Rw2G048190

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
75603996 .. 75604968
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G048190.1

Sequence Viewer

Length: 783 bp
ATGGATCCTGGACCAACATCAAGATCGGTTCTTTTCGGATTTCTTCTACTTGTCACTTTGATTCTACATGTTTCCGGCAACTTGGTCTTCCTGGCGAGTCACAAGTTCCAGGGCCGCCGCCGGCAGTGGTCACTTAGTGAGTTAAAAGCCCACGACGCTCGGCGCCACGGCCGGAACCTCCTATCTGTTTCTTCATCAGCTGTGGATCTGGAGTTGGGCGGCAACGGCCACCCTTCCGAGACCGGTCTCTACTGTGCCAAGCTCGGAATCGGATCCCCGTTGAAGGACTACTACGTGCAAGTCGACACCGGCAACGACATTTTGTGGAAAAGCGACATTGGAATCAAGCTCACATTGTATGATCCAAAGGACTCTTCCACTTCCCAATCCATCACTTGTGATCAGGACTTTTGCACTTCGCAATACGATGGTCAGTTGCCGGGTTGTAAACCGGAGTTGCTGTGTCAATATAATGTGGTCTATGGGGATGGGAGCTCGACTGCAGGGTACTTTGTGAAGGATGTGATTGAGTTTGATAAGCTTAGTGCCTTAGTGGGATTTGCGCATTGTTTGGACAATGTGAATGGGGGTGGCATTTTCACAATTGGGAAAGTGGTGGAGACGAAATTGAAGCTGAACATGACTCCATTGGTGGCCAAAAGTGCGCATTACAATGTGGCCATGGAGGCGATTGAGGTGGGTGGTGATGTTGTAGACCTGCCTTCGGATACATTTGACAGTGGAGGCATGGCAGTGGTGGTGGTCATGAGCAGAAGGGCTTGA

Protein Analysis

260

Amino Acids

28.06

Weight (kDa)

