)	43, 490, 496, 526
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	471, 1027
Bst6I	CTCTTC	2 cut(s)	57, 173
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	4 cut(s)	137, 348, 1044, 1048
BstDEI	CTNAG	1 cut(s)	211
BstDSI	CCRYGG	4 cut(s)	43, 490, 496, 526
BstHHI	GCGC	2 cut(s)	135, 235
BstKTI	GATC	7 cut(s)	42, 122, 484, 511, 517, 598, 643
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	7 cut(s)	39, 119, 481, 508, 514, 595, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	5 cut(s)	112, 242, 266, 418, 993
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	489, 495, 714, 806
BtgI	CCRYGG	4 cut(s)	43, 490, 496, 526
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	4 cut(s)	137, 348, 1044, 1048
CciI	TCATGA	8 cut(s)	171, 478, 511, 550, 592, 598, 634, 676
CfoI	GCGC	2 cut(s)	135, 235
Cfr13I	GGNCC	1 cut(s)	804
Csp6I	GTAC	5 cut(s)	155, 467, 817, 917, 1123
CviQI	GTAC	5 cut(s)	155, 467, 817, 917, 1123
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	7 cut(s)	41, 121, 483, 510, 516, 597, 642
DpnII	GATC	7 cut(s)	39, 119, 481, 508, 514, 595, 640
EaeI	YGGCCR	3 cut(s)	487, 493, 712
Eam1104I	CTCTTC	2 cut(s)	57, 173
EarI	CTCTTC	2 cut(s)	57, 173
Eco130I	CCWWGG	4 cut(s)	43, 490, 496, 526
Eco57I	CTGAAG	1 cut(s)	1089
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	4 cut(s)	43, 490, 496, 526
ErhI	CCWWGG	4 cut(s)	43, 490, 496, 526
Esp3I	CGTCTC	1 cut(s)	59
FaqI	GGGAC	2 cut(s)	782, 895
FauNDI	CATATG	2 cut(s)	338, 812
FbaI	TGATCA	5 cut(s)	481, 508, 514, 595, 640
Fnu4HI	GCNGC	5 cut(s)	126, 231, 255, 432, 1007
Fsp4HI	GCNGC	5 cut(s)	126, 231, 255, 432, 1007
FspBI	CTAG	1 cut(s)	443
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	2 cut(s)	134, 234
GluI	GCNGC	5 cut(s)	126, 231, 255, 432, 1007
GsaI	CCCAGC	2 cut(s)	354, 1094
HaeIII	GGCC	4 cut(s)	489, 495, 714, 806
HapII	CCGG	1 cut(s)	824
HhaI	GCGC	2 cut(s)	135, 235
Hin6I	GCGC	2 cut(s)	133, 233
HinP1I	GCGC	2 cut(s)	133, 233
HinfI	GANTC	2 cut(s)	5, 307
HpaII	CCGG	1 cut(s)	824
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	6 cut(s)	10, 247, 400, 417, 1064, 1115
HpyAV	CCTTC	4 cut(s)	659, 764, 958, 1110
HpyCH4III	ACNGT	2 cut(s)	471, 1027
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	8 cut(s)	230, 254, 434, 742, 852, 950, 1009, 1079
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	211
HpySE526I	ACGT	1 cut(s)	738
HspAI	GCGC	2 cut(s)	133, 233
Ksp22I	TGATCA	5 cut(s)	481, 508, 514, 595, 640
Kzo9I	GATC	7 cut(s)	39, 119, 481, 508, 514, 595, 640
LmnI	GCTCC	2 cut(s)	58, 746
Lsp1109I	GCAGC	5 cut(s)	112, 242, 266, 418, 993
LweI	GCATC	2 cut(s)	217, 937
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	1 cut(s)	1138
MalI	GATC	7 cut(s)	41, 121, 483, 510, 516, 597, 642
MboI	GATC	7 cut(s)	39, 119, 481, 508, 514, 595, 640
MboII	GAAGA	6 cut(s)	74, 160, 614, 730, 844, 995
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	3 cut(s)	55, 588, 932
MlsI	TGGCCA	3 cut(s)	489, 495, 714
MluCI	AATT	1 cut(s)	87
MluNI	TGGCCA	3 cut(s)	489, 495, 714
MmeI	TCCRAC	2 cut(s)	355, 954
MnlI	CCTC	3 cut(s)	41, 559, 894
Mox20I	TGGCCA	3 cut(s)	489, 495, 714
MscI	TGGCCA	3 cut(s)	489, 495, 714
MseI	TTAA	3 cut(s)	387, 450, 1159
Msp20I	TGGCCA	3 cut(s)	489, 495, 714
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	824
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	260
NcoI	CCATGG	4 cut(s)	43, 490, 496, 526
NdeI	CATATG	2 cut(s)	338, 812
NdeII	GATC	7 cut(s)	39, 119, 481, 508, 514, 595, 640
NlaIV	GGNNCC	1 cut(s)	805
NmuCI	GTSAC	1 cut(s)	1138
NsbI	TGCGCA	1 cut(s)	134
OliI	CACNNNNGTG	1 cut(s)	654
PagI	TCATGA	8 cut(s)	171, 478, 511, 550, 592, 598, 634, 676
PfeI	GAWTC	2 cut(s)	5, 307
PflMI	CCANNNNNTGG	1 cut(s)	813
PkrI	GCNGC	5 cut(s)	127, 232, 256, 433, 1008
PshBI	ATTAAT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	2 cut(s)	350, 1090
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	805
PspPI	GGNCC	1 cut(s)	804
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	5 cut(s)	156, 468, 818, 918, 1124
RsaNI	GTAC	5 cut(s)	155, 467, 817, 917, 1123
SaqAI	TTAA	3 cut(s)	387, 450, 1159
SatI	GCNGC	5 cut(s)	126, 231, 255, 432, 1007
Sau3AI	GATC	7 cut(s)	39, 119, 481, 508, 514, 595, 640
Sau96I	GGNCC	1 cut(s)	804
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	3 cut(s)	55, 588, 932
SfaNI	GCATC	2 cut(s)	217, 937
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
Sse9I	AATT	1 cut(s)	87
SspI	AATATT	3 cut(s)	219, 454, 861
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	4 cut(s)	43, 490, 496, 526
TaaI	ACNGT	2 cut(s)	471, 1027
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	3 cut(s)	36, 575, 912
TasI	AATT	1 cut(s)	87
TatI	WGTACW	3 cut(s)	466, 916, 1122
TfiI	GAWTC	2 cut(s)	5, 307
Tru1I	TTAA	3 cut(s)	387, 450, 1159
Tru9I	TTAA	3 cut(s)	387, 450, 1159
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	1138
TseI	GCWGC	5 cut(s)	125, 230, 254, 431, 1006
Tsp45I	GTSAC	1 cut(s)	1138
TspDTI	ATGAA	7 cut(s)	160, 381, 615, 633, 678, 746, 859
TspGWI	ACGGA	1 cut(s)	742
TspRI	CASTG	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	813
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	87
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.