Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

12272820 .. 12273896

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGCGCAAGCTTTTAATAGCAGTGGTACTTTGTGTTCTGTTCATGGCTGTTGAGGTAGTTGGTGGCATTGAAGCCAATAGTTTAGCAATATTGACAGATGCAGCACATTTGCTTTCGGATGTTGCAGCATTTGCCATCTCCTTGTTCTCTTTGTGGGCGGCTGGCTGGGAAGCCACTCCCCGTCAGTCTTACGGGTTTTTTAGGATTGAAATTCTTGGTGCCCTGGTTTCCATCCAGCTCATATGGTTGCTTGCCGGGATATTGGTATATGAAGCCATAGTTAGAATGATACATGACACAGGTGAGGTGAATGGATTTCTAATGTTTCTCGTTGCCGCATTTGGTCTAGTGGTTAATATAGCCATGGCCATACTGTTAGGCCATGATCATGGACACGGACATGGACATGGACATGATCACGGTGATCACAATCACGGAATGACTATTTCTGCTCATCACCATCACCACGATCATGCTCACGAGAAACACTCGCATGGTCATGGTCATGATCATGAGGAGCACTCACATGATCATGAGCACCCTCACACTCATGAAGATGATCATGAACACCACCATGCCGACAAGGATCTTGCTGAGCCACTGTTGGATAAGCCAAAAGATGGGCAAGTAGAGAAGAAGCAACGGAACATAAATCTACAGGGTGCTTATCTCCATGTGCTTGGAGACTCGGTACAAAGTATTGGGGTAATGATTGGCGGGGCAATCATATGGGCCAAGCCGGAGTGGAAGATAGTTGATTTGATCTGCACCCTAATTTTTTCGGTCATTGTTTTGGGGACAACTATTAAGATGATGCGGAACATACTTGATGTCCTGATGGAGAGCACGCCGAGAGAGATTGATGCAACGAGACTTGAAACGGGACTGTTGGAGATGGACGAAGTGGTAGCAGTCCACGAGCTGCATATATGGGCTATCACGGTGGGGAAAGTCCTGCTGGCTTGCCATGTGAAAGTTAGACCAGAAGCAAATGCAGACACGGTGCTGGAGGACGTAATAGCTTATATCAGAAGGGAGTATAACATCAGCCATGTCACGATCCAAATCGAGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

359

Amino Acids

39.86

Weight (kDa)

5.85

Isoelectric Point (pI)

