Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007111.1

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

3548 .. 4626

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007111.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggaatcagagaatacacaacattcccagattattgagatccatggagatgctcctggtgaacagacgagtgtgggttggagtaagatttgtggggaagcaccgtgtggactgtcggatgttggaccgcattctaaagattccaaagaacgatcagctgccatgcgcaagctcttgatagcagtggtactctgtgttctcttcatgggtgttgaagtgtttggtggcattgaagccaatagcttagcaatattgactgatgcagcacatttgctctctgatgttgcagcctttgccatctccttgttctccttgtgggctgctagctgggaaaccactcctcgtcagtcttacggctttttcaggattgagattctcggtgctttggtttctatccaactcatatggttgcttgctgggatattggtgtatgaagccattgttagaatgattaataacacatctgatgtgaatggttttctgatgtttcttgttgctgcatttggtctagtggttaatattggcatggctgtactgttaggccatgatcatggtcatgatcatggccacggccatggacatggtcatggccacggccatggacatgatgatcatgatcatcacagccatggaatgacattttctactcatcatcaccatcgggagcttaccttcatgttcttggggacttggttcaaagtatcggtgaacatacttgatgtactaatggagagcacaccaagggagattgatgcaacgaaacttgagaaggggctattggagatgggagaagtggtggaaatccatgagctgcatatatgggcaatcacagttgggaaagtcctgctggcttgccatgtgaaaatcagacctgaagcaaatgcagacatggtgctggacaaagtgattgattatatcagaagggagcacaacatcagccatgtgactatacaagttgagcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

321

Amino Acids

35.42

Weight (kDa)

5.86

Isoelectric Point (pI)

