AT3G02740

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
590425 .. 593228
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02740.2

Sequence Viewer

Length: 1467 bp
ATGGATCTCAGGCGGAGACAGTGGTTCTTGTCGGCTATTTTGCTGTCGGCGGCGTTGCTGATTGACCCGCAATTCTCGACGGCGGCGACGGCTTCGGAGAATTTGGTATTTGAAGTTCGAAGCAAGTTCGCCGGAAAAAGAGTAAAAGATCTTGGAGCTCTCAGAGCTCACGACGTCCACCGTCACTCAAGACTCCTCTCCGCCATCGATATTCCTCTCGGCGGCGATAGCCAGCCTGAGTCTATTGGTTTATACTTCGCTAAAATCGGACTCGGAACTCCATCAAGAGACTTCCATGTTCAAGTTGATACAGGAAGTGATATCTTATGGGTGAATTGTGCTGGTTGCATCAGATGTCCTAGGAAAAGTGATCTGGTAGAGCTGACACCTTATGATGTGGATGCTTCGTCCACTGCAAAATCTGTTTCGTGCAGTGACAACTTTTGCTCTTACGTTAACCAAAGATCTGAGTGTCACTCAGGTTCTACTTGTCAGTATGTTATTATGTATGGCGATGGGAGTTCAACTAATGGATACTTGGTGAAAGATGTTGTTCATTTGGATTTAGTTACTGGAAATCGTCAAACCGGTTCCACCAACGGAACTATTATCTTCGGATGTGGGTCTAAACAGTCTGGTCAGCTCGGAGAGTCACAAGCTGCGGTTGATGGGATAATGGGATTTGGACAATCAAATTCATCGTTTATATCGCAGCTAGCTTCACAAGGAAAGGTCAAAAGGTCTTTTGCGCATTGTTTGGATAACAACAATGGAGGTGGTATATTCGCCATTGGAGAAGTCGTGTCGCCGAAAGTAAAGACTACACCTATGCTCTCTAAATCAGCTCACTATAGTGTCAACCTCAATGCAATTGAAGTTGGTAATTCAGTTTTAGAACTTTCTTCGAATGCTTTTGATTCGGGAGATGACAAAGGAGTTATTATTGATAGTGGTACAACTCTGGTGTATCTTCCTGATGCTGTTTATAACCCGTTACTGAATGAGATATTGGCTTCACATCCAGAGCTTACTTTGCATACAGTTCAAGAGTCGTTTACTTGTTTCCATTATACAGACAAATTAGATCGGTTCCCAACTGTCACTTTTCAGTTTGACAAGTCTGTTTCATTGGCGGTTTATCCTCGGGAATATCTATTCCAAGTTCGAGAAGACACATGGTGTTTTGGCTGGCAAAATGGTGGATTGCAGACTAAAGGAGGAGCTTCATTAACAATTCTTGGAGACATGGCCCTCTCTAACAAGTTAGTTGTCTACGATATCGAAAACCAAGTCATTGGATGGACCAATCACAACTGCTCAGGAGGAATACAAGTCAAGGATGAAGAAAGTGGAGCAATCTATACTGTTGGTGCTCACAACCTCTCATGGTCGTCTTCTTTAGCTATTACAAAACTTCTTACACTTGTTTCTCTCTTAATTCCTTTCTTCTGTAACGTTGCTTTATAG

Protein Analysis

488

Amino Acids

52.81

Weight (kDa)