27.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	4 - 280	2.3e-36	Cation efflux transmembrane domain
ZT_dimer	PF16916	284 - 357	1.2e-12	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	218
AccB7I	CCANNNNNTGG	1 cut(s)	620
AciI	CCGC	4 cut(s)	158, 336, 717, 817
AclWI	GGATC	2 cut(s)	594, 1054
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	210
AfaI	GTAC	2 cut(s)	27, 693
AfiI	CCNNNNNNNGG	1 cut(s)	620
AgsI	TTSAA	3 cut(s)	71, 209, 878
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	4 cut(s)	10, 238, 922, 1022
AluI	AGCT	4 cut(s)	10, 238, 922, 1022
Alw21I	GWGCWC	3 cut(s)	522, 540, 848
Alw26I	GTCTC	2 cut(s)	678, 865
AlwI	GGATC	2 cut(s)	594, 1054
AoxI	GGCC	3 cut(s)	366, 379, 732
ApeKI	GCWGC	3 cut(s)	101, 125, 922
ApoI	RAATTY	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	732
AsuC2I	CCSGG	1 cut(s)	256
AsuHPI	GGTGA	5 cut(s)	314, 319, 434, 449, 455
BaeGI	GKGCMC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	218
BauI	CACGAG	2 cut(s)	479, 917
Bbv12I	GWGCWC	3 cut(s)	522, 540, 848
BbvI	GCAGC	3 cut(s)	113, 137, 909
BccI	CCATC	6 cut(s)	143, 239, 468, 614, 832, 889
BciT130I	CCWGG	1 cut(s)	224
BclI	TGATCA	6 cut(s)	385, 415, 424, 508, 529, 559
BcnI	CCSGG	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	678, 865
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	656
BisI	GCNGC	5 cut(s)	102, 126, 159, 336, 923
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	5 cut(s)	103, 127, 160, 337, 924
Bme1390I	CCNGG	2 cut(s)	224, 256
BmgT120I	GGNCC	1 cut(s)	732
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	224, 256
BmsI	GCATC	3 cut(s)	88, 804, 853
BplI	GAGNNNNNCTC	4 cut(s)	473, 505, 506, 538
BpmI	CTGGAG	1 cut(s)	1028
Bpu1102I	GCTNAGC	1 cut(s)	594
BpuMI	CCSGG	1 cut(s)	256
BsaBI	GATNNNNATC	2 cut(s)	429, 1064
BsaJI	CCNNGG	2 cut(s)	222, 363
BsaXI	ACNNNNNCTCC	2 cut(s)	675, 705
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse8I	GATNNNNATC	2 cut(s)	429, 1064
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	222, 363
BseGI	GGATG	2 cut(s)	124, 231
BseJI	GATNNNNATC	2 cut(s)	429, 1064
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMII	CTCAG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	113, 137, 909
BseYI	CCCAGC	1 cut(s)	165
BsgI	GTGCAG	1 cut(s)	751
BshFI	GGCC	3 cut(s)	368, 381, 734
BshNI	GGYRCC	1 cut(s)	218
BsiHKAI	GWGCWC	3 cut(s)	522, 540, 848
BsiSI	CCGG	2 cut(s)	255, 740
BslFI	GGGAC	2 cut(s)	811, 897
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	2 cut(s)	678, 865
BsmFI	GGGAC	2 cut(s)	811, 897
BsnI	GGCC	3 cut(s)	368, 381, 734
Bsp1286I	GDGCHC	4 cut(s)	223, 522, 540, 848
Bsp1720I	GCTNAGC	1 cut(s)	594
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	4 cut(s)	158, 336, 717, 817
BspANI	GGCC	3 cut(s)	368, 381, 734
BspCNI	CTCAG	1 cut(s)	586
BspHI	TCATGA	5 cut(s)	505, 511, 532, 550, 562
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	594, 1054
BspT107I	GGYRCC	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	222, 363
BssSI	CACGAG	2 cut(s)	479, 917
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	2 cut(s)	479, 917
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	6 cut(s)	375, 422, 603, 888, 943, 1003
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	6 cut(s)	8, 163, 252, 848, 960, 964
BstDEI	CTNAG	1 cut(s)	594
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	124, 231
BstHHI	GCGC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	678, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	222, 254
BstSFI	CTRYAG	1 cut(s)	656
BstSLI	GKGCMC	1 cut(s)	223
BstV1I	GCAGC	3 cut(s)	113, 137, 909
BstX2I	RGATCY	1 cut(s)	586
BstXI	CCANNNNNNTGG	2 cut(s)	389, 680
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	368, 381, 734
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	124, 231
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 599
