Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Reverse (-)

24636394 .. 24641208

Gene Structure 4815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTGAAACCGAGCCTGAGAACTACTGTGATCGCCTCCTTCCCCATTGCAGCAACTGCTACCTCGACCCACACTCAGTCAGCTAAAGGCAATCCGACGACGGCGCCAGGGCTCGCCGCCGGACAGGGATGGAACGCGAGAGAGAGAGAGAGAGTTTATGATCTGGAGTTGGGCAGCAACGGCTACCCTTCAGAGACCGGTCTCTACTTCGCCAAGCTCATAATCGGATCCCCGTCGAAGGACTACTACGTGCAAGTCGACACCGGCAGCGACATTTTGTGGGTCAAATGCATTGAGTGCGCCAATTGCCCCAAGAAAAGCGACATTGGCGTCAAGCTCACATTGTGTGATCCAAAGGACTCCTCCACTTCCCAATCCATCACTTGTGATCAGGACTTTTGCACTTCGCAATACGATCGTCAGTTGCCTGGTTGTAAACCGGAGTTGCTGTGTCAATATAATGTGGTCTATGGGGATGGGAGCTCGACTGCAGGGTACTTTGTGAAGGATGTGATTGAGTTTGATAAGGTTAGTGGGAGTCATCAGACTTTGGTGACGAATGGGAGCAAAGTTTTCAGGTGTGGAGCTAAGCAGTCAGGGCAAATAGGGAAGTCGTCTGAGGCGCTTGATGGGATTCTTGGTTTCGGGCAAGCGAATTCGTCCATGCCTTCGCAGCTGGCTGCAGCTGGGAAGGTGAAGAAGCAGTTTGCGCATAGTTTGGACAATGTGAATGGGGGTGGCATTTTCGCAATTAGGGAAGTTGTGGAAACAAAATTGAAGAGCAGAAGGGCTTGGGATTTAAGACGCAAAACCAACGGAGAAAGAGAGAGAGAGAGACCGTTTTACCCCTCAAAATATGACACGTGTCACACAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

293

Amino Acids

31.73

Weight (kDa)