5.7

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 10 - 190 9.7e-43 Xylanase inhibitor N-terminal
Asp PF00026 10 - 359 3.2e-33 Eukaryotic aspartyl protease
TAXi_C PF14541 208 - 360 2.4e-23 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 987
AatII GACGTC 1 cut(s) 177
Acc16I TGCGCA 1 cut(s) 750
AccI GTMKAC 1 cut(s) 1272
AciI CCGC 8 cut(s) 13, 50, 68, 83, 201, 222, 662, 1133
AclI AACGTT 1 cut(s) 1455
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 100, 694
AcyI GRCGYC 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 1179
AfaI GTAC 1 cut(s) 955
AfiI CCNNNNNNNGG 1 cut(s) 221
AgeI ACCGGT 1 cut(s) 587
AgsI TTSAA 5 cut(s) 113, 302, 525, 875, 1046
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
AleI CACNNNNGTG 1 cut(s) 852
Alw21I GWGCWC 3 cut(s) 160, 169, 1375
Alw26I GTCTC 3 cut(s) 10, 282, 1236
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 1143
AoxI GGCC 1 cut(s) 1248
ApeKI GCWGC 2 cut(s) 659, 712
ApoI RAATTY 2 cut(s) 100, 694
ArsI GACNNNNNNTTYG 2 cut(s) 1275, 1307
AsiGI ACCGGT 1 cut(s) 587
AspA2I CCTAGG 1 cut(s) 359
AspLEI GCGC 1 cut(s) 751
AspS9I GGNCC 2 cut(s) 1249, 1302
AsuHPI GGTGA 2 cut(s) 343, 553
AsuII TTCGAA 2 cut(s) 118, 905
AsuNHI GCTAGC 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 1143
AvaII GGWCC 1 cut(s) 1302
AvrII CCTAGG 1 cut(s) 359
BanII GRGCYC 2 cut(s) 160, 169
BbsI GAAGAC 2 cut(s) 1176, 1386
Bbv12I GWGCWC 3 cut(s) 160, 169, 1375
BbvI GCAGC 2 cut(s) 646, 724
BccI CCATC 5 cut(s) 212, 289, 509, 662, 1293
BceAI ACGGC 2 cut(s) 96, 105
BciVI GTATCC 1 cut(s) 527
BcoDI GTCTC 3 cut(s) 10, 282, 1236
BfaI CTAG 2 cut(s) 360, 716
BfmI CTRYAG 1 cut(s) 850
BfuI GTATCC 1 cut(s) 527
BglII AGATCT 2 cut(s) 148, 464
BisI GCNGC 5 cut(s) 51, 84, 223, 660, 713
BlnI CCTAGG 1 cut(s) 359
BlsI GCNGC 5 cut(s) 52, 85, 224, 661, 714
Bme18I GGWCC 1 cut(s) 1302
BmeT110I CYCGRG 1 cut(s) 1143
BmgT120I GGNCC 2 cut(s) 1249, 1302
BmiI GGNNCC 2 cut(s) 592, 1091
BmsI GCATC 3 cut(s) 357, 391, 967
BmtI GCTAGC 1 cut(s) 719
BpiI GAAGAC 2 cut(s) 1176, 1386
BplI GAGNNNNNCTC 2 cut(s) 461, 493
Bpu10I CCTNAGC 1 cut(s) 1318
Bpu14I TTCGAA 2 cut(s) 118, 905
BpuEI CTTGAG 1 cut(s) 172
Bsa29I ATCGAT 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 359, 1142
BsaWI WCCGGW 1 cut(s) 587
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 587
Bse1I ACTGG 1 cut(s) 577
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 359, 1142
BseGI GGATG 5 cut(s) 406, 623, 1018, 1304, 1345
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 6 cut(s) 22, 175, 228, 459, 492, 1332
BseNI ACTGG 1 cut(s) 577
