Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005244

Physical Location & Seq

Genomic Coordinates Forward (+)

22937170 .. 22938577

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGATTCAAGAAGAAGTAAAGTTTGTGGAGAAACAGCTTGTGGGTTTTCAACATCTTCAAGTGATGCTAAGAAACGAGCTGCTTCAATGCGAAAGCTCTGTTTCGTTGTGGTGTTATGTCTTTTGTTCATGAGCATAGAAGTTGTTTGTGGCATTAAGGCTAACAGTTTGGCTATATTAGCAGATGCAGCTCATTTGCTCACTGATGTTGGTGCTTTTGCTATCTCTATGCTCTCCTTGTGGGCTTCTTCTTGGGAAGCAAATCCGCGACAGAGTTATGGGTTCTTCAGGATAGAGATTTTAGGCACTCTTGTCTCAATCCAGCTCATTTGGTTACTCACTGGGATTTTGGTCTACGAAGCCGTAACTAGACTCGTTCAAGAGACCAATGATGATGTTGATGGTTTCTTTATGGTTCTTGTTGCTGCTTTTGGTTTAGTTGTAAACATCATAATGATTGTTGTGCTTGGACATGATCACGGACATGGGCATGATCATGGTCACAGTCATGATCATGGTCATAGTTATGGGGAAAGAGCTGAGCAGTTGTTGGAGAAATCCAAGGAAATAAGGAACATTAATGTGCAAGGGGCTTATCTTCATGTTCTTGGGGATTTAATTCAGAGCATTGGGGTAATGATTGGAGGGGGTATGATTTGGTATAACCCTAAATGGAAAGTAATTGACTTGATATGCACGTTATTCTTTTCAGTTATTGTTTTAGGGACAACCATTAAGATGCTTCGAAGCATACTTGAAGTTCTAATGGAGAGCACACCGAGAGAGATAGACGCGAGGCAGCTCGAAAAGGGATTGATGGAAATTGAGGAAGTTGTGGATGTTCATGAGCTGCACATATGGGCAATTACAGTTGGAAAAGCTCTGTTTTCTTGTCATGTCAAGGTTAGACCAGAAGCTGGTGATGAAATGGTGCTGAACAAAGTGATCGATTACATCTGGAGAGAGTATCGTATCAGTCACGTTACGATACAAATCGAGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0006873 GO:0006875 GO:0006882 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031090 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072503 GO:0072507 GO:0072509 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

334

Amino Acids

37.34

Weight (kDa)