8.71

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	69 - 247	4e-34	Xylanase inhibitor N-terminal
Asp	PF00026	69 - 223	8.1e-11	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc16I	TGCGCA	1 cut(s)	711
AccB1I	GGYRCC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	1 cut(s)	137
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	3 cut(s)	222, 235, 344
AcsI	RAATTY	1 cut(s)	655
AcuI	CTGAAG	1 cut(s)	174
AcvI	CACGTG	1 cut(s)	864
AcyI	GRCGYC	2 cut(s)	104, 330
AdeI	CACNNNGTG	1 cut(s)	345
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	2 cut(s)	861, 863
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	778
AjnI	CCWGG	2 cut(s)	106, 427
AluBI	AGCT	7 cut(s)	83, 217, 337, 483, 587, 676, 686
AluI	AGCT	7 cut(s)	83, 217, 337, 483, 587, 676, 686
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	3 cut(s)	188, 206, 829
AlwI	GGATC	3 cut(s)	222, 235, 344
AlwNI	CAGNNNCTG	1 cut(s)	56
ApeKI	GCWGC	6 cut(s)	50, 174, 267, 673, 680, 683
ApoI	RAATTY	1 cut(s)	655
AsiGI	ACCGGT	1 cut(s)	197
AspLEI	GCGC	4 cut(s)	106, 302, 625, 712
AsuHPI	GGTGA	3 cut(s)	16, 565, 706
BamHI	GGATCC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	2 cut(s)	114, 485
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BbrPI	CACGTG	1 cut(s)	864
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	6 cut(s)	62, 186, 279, 667, 685, 695
BccI	CCATC	4 cut(s)	123, 386, 470, 623
BceAI	ACGGC	2 cut(s)	117, 196
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	2 cut(s)	108, 429
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	3 cut(s)	188, 206, 829
BfmI	CTRYAG	2 cut(s)	489, 681
BfoI	RGCGCY	2 cut(s)	107, 626
BisI	GCNGC	7 cut(s)	51, 117, 175, 268, 674, 681, 684
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	7 cut(s)	52, 118, 176, 269, 675, 682, 685
Bme1390I	CCNGG	2 cut(s)	108, 429
BmiI	GGNNCC	2 cut(s)	105, 229
BmrFI	CCNGG	2 cut(s)	108, 429
BoxI	GACNNNNGTC	1 cut(s)	864
BpmI	CTGGAG	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	588
BsaAI	YACGTR	2 cut(s)	250, 864
BsaHI	GRCGYC	2 cut(s)	104, 330
BsaI	GGTCTC	3 cut(s)	188, 206, 829
BsaJI	CCNNGG	1 cut(s)	107
BsaWI	WCCGGW	2 cut(s)	197, 439
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	2 cut(s)	197, 263
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	108, 429
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	3 cut(s)	134, 481, 514
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	8, 89, 609
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	6 cut(s)	62, 186, 279, 667, 685, 695
BseYI	CCCAGC	1 cut(s)	686
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	418
BshNI	GGYRCC	1 cut(s)	103
BshTI	ACCGGT	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	485
BsiSI	CCGG	4 cut(s)	120, 198, 264, 440
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	3 cut(s)	188, 206, 829
Bso31I	GGTCTC	3 cut(s)	188, 206, 829
Bsp1286I	GDGCHC	2 cut(s)	114, 485
Bsp143I	GATC	6 cut(s)	30, 160, 227, 349, 388, 415
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	1 cut(s)	117
BspCNI	CTCAG	3 cut(s)	9, 88, 610
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	2 cut(s)	105, 229
BspMAI	CTGCAG	2 cut(s)	493, 685
BspPI	GGATC	3 cut(s)	222, 235, 344
BspQI	GCTCTTC	1 cut(s)	773
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	3 cut(s)	188, 206, 829
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	2 cut(s)	197, 263
BssAI	RCCGGY	2 cut(s)	197, 263
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	6 cut(s)	30, 160, 227, 349, 388, 415
BssNI	GRCGYC	2 cut(s)	104, 330
Bst2UI	CCWGG	2 cut(s)	108, 429
Bst4CI	ACNGT	2 cut(s)	28, 840
Bst6I	CTCTTC	1 cut(s)	773
BstACI	GRCGYC	2 cut(s)	104, 330
BstAPI	GCANNNNNTGC	2 cut(s)	56, 297
BstBAI	YACGTR	2 cut(s)	250, 864
BstC8I	GCNNGC	3 cut(s)	114, 651, 678
BstDEI	CTNAG	4 cut(s)	17, 75, 588, 618
BstF5I	GGATG	3 cut(s)	134, 481, 514
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	2 cut(s)	107, 626
BstHHI	GCGC	4 cut(s)	106, 302, 625, 712
BstKTI	GATC	6 cut(s)	33, 163, 230, 352, 391, 418
BstMAI	GTCTC	3 cut(s)	188, 206, 829
BstMBI	GATC	6 cut(s)	30, 160, 227, 349, 388, 415
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 180, 297, 306, 327, 598, 673, 709
BstNI	CCWGG	2 cut(s)	108, 429
BstPAI	GACNNNNGTC	1 cut(s)	864
BstSCI	CCNGG	2 cut(s)	106, 427
BstSFI	CTRYAG	2 cut(s)	489, 681
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	6 cut(s)	62, 186, 279, 667, 685, 695
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	134, 481, 514
Cac8I	GCNNGC	3 cut(s)	114, 651, 678
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	4 cut(s)	106, 302, 625, 712
Cfr10I	RCCGGY	2 cut(s)	197, 263
CseI	GACGC	2 cut(s)	319, 813
Csp6I	GTAC	1 cut(s)	496
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	1 cut(s)	664
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	4 cut(s)	17, 75, 588, 618
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	6 cut(s)	32, 162, 229, 351, 390, 417
DpnII	GATC	6 cut(s)	30, 160, 227, 349, 388, 415
DraIII	CACNNNGTG	1 cut(s)	345
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	773