BseRI GAGGAG 2 cut(s) 185, 1233
BseXI GCAGC 2 cut(s) 646, 724
BsgI GTGCAG 1 cut(s) 451
BshFI GGCC 1 cut(s) 1250
BshTI ACCGGT 1 cut(s) 587
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 3 cut(s) 160, 169, 1375
BsiHKCI CYCGRG 1 cut(s) 1143
BsiSI CCGG 2 cut(s) 132, 588
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 3 cut(s) 10, 282, 1236
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 1 cut(s) 1250
BsoBI CYCGRG 1 cut(s) 1143
Bsp119I TTCGAA 2 cut(s) 118, 905
Bsp1286I GDGCHC 3 cut(s) 160, 169, 1375
Bsp143I GATC 5 cut(s) 4, 148, 370, 464, 1084
BspACI CCGC 8 cut(s) 13, 50, 68, 83, 201, 222, 662, 1133
BspANI GGCC 1 cut(s) 1250
BspCNI CTCAG 6 cut(s) 21, 174, 229, 460, 491, 1331
BspDI ATCGAT 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 592, 1091
BspOI GCTAGC 1 cut(s) 719
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 2 cut(s) 118, 905
BsrFI RCCGGY 1 cut(s) 587
BsrI ACTGG 1 cut(s) 577
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 2 cut(s) 359, 1142
BssMI GATC 5 cut(s) 4, 148, 370, 464, 1084
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 359
Bst4CI ACNGT 6 cut(s) 21, 182, 633, 1042, 1099, 1366
BstACI GRCGYC 1 cut(s) 174
BstBI TTCGAA 2 cut(s) 118, 905
BstC8I GCNNGC 3 cut(s) 233, 717, 1190
BstDEI CTNAG 6 cut(s) 8, 161, 237, 468, 478, 1318
BstF5I GGATG 5 cut(s) 406, 623, 1018, 1304, 1345
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 5 cut(s) 7, 151, 373, 467, 1087
BstMAI GTCTC 3 cut(s) 10, 282, 1236
BstMBI GATC 5 cut(s) 4, 148, 370, 464, 1084
BstMWI GCNNNNNNNGC 4 cut(s) 89, 164, 228, 1033
BstSFI CTRYAG 1 cut(s) 850
BstV1I GCAGC 2 cut(s) 646, 724
BstV2I GAAGAC 2 cut(s) 1176, 1386
BstX2I RGATCY 3 cut(s) 4, 148, 464
BstXI CCANNNNNNTGG 1 cut(s) 1295
BstYI RGATCY 3 cut(s) 4, 148, 464
Bsu15I ATCGAT 1 cut(s) 207
BsuI GTATCC 1 cut(s) 527
BsuRI GGCC 1 cut(s) 1250
BsuTUI ATCGAT 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 528
BtsCI GGATG 5 cut(s) 406, 623, 1018, 1304, 1345
BtsI GCAGTG 2 cut(s) 411, 439
BtsIMutI CAGTG 3 cut(s) 26, 411, 439
Cac8I GCNNGC 3 cut(s) 233, 717, 1190
CfoI GCGC 1 cut(s) 751
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 2 cut(s) 1249, 1302
ClaI ATCGAT 1 cut(s) 207
Csp6I GTAC 1 cut(s) 954
CspAI ACCGGT 1 cut(s) 587
CspCI CAANNNNNGTGG 2 cut(s) 757, 792
CviAII CATG 4 cut(s) 296, 1176, 1246, 1386
CviQI GTAC 1 cut(s) 954
DdeI CTNAG 6 cut(s) 8, 161, 237, 468, 478, 1318
DpnI GATC 5 cut(s) 6, 150, 372, 466, 1086
DpnII GATC 5 cut(s) 4, 148, 370, 464, 1084
DraIII CACNNNGTG 1 cut(s) 1179
EciI GGCGGA 2 cut(s) 28, 190
Ecl136II GAGCTC 2 cut(s) 158, 167