6.0

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	36 - 256	2.5e-39	Cation efflux transmembrane domain
ZT_dimer	PF16916	260 - 333	1.4e-10	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT2G46800 AT3G61940
fragaria_vesca	FvH4_7g17780
malus_domestica	MD01G1089100.v1.1 MD07G1160600.v1.1
prunus_persica	Prupe.2G198700_v2.0.a1 Prupe.2G198700_v2.0.a1
pyrus_communis	pycom01g11340 pycom07g15660
rosa_chinensis	RchiOBHm_Chr1g0361171
rosa_laevigata	RLG00000027742 RLG00000027743
rosa_multiflora	Rmu_sc0001816.1_g000005 Rmu_sc0001816.1_g000011 Rmu_sc0007111.1_g000001 Rmu_sc0007111.1_g000012
rosa_roxburghii	Rroxscaffold_4G00295300 Rroxscaffold_4G00295320
rosa_rugosa	Rorug01G0287200
rosa_samantha	Rh1AG298000 Rh1BG262000 Rh1CG279400 Rh1DG291900
rosa_wichuraiana	Rw1G026340 Rw1G026350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	917
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	2 cut(s)	268, 794
AciI	CCGC	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	917
AgsI	TTSAA	6 cut(s)	9, 51, 60, 87, 380, 758
Alw21I	GWGCWC	1 cut(s)	776
Alw26I	GTCTC	2 cut(s)	319, 377
AlwNI	CAGNNNCTG	1 cut(s)	917
ApeKI	GCWGC	5 cut(s)	80, 188, 425, 799, 850
AseI	ATTAAT	1 cut(s)	579
AsuHPI	GGTGA	1 cut(s)	932
AsuII	TTCGAA	1 cut(s)	745
Bbv12I	GWGCWC	1 cut(s)	776
BbvI	GCAGC	5 cut(s)	67, 200, 412, 811, 837
BccI	CCATC	2 cut(s)	395, 811
BceAI	ACGGC	1 cut(s)	347
BclI	TGATCA	3 cut(s)	475, 493, 511
BcoDI	GTCTC	2 cut(s)	319, 377
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	5 cut(s)	81, 189, 426, 800, 851
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	5 cut(s)	82, 190, 427, 801, 852
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	3 cut(s)	55, 175, 729
BmuI	ACTGGG	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	979
Bpu1102I	GCTNAGC	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	745
Bsa29I	ATCGAT	1 cut(s)	948
BsaBI	GATNNNNATC	1 cut(s)	992
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	1 cut(s)	917
Bse1I	ACTGG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	992
BseCI	ATCGAT	1 cut(s)	948
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	1 cut(s)	844
BseJI	GATNNNNATC	1 cut(s)	992
BseLI	CCNNNNNNNGG	1 cut(s)	917
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	346
BseXI	GCAGC	5 cut(s)	67, 200, 412, 811, 837
BsgI	GTGCAG	1 cut(s)	836
Bsh1236I	CGCG	2 cut(s)	268, 794
BshVI	ATCGAT	1 cut(s)	948
BsiHKAI	GWGCWC	1 cut(s)	776
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	1 cut(s)	917
BsmAI	GTCTC	2 cut(s)	319, 377
BsmFI	GGGAC	1 cut(s)	739
Bso31I	GGTCTC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	745
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp143I	GATC	4 cut(s)	475, 493, 511, 945
Bsp1720I	GCTNAGC	1 cut(s)	540
BspACI	CCGC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	532
BspDI	ATCGAT	1 cut(s)	948
BspFNI	CGCG	2 cut(s)	268, 794
BspHI	TCATGA	3 cut(s)	129, 508, 844
BspT104I	TTCGAA	1 cut(s)	745
BspTNI	GGTCTC	1 cut(s)	377
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	4 cut(s)	475, 493, 511, 945
BssT1I	CCWWGG	1 cut(s)	561
Bst4CI	ACNGT	3 cut(s)	167, 506, 871
BstBI	TTCGAA	1 cut(s)	745
BstDEI	CTNAG	2 cut(s)	69, 540
BstF5I	GGATG	1 cut(s)	844
BstFNI	CGCG	2 cut(s)	268, 794
BstKTI	GATC	4 cut(s)	478, 496, 514, 948
BstMAI	GTCTC	2 cut(s)	319, 377
BstMBI	GATC	4 cut(s)	475, 493, 511, 945
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 188
BstUI	CGCG	2 cut(s)	268, 794
BstV1I	GCAGC	5 cut(s)	67, 200, 412, 811, 837
Bsu15I	ATCGAT	1 cut(s)	948