5.77

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 179 8.1e-16 Xylanase inhibitor N-terminal
Asp PF00026 84 - 182 2.7e-06 Eukaryotic aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 564, 666
Acc36I ACCTGC 1 cut(s) 726
AccB1I GGYRCC 1 cut(s) 162
AccI GTMKAC 2 cut(s) 303, 714
AciI CCGC 3 cut(s) 115, 118, 219
AclWI GGATC 5 cut(s) 12, 213, 267, 280, 356
AcoI YGGCCR 4 cut(s) 169, 226, 654, 678
AcyI GRCGYC 1 cut(s) 163
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 2 cut(s) 283, 724
AflIII ACRYGT 1 cut(s) 67
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 2 cut(s) 283, 631
AjnI CCWGG 3 cut(s) 7, 90, 108
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AluBI AGCT 6 cut(s) 200, 262, 349, 495, 541, 634
AluI AGCT 6 cut(s) 200, 262, 349, 495, 541, 634
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 3 cut(s) 233, 251, 614
AlwI GGATC 5 cut(s) 12, 213, 267, 280, 356
AoxI GGCC 5 cut(s) 112, 169, 226, 654, 678
AsiGI ACCGGT 1 cut(s) 242
AspLEI GCGC 3 cut(s) 165, 565, 667
AspS9I GGNCC 2 cut(s) 11, 112
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 1 cut(s) 716
AvaII GGWCC 1 cut(s) 11
BalI TGGCCA 2 cut(s) 656, 680
BamHI GGATCC 2 cut(s) 4, 272
BanI GGYRCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 497
BarI GAAGNNNNNNTAC 2 cut(s) 275, 307
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 497
BccI CCATC 3 cut(s) 398, 422, 482
BceAI ACGGC 2 cut(s) 184, 241
BciT130I CCWGG 3 cut(s) 9, 92, 110
BciVI GTATCC 1 cut(s) 721
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 3 cut(s) 233, 251, 614
BfmI CTRYAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 726
BfuI GTATCC 1 cut(s) 721
BglI GCCNNNNNGGC 1 cut(s) 686
BisI GCNGC 3 cut(s) 115, 118, 220
BlsI GCNGC 3 cut(s) 116, 119, 221
Bme1390I CCNGG 4 cut(s) 9, 92, 110, 441
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 11, 112
BmiI GGNNCC 4 cut(s) 6, 164, 176, 274
BmrFI CCNGG 4 cut(s) 9, 92, 110, 441
BpiI GAAGAC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 295
BsaHI GRCGYC 1 cut(s) 163
BsaI GGTCTC 2 cut(s) 233, 251
BsaJI CCNNGG 3 cut(s) 109, 166, 681
BsaWI WCCGGW 2 cut(s) 242, 451
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 724
Bse118I RCCGGY 3 cut(s) 120, 242, 308
BseBI CCWGG 3 cut(s) 9, 92, 110
BseDI CCNNGG 3 cut(s) 109, 166, 681
BseGI GGATG 2 cut(s) 493, 526
BseLI CCNNNNNNNGG 2 cut(s) 283, 724
BseX3I CGGCCG 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 5 cut(s) 114, 171, 228, 656, 680
BshNI GGYRCC 1 cut(s) 162
BshTI ACCGGT 1 cut(s) 242
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 497
BsiSI CCGG 7 cut(s) 75, 121, 172, 243, 309, 440, 452
BslI CCNNNNNNNGG 2 cut(s) 283, 724
BsmAI GTCTC 3 cut(s) 233, 251, 614
BsmBI CGTCTC 1 cut(s) 614
BsnI GGCC 5 cut(s) 114, 171, 228, 656, 680
Bso31I GGTCTC 2 cut(s) 233, 251
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 6 cut(s) 4, 23, 205, 272, 361, 400
Bsp19I CCATGG 1 cut(s) 681
BspACI CCGC 3 cut(s) 115, 118, 219
BspANI GGCC 5 cut(s) 114, 171, 228, 656, 680
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 4 cut(s) 6, 164, 176, 274
BspMAI CTGCAG 1 cut(s) 505
BspMI ACCTGC 1 cut(s) 726
BspPI GGATC 5 cut(s) 12, 213, 267, 280, 356
BspT107I GGYRCC 1 cut(s) 162
BspTNI GGTCTC 2 cut(s) 233, 251
BsrFI RCCGGY 3 cut(s) 120, 242, 308
BssAI RCCGGY 3 cut(s) 120, 242, 308
BssECI CCNNGG 3 cut(s) 109, 166, 681
BssMI GATC 6 cut(s) 4, 23, 205, 272, 361, 400
BssNI GRCGYC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 681
Bst2UI CCWGG 3 cut(s) 9, 92, 110
Bst4CI ACNGT 2 cut(s) 254, 740