Eco130I CCWWGG 1 cut(s) 359
Eco24I GRGCYC 2 cut(s) 160, 169
Eco32I GATATC 2 cut(s) 322, 1279
Eco47I GGWCC 1 cut(s) 1302
Eco53kI GAGCTC 2 cut(s) 158, 167
Eco88I CYCGRG 1 cut(s) 1143
EcoICRI GAGCTC 2 cut(s) 158, 167
EcoRV GATATC 2 cut(s) 322, 1279
EcoT14I CCWWGG 1 cut(s) 359
EcoT38I GRGCYC 2 cut(s) 160, 169
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 4 cut(s) 299, 1179, 1249, 1389
FatI CATG 4 cut(s) 295, 1175, 1245, 1385
FauI CCCGC 1 cut(s) 75
FblI GTMKAC 1 cut(s) 1272
Fnu4HI GCNGC 5 cut(s) 51, 84, 223, 660, 713
FokI GGATG 5 cut(s) 413, 630, 1005, 1311, 1352
FriOI GRGCYC 2 cut(s) 160, 169
Fsp4HI GCNGC 5 cut(s) 51, 84, 223, 660, 713
FspBI CTAG 2 cut(s) 360, 716
FspI TGCGCA 1 cut(s) 750
GlaI GCGC 1 cut(s) 750
GluI GCNGC 5 cut(s) 51, 84, 223, 660, 713
HaeIII GGCC 1 cut(s) 1250
HapII CCGG 2 cut(s) 132, 588
HhaI GCGC 1 cut(s) 751
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 4 cut(s) 299, 1179, 1249, 1389
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HincII GTYRAC 2 cut(s) 457, 859
HindII GTYRAC 2 cut(s) 457, 859
HinfI GANTC 6 cut(s) 192, 239, 270, 650, 917, 1049
HpaI GTTAAC 1 cut(s) 457
HpaII CCGG 2 cut(s) 132, 588
HphI GGTGA 2 cut(s) 343, 553
Hpy166II GTNNAC 6 cut(s) 178, 411, 457, 859, 1056, 1273
Hpy188I TCNGA 8 cut(s) 97, 164, 269, 275, 353, 469, 617, 647
Hpy8I GTNNAC 6 cut(s) 178, 411, 457, 859, 1056, 1273
Hpy99I CGWCG 3 cut(s) 82, 91, 176
HpyCH4III ACNGT 6 cut(s) 21, 182, 633, 1042, 1099, 1366
HpyCH4IV ACGT 3 cut(s) 174, 453, 1455
HpyCH4V TGCA 6 cut(s) 348, 416, 432, 869, 1036, 1207
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 164, 228, 1033
HpyF3I CTNAG 6 cut(s) 8, 161, 237, 468, 478, 1318
HpySE526I ACGT 3 cut(s) 174, 453, 1455
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 4 cut(s) 299, 1179, 1249, 1389
HspAI GCGC 1 cut(s) 749
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 5 cut(s) 4, 148, 370, 464, 1084
LmnI GCTCC 3 cut(s) 155, 1220, 1352
Lsp1109I GCAGC 2 cut(s) 646, 724
LweI GCATC 3 cut(s) 357, 391, 967
MaeI CTAG 2 cut(s) 360, 716
MaeII ACGT 3 cut(s) 174, 453, 1455
MaeIII GTNAC 8 cut(s) 182, 434, 473, 568, 651, 993, 1099, 1451
MalI GATC 5 cut(s) 6, 150, 372, 466, 1086
MboI GATC 5 cut(s) 4, 148, 370, 464, 1084
MboII GAAGA 7 cut(s) 604, 894, 962, 1181, 1355, 1386, 1438
MfeI CAATTG 1 cut(s) 870
MflI RGATCY 3 cut(s) 4, 148, 464
MhlI GDGCHC 3 cut(s) 160, 169, 1375
MluCI AATT 9 cut(s) 71, 100, 334, 694, 870, 883, 1079, 1233, 1437
MlyI GAGTC 5 cut(s) 186, 248, 264, 659, 1058
MnlI CCTC 9 cut(s) 206, 225, 767, 872, 1152, 1211, 1262, 1316, 1391
MseI TTAA 3 cut(s) 456, 1229, 1436