EarI	CTCTTC	1 cut(s)	773
Ecl136II	GAGCTC	1 cut(s)	483
Eco24I	GRGCYC	2 cut(s)	114, 485
Eco31I	GGTCTC	3 cut(s)	188, 206, 829
Eco53kI	GAGCTC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	174
Eco72I	CACGTG	1 cut(s)	864
EcoICRI	GAGCTC	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	2 cut(s)	106, 427
EcoT22I	ATGCAT	1 cut(s)	293
EcoT38I	GRGCYC	2 cut(s)	114, 485
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
FaeI	CATG	1 cut(s)	667
FaiI	YATR	7 cut(s)	159, 221, 459, 471, 665, 714, 858
FatI	CATG	1 cut(s)	663
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	7 cut(s)	51, 117, 175, 268, 674, 681, 684
FokI	GGATG	3 cut(s)	141, 488, 521
FriOI	GRGCYC	2 cut(s)	114, 485
Fsp4HI	GCNGC	7 cut(s)	51, 117, 175, 268, 674, 681, 684
FspI	TGCGCA	1 cut(s)	711
GlaI	GCGC	4 cut(s)	105, 301, 624, 711
GluI	GCNGC	7 cut(s)	51, 117, 175, 268, 674, 681, 684
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	1 cut(s)	185
HaeII	RGCGCY	2 cut(s)	107, 626
HapII	CCGG	4 cut(s)	120, 198, 264, 440
HgaI	GACGC	2 cut(s)	319, 813
HhaI	GCGC	4 cut(s)	106, 302, 625, 712
Hin1I	GRCGYC	2 cut(s)	104, 330
Hin1II	CATG	1 cut(s)	667
Hin6I	GCGC	4 cut(s)	104, 300, 623, 710
HinP1I	GCGC	4 cut(s)	104, 300, 623, 710
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	359, 538, 634
HpaII	CCGG	4 cut(s)	120, 198, 264, 440
HphI	GGTGA	3 cut(s)	16, 565, 706
Hpy166II	GTNNAC	2 cut(s)	259, 437
Hpy188I	TCNGA	5 cut(s)	96, 193, 227, 546, 619
Hpy188III	TCNNGA	2 cut(s)	164, 392
Hpy8I	GTNNAC	2 cut(s)	259, 437
Hpy99I	CGWCG	3 cut(s)	100, 103, 238
HpyAV	CCTTC	7 cut(s)	49, 198, 232, 499, 678, 685, 780
HpyCH4III	ACNGT	2 cut(s)	28, 840
HpyCH4IV	ACGT	2 cut(s)	249, 863
HpyCH4V	TGCA	6 cut(s)	50, 253, 291, 402, 491, 683
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 180, 297, 306, 327, 598, 673, 709
HpyF3I	CTNAG	4 cut(s)	17, 75, 588, 618
HpySE526I	ACGT	2 cut(s)	249, 863
Hsp92I	GRCGYC	2 cut(s)	104, 330
Hsp92II	CATG	1 cut(s)	667
HspAI	GCGC	4 cut(s)	104, 300, 623, 710
KasI	GGCGCC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	6 cut(s)	30, 160, 227, 349, 388, 415
LguI	GCTCTTC	1 cut(s)	773
LmnI	GCTCC	3 cut(s)	480, 564, 584
Lsp1109I	GCAGC	6 cut(s)	62, 186, 279, 667, 685, 695
MaeII	ACGT	2 cut(s)	249, 863
MaeIII	GTNAC	2 cut(s)	553, 866
MalI	GATC	6 cut(s)	32, 162, 229, 351, 390, 417
MboI	GATC	6 cut(s)	30, 160, 227, 349, 388, 415
MboII	GAAGA	2 cut(s)	709, 790
MfeI	CAATTG	1 cut(s)	304
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	2 cut(s)	114, 485
MluCI	AATT	4 cut(s)	304, 655, 750, 773
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	353, 547
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	5 cut(s)	46, 73, 373, 613, 859
Mph1103I	ATGCAT	1 cut(s)	293
MseI	TTAA	1 cut(s)	800
MspA1I	CMGCKG	2 cut(s)	676, 686
MspI	CCGG	4 cut(s)	120, 198, 264, 440
MspR9I	CCNGG	2 cut(s)	108, 429
MunI	CAATTG	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	108, 429
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	8 cut(s)	56, 180, 297, 306, 327, 598, 673, 709
NarI	GGCGCC	1 cut(s)	104
NdeII	GATC	6 cut(s)	30, 160, 227, 349, 388, 415
NlaIII	CATG	1 cut(s)	667
NlaIV	GGNNCC	2 cut(s)	105, 229
NmuCI	GTSAC	2 cut(s)	553, 866
NsbI	TGCGCA	1 cut(s)	711
NsiI	ATGCAT	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	773
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	634
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	7 cut(s)	52, 118, 176, 269, 675, 682, 685
Ple19I	CGATCG	1 cut(s)	418
PleI	GAGTC	2 cut(s)	353, 546
PluTI	GGCGCC	1 cut(s)	107
PmaCI	CACGTG	1 cut(s)	864
PmlI	CACGTG	1 cut(s)	864
PpsI	GAGTC	2 cut(s)	353, 546
Ppu21I	YACGTR	2 cut(s)	250, 864
PshAI	GACNNNNGTC	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	106, 427
PspCI	CACGTG	1 cut(s)	864
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	2 cut(s)	106, 427
PspN4I	GGNNCC	2 cut(s)	105, 229
PstI	CTGCAG	2 cut(s)	493, 685
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	227
PvuI	CGATCG	1 cut(s)	418
PvuII	CAGCTG	2 cut(s)	676, 686
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SacI	GAGCTC	1 cut(s)	485
SalI	GTCGAC	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	773
SaqAI	TTAA	1 cut(s)	800
SatI	GCNGC	7 cut(s)	51, 117, 175, 268, 674, 681, 684
Sau3AI	GATC	6 cut(s)	30, 160, 227, 349, 388, 415
SchI	GAGTC	2 cut(s)	353, 547
ScrFI	CCNGG	2 cut(s)	108, 429
SduI	GDGCHC	2 cut(s)	114, 485
SfcI	CTRYAG	2 cut(s)	489, 681
SfoI	GGCGCC	1 cut(s)	105
Sse9I	AATT	4 cut(s)	304, 655, 750, 773
SsiI	CCGC	1 cut(s)	117
SspDI	GGCGCC	1 cut(s)	103
SstI	GAGCTC	1 cut(s)	485
StyD4I	CCNGG	2 cut(s)	106, 427
TaaI	ACNGT	2 cut(s)	28, 840
TaiI	ACGT	2 cut(s)	252, 866
TaqI	TCGA	4 cut(s)	65, 236, 258, 485
TasI	AATT	4 cut(s)	304, 655, 750, 773
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	1 cut(s)	800
Tru9I	TTAA	1 cut(s)	800
TseFI	GTSAC	2 cut(s)	553, 866
TseI	GCWGC	6 cut(s)	50, 174, 267, 673, 680, 683
Tsp45I	GTSAC	2 cut(s)	553, 866
TspGWI	ACGGA	1 cut(s)	831
XapI	RAATTY	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	258
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.