Bst6I CTCTTC 1 cut(s) 379
BstACI GRCGYC 1 cut(s) 163
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 134, 542, 550
BstDSI CCRYGG 2 cut(s) 166, 681
BstF5I GGATG 2 cut(s) 493, 526
BstH2I RGCGCY 1 cut(s) 166
BstHHI GCGC 3 cut(s) 165, 565, 667
BstKTI GATC 6 cut(s) 7, 26, 208, 275, 364, 403
BstMAI GTCTC 3 cut(s) 233, 251, 614
BstMBI GATC 6 cut(s) 4, 23, 205, 272, 361, 400
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 4 cut(s) 155, 225, 662, 686
BstNI CCWGG 3 cut(s) 9, 92, 110
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 4 cut(s) 7, 90, 108, 439
BstSFI CTRYAG 1 cut(s) 501
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 3 cut(s) 4, 205, 272
BstYI RGATCY 3 cut(s) 4, 205, 272
BstZI CGGCCG 1 cut(s) 169
BsuI GTATCC 1 cut(s) 721
BsuRI GGCC 5 cut(s) 114, 171, 228, 656, 680
BtgI CCRYGG 2 cut(s) 166, 681
BtsCI GGATG 2 cut(s) 493, 526
BtsI GCAGTG 2 cut(s) 131, 759
BtsIMutI CAGTG 3 cut(s) 131, 745, 759
BveI ACCTGC 1 cut(s) 726
Cac8I GCNNGC 1 cut(s) 122
CciI TCATGA 1 cut(s) 765
CfoI GCGC 3 cut(s) 165, 565, 667
Cfr10I RCCGGY 3 cut(s) 120, 242, 308
Cfr13I GGNCC 2 cut(s) 11, 112
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 508
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 5 cut(s) 68, 640, 682, 748, 766
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 3 cut(s) 134, 542, 550
DinI GGCGCC 1 cut(s) 164
DpnI GATC 6 cut(s) 6, 25, 207, 274, 363, 402
DpnII GATC 6 cut(s) 4, 23, 205, 272, 361, 400
DraIII CACNNNGTG 1 cut(s) 137
EaeI YGGCCR 4 cut(s) 169, 226, 654, 678
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Ecl136II GAGCTC 1 cut(s) 495
EclXI CGGCCG 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 681
Eco24I GRGCYC 1 cut(s) 497
Eco31I GGTCTC 2 cut(s) 233, 251
Eco47I GGWCC 1 cut(s) 11
Eco52I CGGCCG 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 495
EcoICRI GAGCTC 1 cut(s) 495
EcoRII CCWGG 3 cut(s) 7, 90, 108
EcoT14I CCWWGG 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 497
EgeI GGCGCC 1 cut(s) 164
EheI GGCGCC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 681
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 5 cut(s) 71, 643, 685, 751, 769
FaiI YATR 8 cut(s) 69, 360, 471, 483, 641, 683, 749, 767
FatI CATG 5 cut(s) 67, 639, 681, 747, 765
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 2 cut(s) 303, 714
Fnu4HI GCNGC 3 cut(s) 115, 118, 220
FokI GGATG 2 cut(s) 500, 533
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 3 cut(s) 115, 118, 220
FspAI RTGCGCAY 1 cut(s) 666
FspI TGCGCA 2 cut(s) 564, 666
GlaI GCGC 3 cut(s) 164, 564, 666
GluI GCNGC 3 cut(s) 115, 118, 220
GsuI CTGGAG 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 166
HaeIII GGCC 5 cut(s) 114, 171, 228, 656, 680
HapII CCGG 7 cut(s) 75, 121, 172, 243, 309, 440, 452
HgaI GACGC 1 cut(s) 164
HhaI GCGC 3 cut(s) 165, 565, 667
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 5 cut(s) 71, 643, 685, 751, 769
Hin6I GCGC 3 cut(s) 163, 563, 665
HinP1I GCGC 3 cut(s) 163, 563, 665
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 6 cut(s) 61, 97, 267, 342, 371, 643
HpaII CCGG 7 cut(s) 75, 121, 172, 243, 309, 440, 452
HphI GGTGA 1 cut(s) 716
Hpy166II GTNNAC 3 cut(s) 304, 449, 715
Hpy188I TCNGA 5 cut(s) 38, 238, 266, 272, 727
Hpy188III TCNNGA 4 cut(s) 21, 209, 404, 766
Hpy8I GTNNAC 3 cut(s) 304, 449, 715
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 5 cut(s) 243, 277, 511, 732, 768
HpyCH4III ACNGT 2 cut(s) 254, 740