BsuTUI	ATCGAT	1 cut(s)	948
BtsCI	GGATG	1 cut(s)	844
BtsIMutI	CAGTG	2 cut(s)	201, 339
CaiI	CAGNNNCTG	1 cut(s)	917
CciI	TCATGA	3 cut(s)	129, 508, 844
ClaI	ATCGAT	1 cut(s)	948
CseI	GACGC	1 cut(s)	800
DdeI	CTNAG	2 cut(s)	69, 540
DpnI	GATC	4 cut(s)	477, 495, 513, 947
DpnII	GATC	4 cut(s)	475, 493, 511, 945
Eco130I	CCWWGG	1 cut(s)	561
Eco31I	GGTCTC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	561
FaqI	GGGAC	1 cut(s)	739
FauNDI	CATATG	1 cut(s)	857
FbaI	TGATCA	3 cut(s)	475, 493, 511
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	81, 189, 426, 800, 851
FokI	GGATG	1 cut(s)	851
Fsp4HI	GCNGC	5 cut(s)	81, 189, 426, 800, 851
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	5 cut(s)	81, 189, 426, 800, 851
GsuI	CTGGAG	1 cut(s)	979
HgaI	GACGC	1 cut(s)	800
HinfI	GANTC	2 cut(s)	5, 372
HphI	GGTGA	1 cut(s)	932
Hpy166II	GTNNAC	2 cut(s)	355, 445
Hpy188I	TCNGA	1 cut(s)	624
Hpy188III	TCNNGA	7 cut(s)	9, 130, 289, 380, 509, 845, 958
Hpy8I	GTNNAC	2 cut(s)	355, 445
HpyCH4III	ACNGT	3 cut(s)	167, 506, 871
HpyCH4IV	ACGT	2 cut(s)	698, 981
HpyCH4V	TGCA	4 cut(s)	188, 586, 696, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 188
HpyF3I	CTNAG	2 cut(s)	69, 540
HpySE526I	ACGT	2 cut(s)	698, 981
Ksp22I	TGATCA	3 cut(s)	475, 493, 511
Kzo9I	GATC	4 cut(s)	475, 493, 511, 945
LpnPI	CCDG	6 cut(s)	274, 327, 335, 903, 924, 943
Lsp1109I	GCAGC	5 cut(s)	67, 200, 412, 811, 837
LweI	GCATC	3 cut(s)	55, 175, 729
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	2 cut(s)	698, 981
MaeIII	GTNAC	5 cut(s)	333, 364, 500, 977, 982
MalI	GATC	4 cut(s)	477, 495, 513, 947
MboI	GATC	4 cut(s)	475, 493, 511, 945
MboII	GAAGA	5 cut(s)	24, 48, 240, 277, 590
MhlI	GDGCHC	1 cut(s)	776
MluCI	AATT	4 cut(s)	618, 681, 822, 864
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	2 cut(s)	531, 853
MnlI	CCTC	3 cut(s)	638, 789, 820
MseI	TTAA	5 cut(s)	156, 579, 617, 735, 1003
MslI	CAYNNNNRTG	9 cut(s)	452, 483, 489, 495, 507, 513, 525, 581, 737
MvnI	CGCG	2 cut(s)	268, 794
MwoI	GCNNNNNNNGC	2 cut(s)	179, 188
NdeI	CATATG	1 cut(s)	857
NdeII	GATC	4 cut(s)	475, 493, 511, 945
NmuCI	GTSAC	2 cut(s)	500, 977
NspV	TTCGAA	1 cut(s)	745
PagI	TCATGA	3 cut(s)	129, 508, 844
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	917
PkrI	GCNGC	5 cut(s)	82, 190, 427, 801, 852
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	579
PstNI	CAGNNNCTG	1 cut(s)	917
RseI	CAYNNNNRTG	9 cut(s)	452, 483, 489, 495, 507, 513, 525, 581, 737
SaqAI	TTAA	5 cut(s)	156, 579, 617, 735, 1003
SatI	GCNGC	5 cut(s)	81, 189, 426, 800, 851
Sau3AI	GATC	4 cut(s)	475, 493, 511, 945
SchI	GAGTC	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	776
SfaNI	GCATC	3 cut(s)	55, 175, 729
SfuI	TTCGAA	1 cut(s)	745
SmiMI	CAYNNNNRTG	9 cut(s)	452, 483, 489, 495, 507, 513, 525, 581, 737
Sse9I	AATT	4 cut(s)	618, 681, 822, 864
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	3 cut(s)	167, 506, 871
TaiI	ACGT	2 cut(s)	701, 984
TaqI	TCGA	4 cut(s)	745, 804, 948, 996
TasI	AATT	4 cut(s)	618, 681, 822, 864
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	5 cut(s)	156, 579, 617, 735, 1003
Tru9I	TTAA	5 cut(s)	156, 579, 617, 735, 1003
TscAI	CASTG	2 cut(s)	208, 346
TseFI	GTSAC	2 cut(s)	500, 977
TseI	GCWGC	5 cut(s)	80, 188, 425, 799, 850
Tsp45I	GTSAC	2 cut(s)	500, 977
TspDTI	ATGAA	4 cut(s)	118, 590, 833, 939
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	2 cut(s)	208, 346
Van91I	CCANNNNNTGG	1 cut(s)	917
VspI	ATTAAT	1 cut(s)	579
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.