Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Reverse (-)

80855702 .. 80856046

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG592000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGATTCTGGACCAACATCAAGATCAGTTCTTTTCGGATTTCTTCTACTTGTCTCTTTGATTATACATGTTTCCGGCAACTTGGTCTTCCTGGTAAGTCACAAGTTCCAGGGCCGCCGTCGGCAGTGGTCACTTAGTGAGTTAAAAGCCCACGACGCTCGGCGGAACGGCCGGAACCTCCTATCTGTTTCTTCATCAGCTGTGGATCTGGAGTTGGGCGGCAACGGCCACCCTTCCGAGACCGGTCTCTACTTCGCCAAGCTCGGAATCGGATCCCCGTCGAAGGAATACTACGTGCAAGTCGACACCGGCAACGACATTTTGTGGGTCAATTTCATTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

114

Amino Acids

12.58

Weight (kDa)

8.14

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	3 cut(s)	115, 163, 219
AclWI	GGATC	3 cut(s)	213, 267, 280
AcoI	YGGCCR	2 cut(s)	169, 226
AdeI	CACNNNGTG	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	67
AgeI	ACCGGT	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	90, 108
AluBI	AGCT	2 cut(s)	200, 262
AluI	AGCT	2 cut(s)	200, 262
Alw26I	GTCTC	3 cut(s)	58, 233, 251
AlwI	GGATC	3 cut(s)	213, 267, 280
AoxI	GGCC	3 cut(s)	112, 169, 226
AsiGI	ACCGGT	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	11, 112
AvaII	GGWCC	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	272
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbsI	GAAGAC	1 cut(s)	79
BceAI	ACGGC	3 cut(s)	102, 184, 241
BciT130I	CCWGG	2 cut(s)	92, 110
BcoDI	GTCTC	3 cut(s)	58, 233, 251
BisI	GCNGC	2 cut(s)	115, 220
BlsI	GCNGC	2 cut(s)	116, 221
Bme1390I	CCNGG	2 cut(s)	92, 110
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	11, 112
BmiI	GGNNCC	2 cut(s)	176, 274
BmrFI	CCNGG	2 cut(s)	92, 110
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	230
BsaAI	YACGTR	1 cut(s)	295
BsaI	GGTCTC	2 cut(s)	233, 251
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	2 cut(s)	242, 308
BseBI	CCWGG	2 cut(s)	92, 110
BseDI	CCNNGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseX3I	CGGCCG	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	3 cut(s)	114, 171, 228
BshTI	ACCGGT	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	172
BsiSI	CCGG	4 cut(s)	75, 172, 243, 309
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	3 cut(s)	58, 233, 251
BsnI	GGCC	3 cut(s)	114, 171, 228
Bso31I	GGTCTC	2 cut(s)	233, 251
Bsp143I	GATC	3 cut(s)	23, 205, 272
BspACI	CCGC	3 cut(s)	115, 163, 219
BspANI	GGCC	3 cut(s)	114, 171, 228
BspLI	GGNNCC	2 cut(s)	176, 274
BspPI	GGATC	3 cut(s)	213, 267, 280
BspTNI	GGTCTC	2 cut(s)	233, 251
BsrFI	RCCGGY	2 cut(s)	242, 308
BssAI	RCCGGY	2 cut(s)	242, 308
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	23, 205, 272
Bst2UI	CCWGG	2 cut(s)	92, 110
BstBAI	YACGTR	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	134
BstKTI	GATC	3 cut(s)	26, 208, 275
BstMAI	GTCTC	3 cut(s)	58, 233, 251
BstMBI	GATC	3 cut(s)	23, 205, 272
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 225
BstNI	CCWGG	2 cut(s)	92, 110
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	90, 108
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	2 cut(s)	205, 272
BstYI	RGATCY	2 cut(s)	205, 272
BstZI	CGGCCG	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	114, 171, 228
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cfr10I	RCCGGY	2 cut(s)	242, 308
Cfr13I	GGNCC	2 cut(s)	11, 112
CseI	GACGC	1 cut(s)	164
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	6 cut(s)	114, 149, 171, 200, 228, 262
CviKI_1	RGCY	6 cut(s)	114, 149, 171, 200, 228, 262
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	3 cut(s)	25, 207, 274
DpnII	GATC	3 cut(s)	23, 205, 272
DraIII	CACNNNGTG	1 cut(s)	137
EaeI	YGGCCR	2 cut(s)	169, 226
EagI	CGGCCG	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	169
Eco31I	GGTCTC	2 cut(s)	233, 251
Eco47I	GGWCC	1 cut(s)	11
Eco52I	CGGCCG	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	90, 108
FaeI	CATG	1 cut(s)	71
FaiI	YATR	2 cut(s)	65, 69
FatI	CATG	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	115, 220
Fsp4HI	GCNGC	2 cut(s)	115, 220
GluI	GCNGC	2 cut(s)	115, 220
GsuI	CTGGAG	1 cut(s)	230
HaeIII	GGCC	3 cut(s)	114, 171, 228
HapII	CCGG	4 cut(s)	75, 172, 243, 309
HgaI	GACGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	5, 267
HpaII	CCGG	4 cut(s)	75, 172, 243, 309
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	4 cut(s)	38, 238, 266, 272
Hpy188III	TCNNGA	3 cut(s)	9, 21, 209
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	3 cut(s)	123, 158, 283
HpyAV	CCTTC	2 cut(s)	243, 277
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 225
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	3 cut(s)	23, 205, 272
LpnPI	CCDG	9 cut(s)	77, 88, 95, 104, 122, 185, 194, 256, 322
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	98, 129
MalI	GATC	3 cut(s)	25, 207, 274
MboI	GATC	3 cut(s)	23, 205, 272
MboII	GAAGA	3 cut(s)	35, 79, 183
MflI	RGATCY	2 cut(s)	205, 272
MluCI	AATT	1 cut(s)	331
MnlI	CCTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	4 cut(s)	75, 172, 243, 309
MspR9I	CCNGG	2 cut(s)	92, 110
MvaI	CCWGG	2 cut(s)	92, 110
MwoI	GCNNNNNNNGC	2 cut(s)	155, 225
NdeII	GATC	3 cut(s)	23, 205, 272
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	2 cut(s)	176, 274
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	98, 129
NspI	RCATGY	1 cut(s)	71
PciI	ACATGT	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	5, 267
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	116, 221
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	90, 108
PspGI	CCWGG	2 cut(s)	90, 108
PspN4I	GGNNCC	2 cut(s)	176, 274
PspPI	GGNCC	2 cut(s)	11, 112
PsuI	RGATCY	2 cut(s)	205, 272
PvuII	CAGCTG	1 cut(s)	200
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	115, 220
Sau3AI	GATC	3 cut(s)	23, 205, 272
Sau96I	GGNCC	2 cut(s)	11, 112
ScrFI	CCNGG	2 cut(s)	92, 110
SetI	ASST	4 cut(s)	180, 202, 264, 297
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	3 cut(s)	115, 163, 219
StyD4I	CCNGG	2 cut(s)	90, 108
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	281, 303
TasI	AATT	1 cut(s)	331
TauI	GCSGC	2 cut(s)	117, 222
TfiI	GAWTC	2 cut(s)	5, 267
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	98, 129
Tsp45I	GTSAC	2 cut(s)	98, 129
TspDTI	ATGAA	2 cut(s)	183, 325
TspRI	CASTG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	11
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.