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 3 cut(s) 298, 414, 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 225, 662, 686
HpyF3I CTNAG 3 cut(s) 134, 542, 550
HpySE526I ACGT 1 cut(s) 294
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 5 cut(s) 71, 643, 685, 751, 769
HspAI GCGC 3 cut(s) 163, 563, 665
KasI GGCGCC 1 cut(s) 162
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 6 cut(s) 4, 23, 205, 272, 361, 400
LmnI GCTCC 1 cut(s) 492
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 3 cut(s) 52, 98, 129
MalI GATC 6 cut(s) 6, 25, 207, 274, 363, 402
MboI GATC 6 cut(s) 4, 23, 205, 272, 361, 400
MboII GAAGA 4 cut(s) 35, 79, 183, 366
MfeI CAATTG 1 cut(s) 603
MflI RGATCY 3 cut(s) 4, 205, 272
MhlI GDGCHC 1 cut(s) 497
MlsI TGGCCA 2 cut(s) 656, 680
MluCI AATT 2 cut(s) 603, 626
MluNI TGGCCA 2 cut(s) 656, 680
Mly113I GGCGCC 1 cut(s) 163
MlyI GAGTC 3 cut(s) 106, 365, 637
MnlI CCTC 4 cut(s) 188, 679, 688, 737
Mox20I TGGCCA 2 cut(s) 656, 680
MroNI GCCGGC 1 cut(s) 120
MscI TGGCCA 2 cut(s) 656, 680
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 2 cut(s) 672, 752
Msp20I TGGCCA 2 cut(s) 656, 680
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 7 cut(s) 75, 121, 172, 243, 309, 440, 452
MspR9I CCNGG 4 cut(s) 9, 92, 110, 441
MunI CAATTG 1 cut(s) 603
MvaI CCWGG 3 cut(s) 9, 92, 110
MwoI GCNNNNNNNGC 4 cut(s) 155, 225, 662, 686
NaeI GCCGGC 1 cut(s) 122
NarI GGCGCC 1 cut(s) 163
NciI CCSGG 1 cut(s) 441
NcoI CCATGG 1 cut(s) 681
NdeII GATC 6 cut(s) 4, 23, 205, 272, 361, 400
NgoMIV GCCGGC 1 cut(s) 120
NlaIII CATG 5 cut(s) 71, 643, 685, 751, 769
NlaIV GGNNCC 4 cut(s) 6, 164, 176, 274
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 3 cut(s) 52, 98, 129
NsbI TGCGCA 2 cut(s) 564, 666
NspI RCATGY 1 cut(s) 71
PagI TCATGA 1 cut(s) 765
PciI ACATGT 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdiI GCCGGC 1 cut(s) 122
PfeI GAWTC 3 cut(s) 61, 267, 342
PfoI TCCNGGA 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 3 cut(s) 116, 119, 221
PleI GAGTC 3 cut(s) 105, 365, 637
PluTI GGCGCC 1 cut(s) 166
PpsI GAGTC 3 cut(s) 105, 365, 637
Ppu21I YACGTR 1 cut(s) 295
PscI ACATGT 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 497
Psp6I CCWGG 3 cut(s) 7, 90, 108
PspGI CCWGG 3 cut(s) 7, 90, 108
PspN4I GGNNCC 4 cut(s) 6, 164, 176, 274
PspPI GGNCC 2 cut(s) 11, 112
PstI CTGCAG 1 cut(s) 505
PsuI RGATCY 3 cut(s) 4, 205, 272
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 2 cut(s) 672, 752
SacI GAGCTC 1 cut(s) 497
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 3 cut(s) 115, 118, 220
Sau3AI GATC 6 cut(s) 4, 23, 205, 272, 361, 400
Sau96I GGNCC 2 cut(s) 11, 112
SchI GAGTC 3 cut(s) 106, 365, 637
ScrFI CCNGG 4 cut(s) 9, 92, 110, 441
SduI GDGCHC 1 cut(s) 497
SfcI CTRYAG 1 cut(s) 501
SfoI GGCGCC 1 cut(s) 164
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 2 cut(s) 672, 752
Sse9I AATT 2 cut(s) 603, 626
SsiI CCGC 3 cut(s) 115, 118, 219
SspDI GGCGCC 1 cut(s) 162
SstI GAGCTC 1 cut(s) 497
StyD4I CCNGG 4 cut(s) 7, 90, 108, 439
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 2 cut(s) 254, 740
TaiI ACGT 1 cut(s) 297
TaqI TCGA 2 cut(s) 303, 497
TasI AATT 2 cut(s) 603, 626
TauI GCSGC 3 cut(s) 117, 120, 222
TfiI GAWTC 3 cut(s) 61, 267, 342
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 3 cut(s) 131, 745, 759
TseFI GTSAC 3 cut(s) 52, 98, 129
Tsp45I GTSAC 3 cut(s) 52, 98, 129
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 3 cut(s) 131, 745, 759
VpaK11BI GGWCC 1 cut(s) 11
XceI RCATGY 1 cut(s) 71
XmiI GTMKAC 2 cut(s) 303, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.