MslI CAYNNNNRTG 1 cut(s) 852
MspI CCGG 2 cut(s) 132, 588
MunI CAATTG 1 cut(s) 870
Mva1269I GAATGC 1 cut(s) 913
MwoI GCNNNNNNNGC 4 cut(s) 89, 164, 228, 1033
NdeII GATC 5 cut(s) 4, 148, 370, 464, 1084
NheI GCTAGC 1 cut(s) 715
NlaIII CATG 4 cut(s) 299, 1179, 1249, 1389
NlaIV GGNNCC 2 cut(s) 592, 1091
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 5 cut(s) 182, 434, 473, 651, 1099
NsbI TGCGCA 1 cut(s) 750
NspV TTCGAA 2 cut(s) 118, 905
OliI CACNNNNGTG 1 cut(s) 852
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PctI GAATGC 1 cut(s) 913
PfeI GAWTC 1 cut(s) 917
PinAI ACCGGT 1 cut(s) 587
PkrI GCNGC 5 cut(s) 52, 85, 224, 661, 714
PleI GAGTC 5 cut(s) 186, 247, 264, 658, 1057
PpsI GAGTC 5 cut(s) 186, 247, 264, 658, 1057
PsiI TTATAA 1 cut(s) 987
Psp124BI GAGCTC 2 cut(s) 160, 169
Psp1406I AACGTT 1 cut(s) 1455
PspN4I GGNNCC 2 cut(s) 592, 1091
PspPI GGNCC 2 cut(s) 1249, 1302
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
PsuI RGATCY 3 cut(s) 4, 148, 464
RsaI GTAC 1 cut(s) 955
RsaNI GTAC 1 cut(s) 954
RseI CAYNNNNRTG 1 cut(s) 852
SacI GAGCTC 2 cut(s) 160, 169
SaqAI TTAA 3 cut(s) 456, 1229, 1436
SatI GCNGC 5 cut(s) 51, 84, 223, 660, 713
Sau3AI GATC 5 cut(s) 4, 148, 370, 464, 1084
Sau96I GGNCC 2 cut(s) 1249, 1302
SchI GAGTC 5 cut(s) 186, 248, 264, 659, 1058
SduI GDGCHC 3 cut(s) 160, 169, 1375
SfaNI GCATC 3 cut(s) 357, 391, 967
SfcI CTRYAG 1 cut(s) 850
SfuI TTCGAA 2 cut(s) 118, 905
SinI GGWCC 1 cut(s) 1302
SmiMI CAYNNNNRTG 1 cut(s) 852
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 9 cut(s) 71, 100, 334, 694, 870, 883, 1079, 1233, 1437
SsiI CCGC 8 cut(s) 13, 50, 68, 83, 201, 222, 662, 1133
SspMI CTAG 2 cut(s) 360, 716
SstI GAGCTC 2 cut(s) 160, 169
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 6 cut(s) 21, 182, 633, 1042, 1099, 1366
TaiI ACGT 3 cut(s) 177, 456, 1458
TaqI TCGA 6 cut(s) 77, 118, 207, 905, 1165, 1281
TasI AATT 9 cut(s) 71, 100, 334, 694, 870, 883, 1079, 1233, 1437
TauI GCSGC 3 cut(s) 53, 86, 225
TfiI GAWTC 1 cut(s) 917
Tru1I TTAA 3 cut(s) 456, 1229, 1436
Tru9I TTAA 3 cut(s) 456, 1229, 1436
TscAI CASTG 3 cut(s) 26, 418, 439
TseFI GTSAC 5 cut(s) 182, 434, 473, 651, 1099
TseI GCWGC 2 cut(s) 659, 712
Tsp45I GTSAC 5 cut(s) 182, 434, 473, 651, 1099
TspDTI ATGAA 5 cut(s) 545, 687, 1116, 1215, 1356
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 3 cut(s) 26, 418, 439
VpaK11BI GGWCC 1 cut(s) 1302
XapI RAATTY 2 cut(s) 100, 694
XmaJI CCTAGG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 1272
XspI CTAG 2 cut(s) 360, 716
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.