27.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	167
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	1 cut(s)	34
AcoI	YGGCCR	4 cut(s)	565, 571, 589, 595
AcuI	CTGAAG	1 cut(s)	894
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	189, 534, 723
AgsI	TTSAA	3 cut(s)	215, 233, 697
AjnI	CCWGG	1 cut(s)	55
AjuI	GAANNNNNNNTTGG	2 cut(s)	761, 793
AluBI	AGCT	6 cut(s)	158, 172, 243, 327, 667, 811
AluI	AGCT	6 cut(s)	158, 172, 243, 327, 667, 811
Alw21I	GWGCWC	2 cut(s)	737, 930
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	5 cut(s)	541, 565, 571, 589, 595
ApeKI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 811
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	3 cut(s)	71, 647, 718
AsuNHI	GCTAGC	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	125
BalI	TGGCCA	2 cut(s)	567, 591
Bbv12I	GWGCWC	2 cut(s)	737, 930
BbvI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 798
BccI	CCATC	3 cut(s)	305, 666, 778
BceAI	ACGGC	3 cut(s)	370, 586, 610
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	4 cut(s)	547, 559, 610, 616
BfaI	CTAG	2 cut(s)	324, 509
BisI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 812
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 813
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	3 cut(s)	40, 250, 742
BmtI	GCTAGC	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	785
BsaBI	GATNNNNATC	1 cut(s)	615
BsaJI	CCNNGG	7 cut(s)	43, 568, 574, 592, 598, 628, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	780, 810
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	7 cut(s)	43, 568, 574, 592, 598, 628, 740
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	615
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 798
BseYI	CCCAGC	2 cut(s)	327, 416
BshFI	GGCC	5 cut(s)	543, 567, 573, 591, 597
BsiHKAI	GWGCWC	2 cut(s)	737, 930
BslFI	GGGAC	1 cut(s)	700
BsmFI	GGGAC	1 cut(s)	700
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	5 cut(s)	543, 567, 573, 591, 597
Bsp1286I	GDGCHC	2 cut(s)	737, 930
Bsp143I	GATC	6 cut(s)	39, 152, 547, 559, 610, 616
Bsp1720I	GCTNAGC	1 cut(s)	244
Bsp19I	CCATGG	4 cut(s)	43, 574, 598, 628
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	5 cut(s)	543, 567, 573, 591, 597
BspHI	TCATGA	2 cut(s)	556, 613
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	7 cut(s)	43, 568, 574, 592, 598, 628, 740
BssMI	GATC	6 cut(s)	39, 152, 547, 559, 610, 616
BssT1I	CCWWGG	5 cut(s)	43, 574, 598, 628, 740
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	4 cut(s)	105, 114, 537, 832
Bst6I	CTCTTC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	5 cut(s)	170, 325, 414, 849, 853
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	6 cut(s)	43, 568, 574, 592, 598, 628
BstF5I	GGATG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	6 cut(s)	42, 155, 550, 562, 613, 619
BstMBI	GATC	6 cut(s)	39, 152, 547, 559, 610, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 798
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	4 cut(s)	551, 575, 581, 599
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	5 cut(s)	543, 567, 573, 591, 597
BtgI	CCRYGG	6 cut(s)	43, 568, 574, 592, 598, 628
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	5 cut(s)	170, 325, 414, 849, 853
CciI	TCATGA	2 cut(s)	556, 613
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	3 cut(s)	188, 533, 722
CviQI	GTAC	3 cut(s)	188, 533, 722
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	6 cut(s)	41, 154, 549, 561, 612, 618
DpnII	GATC	6 cut(s)	39, 152, 547, 559, 610, 616
DraIII	CACNNNGTG	1 cut(s)	107
EaeI	YGGCCR	4 cut(s)	565, 571, 589, 595
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	5 cut(s)	43, 574, 598, 628, 740
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	894
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	5 cut(s)	43, 574, 598, 628, 740
ErhI	CCWWGG	5 cut(s)	43, 574, 598, 628, 740
FaqI	GGGAC	1 cut(s)	700
FauNDI	CATATG	1 cut(s)	404
FbaI	TGATCA	4 cut(s)	547, 559, 610, 616
Fnu4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 812
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 812
FspBI	CTAG	2 cut(s)	324, 509
FspI	TGCGCA	1 cut(s)	167
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 812
GsaI	CCCAGC	2 cut(s)	331, 420
HaeIII	GGCC	5 cut(s)	543, 567, 573, 591, 597
HhaI	GCGC	1 cut(s)	168
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	5, 140, 373
HphI	GGTGA	3 cut(s)	71, 647, 718
Hpy166II	GTNNAC	3 cut(s)	62, 110, 709
Hpy188I	TCNGA	7 cut(s)	10, 118, 280, 466, 483, 869, 920
Hpy188III	TCNNGA	5 cut(s)	175, 364, 557, 614, 662
Hpy8I	GTNNAC	3 cut(s)	62, 110, 709
HpyAV	CCTTC	3 cut(s)	682, 763, 915
HpyCH4III	ACNGT	4 cut(s)	105, 114, 537, 832
HpyCH4V	TGCA	6 cut(s)	263, 287, 500, 755, 814, 884
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	166
Ksp22I	TGATCA	4 cut(s)	547, 559, 610, 616
Kzo9I	GATC	6 cut(s)	39, 152, 547, 559, 610, 616
LmnI	GCTCC	3 cut(s)	58, 664, 925
Lsp1109I	GCAGC	6 cut(s)	145, 275, 299, 307, 484, 798
LweI	GCATC	3 cut(s)	40, 250, 742
MaeI	CTAG	2 cut(s)	324, 509
MaeIII	GTNAC	1 cut(s)	943
MalI	GATC	6 cut(s)	41, 154, 549, 561, 612, 618
MboI	GATC	6 cut(s)	39, 152, 547, 559, 610, 616
MboII	GAAGA	1 cut(s)	193
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	737, 930
MlsI	TGGCCA	2 cut(s)	567, 591
MluNI	TGGCCA	2 cut(s)	567, 591
MmeI	TCCRAC	4 cut(s)	59, 96, 103, 421
MnlI	CCTC	1 cut(s)	351
Mox20I	TGGCCA	2 cut(s)	567, 591
MscI	TGGCCA	2 cut(s)	567, 591
MseI	TTAA	3 cut(s)	453, 516, 964
Msp20I	TGGCCA	2 cut(s)	567, 591
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	4 cut(s)	43, 574, 598, 628
NdeI	CATATG	1 cut(s)	404
NdeII	GATC	6 cut(s)	39, 152, 547, 559, 610, 616
NheI	GCTAGC	1 cut(s)	323
NmuCI	GTSAC	1 cut(s)	943
NsbI	TGCGCA	1 cut(s)	167
PagI	TCATGA	2 cut(s)	556, 613
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	3 cut(s)	5, 140, 373
PflFI	GACNNNGTC	1 cut(s)	582
PkrI	GCNGC	6 cut(s)	160, 265, 289, 322, 499, 813
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	2 cut(s)	327, 416
PspGI	CCWGG	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	125
PsrI	GAACNNNNNNTAC	2 cut(s)	180, 212
PsuI	RGATCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	582
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	3 cut(s)	189, 534, 723
RsaNI	GTAC	3 cut(s)	188, 533, 722
SaqAI	TTAA	3 cut(s)	453, 516, 964
SatI	GCNGC	6 cut(s)	159, 264, 288, 321, 498, 812
Sau3AI	GATC	6 cut(s)	39, 152, 547, 559, 610, 616
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	737, 930
SetI	ASST	8 cut(s)	160, 174, 245, 329, 669, 674, 813, 874
SfaNI	GCATC	3 cut(s)	40, 250, 742
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SsiI	CCGC	1 cut(s)	128
SspI	AATATT	2 cut(s)	252, 520
SspMI	CTAG	2 cut(s)	324, 509
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	5 cut(s)	43, 574, 598, 628, 740
TaaI	ACNGT	4 cut(s)	105, 114, 537, 832
TatI	WGTACW	2 cut(s)	532, 721
TfiI	GAWTC	3 cut(s)	5, 140, 373
Tru1I	TTAA	3 cut(s)	453, 516, 964
Tru9I	TTAA	3 cut(s)	453, 516, 964
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	943
TseI	GCWGC	6 cut(s)	158, 263, 287, 320, 497, 811
Tsp45I	GTSAC	1 cut(s)	943
TspDTI	ATGAA	3 cut(s)	193, 447, 664
TspRI	CASTG	1 cut(s)	189
Tth111I	GACNNNGTC	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	453
XspI	CTAG	2 cut(s)	324, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.