Cac8I	GCNNGC	6 cut(s)	8, 163, 252, 848, 960, 964
CciI	TCATGA	5 cut(s)	505, 511, 532, 550, 562
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	732
Csp6I	GTAC	2 cut(s)	26, 692
CviQI	GTAC	2 cut(s)	26, 692
DdeI	CTNAG	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaqI	GGGAC	2 cut(s)	811, 897
FauI	CCCGC	1 cut(s)	710
FauNDI	CATATG	2 cut(s)	242, 728
FbaI	TGATCA	6 cut(s)	385, 415, 424, 508, 529, 559
Fnu4HI	GCNGC	5 cut(s)	102, 126, 159, 336, 923
FokI	GGATG	2 cut(s)	131, 218
Fsp4HI	GCNGC	5 cut(s)	102, 126, 159, 336, 923
FspBI	CTAG	1 cut(s)	347
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	5 cut(s)	102, 126, 159, 336, 923
GsaI	CCCAGC	1 cut(s)	169
GsuI	CTGGAG	1 cut(s)	1028
HaeIII	GGCC	3 cut(s)	368, 381, 734
HapII	CCGG	2 cut(s)	255, 740
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	1 cut(s)	686
HpaII	CCGG	2 cut(s)	255, 740
HphI	GGTGA	5 cut(s)	314, 319, 434, 449, 455
Hpy166II	GTNNAC	1 cut(s)	916
Hpy188I	TCNGA	2 cut(s)	118, 1031
Hpy188III	TCNNGA	8 cut(s)	479, 506, 512, 533, 551, 563, 835, 1057
Hpy8I	GTNNAC	1 cut(s)	916
HpyAV	CCTTC	1 cut(s)	1026
HpyCH4III	ACNGT	6 cut(s)	375, 422, 603, 888, 943, 1003
HpyCH4IV	ACGT	1 cut(s)	1014
HpyCH4V	TGCA	6 cut(s)	101, 125, 768, 866, 925, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	1 cut(s)	1014
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	6 cut(s)	385, 415, 424, 508, 529, 559
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	3 cut(s)	113, 137, 909
LweI	GCATC	3 cut(s)	88, 804, 853
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	1014
MaeIII	GTNAC	1 cut(s)	1054
MboII	GAAGA	3 cut(s)	566, 646, 760
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	4 cut(s)	223, 522, 540, 848
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	2 cut(s)	210, 774
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	680
MmeI	TCCRAC	2 cut(s)	585, 870
MnlI	CCTC	5 cut(s)	46, 298, 508, 552, 1003
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	3 cut(s)	14, 354, 807
Msp20I	TGGCCA	1 cut(s)	368
MspI	CCGG	2 cut(s)	255, 740
MspR9I	CCNGG	2 cut(s)	224, 256
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	1 cut(s)	256
NcoI	CCATGG	1 cut(s)	363
NdeI	CATATG	2 cut(s)	242, 728
NlaIV	GGNNCC	1 cut(s)	220
NmeAIII	GCCGAG	1 cut(s)	876
NmuCI	GTSAC	1 cut(s)	1054
NsbI	TGCGCA	1 cut(s)	5
PagI	TCATGA	5 cut(s)	505, 511, 532, 550, 562
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	5 cut(s)	103, 127, 160, 337, 924
PleI	GAGTC	1 cut(s)	680
PpsI	GAGTC	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	732
PsrI	GAACNNNNNNTAC	2 cut(s)	18, 50
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	2 cut(s)	27, 693
RsaNI	GTAC	2 cut(s)	26, 692
SaqAI	TTAA	3 cut(s)	14, 354, 807
SatI	GCNGC	5 cut(s)	102, 126, 159, 336, 923
Sau96I	GGNCC	1 cut(s)	732
SchI	GAGTC	1 cut(s)	680
ScrFI	CCNGG	2 cut(s)	224, 256
SduI	GDGCHC	4 cut(s)	223, 522, 540, 848
SetI	ASST	8 cut(s)	12, 57, 240, 304, 309, 924, 1017, 1024
SfaNI	GCATC	3 cut(s)	88, 804, 853
SfcI	CTRYAG	1 cut(s)	656
Sse9I	AATT	2 cut(s)	210, 774
SsiI	CCGC	4 cut(s)	158, 336, 717, 817
SspI	AATATT	1 cut(s)	90
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	222, 254
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	6 cut(s)	375, 422, 603, 888, 943, 1003
TaiI	ACGT	1 cut(s)	1017
TaqI	TCGA	1 cut(s)	1068
TaqII	GACCGA	1 cut(s)	772
TasI	AATT	2 cut(s)	210, 774
TauI	GCSGC	2 cut(s)	161, 338
Tru1I	TTAA	3 cut(s)	14, 354, 807
Tru9I	TTAA	3 cut(s)	14, 354, 807
TscAI	CASTG	2 cut(s)	27, 606
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	3 cut(s)	101, 125, 922
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	4 cut(s)	31, 285, 567, 579
TspGWI	ACGGA	3 cut(s)	411, 450, 658
TspRI	CASTG	2 cut(s)	27, 606
Van91I	CCANNNNNTGG	1 cut(s)	620
XapI	RAATTY	1 cut(s)	210
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.