Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Reverse (-)

14939125 .. 14943956

Gene Structure 4832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027765

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGGGATGAGGTGGAGGTGGCAGCTGGGAGACTTCATCCAGGCACTATTGGGGTTTTGTATATGGATCCTGGACAAACATCAAGATCGGTTCTTTTCGGATTTCTTCTACTTCTCTCTTTGATTCTACATGTTTCCTACAACTTGGTCTTCCCGGTGAGTCACAAGTTCCAGGGCCACCGCGGGCAGTGGTCACTTAATGAGTTAAAAGCCCACGACGCTCGGCGCCACGGCCGGAACCTTCTCTCTCTTTCTTCATCAGCTGTGGATCTGGAGTTGGGCGCCAACGGCCACCCTTTCGAGACCGGTCTCTACTTTGCCAAGCTTGGAATCGGATCCCCGTCGAAGGACTATTACATGCAAGTCGACACCGGTAGCGACATTTTGTGGGTCAATTGCATTGAGTGCGCCAATTGGCCCAAGAAAAGCGACATTGGAGTCAAGCTCACATTGTATGATCCAAAGGACTCCTCCACTTCCCAATCCATCACTTGTGATCAGGACTTTTGCACTTCGCAATACGATGGTCAGTTGCCGGGTTGTAAATCGGAGTTGCTGTGTCAATATAATGTGGTCTATGGGGATGGGAGCTCGACTACAGGGTACTTTGCGAAGGATGTGATTGAGTTTAATAAGGTGAGTGGGAGTCATCAGACTTCAGTGACGAATGGGAGCAAAGTTTTTGGGTGTGGAGCTAAGCAGTCAGGGCAGCTAGGGAACTGGGAAGGTGAAGAAGCAGTTTGTGCATTGTTTGGACAATGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

256

Amino Acids

27.71

Weight (kDa)

5.45

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	105 - 239	3.2e-26	Xylanase inhibitor N-terminal
Asp	PF00026	105 - 162	1.4e-08	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AccB1I	GGYRCC	2 cut(s)	225, 281
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	1 cut(s)	183
AciI	CCGC	2 cut(s)	181, 183
AclWI	GGATC	6 cut(s)	62, 75, 276, 330, 343, 452
AcoI	YGGCCR	2 cut(s)	232, 289
AcuI	CTGAAG	1 cut(s)	642
AcyI	GRCGYC	2 cut(s)	226, 282
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	1 cut(s)	346
AflIII	ACRYGT	1 cut(s)	130
AgeI	ACCGGT	2 cut(s)	305, 371
AjnI	CCWGG	3 cut(s)	40, 70, 171
AluBI	AGCT	7 cut(s)	26, 263, 325, 445, 591, 695, 712
AluI	AGCT	7 cut(s)	26, 263, 325, 445, 591, 695, 712
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	3 cut(s)	25, 296, 314
AlwI	GGATC	6 cut(s)	62, 75, 276, 330, 343, 452
AoxI	GGCC	4 cut(s)	175, 232, 289, 416
ApeKI	GCWGC	2 cut(s)	23, 709
AsiGI	ACCGGT	2 cut(s)	305, 371
AspLEI	GCGC	3 cut(s)	228, 284, 410
AspS9I	GGNCC	2 cut(s)	175, 417
AsuC2I	CCSGG	2 cut(s)	155, 537
AsuHPI	GGTGA	3 cut(s)	169, 649, 740
BamHI	GGATCC	2 cut(s)	67, 335
BanI	GGYRCC	2 cut(s)	225, 281
BanII	GRGCYC	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	2 cut(s)	35, 721
BccI	CCATC	3 cut(s)	494, 518, 578
BceAI	ACGGC	2 cut(s)	247, 304
BciT130I	CCWGG	3 cut(s)	42, 72, 173
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	2 cut(s)	155, 537
BcoDI	GTCTC	3 cut(s)	25, 296, 314
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	2 cut(s)	229, 285
BisI	GCNGC	2 cut(s)	24, 710
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	2 cut(s)	25, 711
Bme1390I	CCNGG	5 cut(s)	42, 72, 155, 173, 537
BmgT120I	GGNCC	2 cut(s)	175, 417
BmiI	GGNNCC	5 cut(s)	69, 227, 239, 283, 337
BmrFI	CCNGG	5 cut(s)	42, 72, 155, 173, 537
BmrI	ACTGGG	1 cut(s)	730
BmuI	ACTGGG	1 cut(s)	730
BpiI	GAAGAC	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	429, 461
BpmI	CTGGAG	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuMI	CCSGG	2 cut(s)	155, 537
BsaHI	GRCGYC	2 cut(s)	226, 282
BsaI	GGTCTC	2 cut(s)	296, 314
BsaJI	CCNNGG	3 cut(s)	172, 181, 229
BsaWI	WCCGGW	2 cut(s)	305, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse118I	RCCGGY	2 cut(s)	305, 371
Bse1I	ACTGG	1 cut(s)	725
BseBI	CCWGG	3 cut(s)	42, 72, 173
BseDI	CCNNGG	3 cut(s)	172, 181, 229
BseGI	GGATG	4 cut(s)	13, 37, 589, 622
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	725
BseRI	GAGGAG	1 cut(s)	460
BseX3I	CGGCCG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	35, 721
BseYI	CCCAGC	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	183
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	4 cut(s)	177, 234, 291, 418
BshNI	GGYRCC	2 cut(s)	225, 281
BshTI	ACCGGT	2 cut(s)	305, 371
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	593
BsiSI	CCGG	5 cut(s)	155, 235, 306, 372, 536
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	3 cut(s)	25, 296, 314
BsnI	GGCC	4 cut(s)	177, 234, 291, 418
Bso31I	GGTCTC	2 cut(s)	296, 314
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	6 cut(s)	67, 86, 268, 335, 457, 496
Bsp1720I	GCTNAGC	1 cut(s)	696
BspACI	CCGC	2 cut(s)	181, 183
BspANI	GGCC	4 cut(s)	177, 234, 291, 418
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	5 cut(s)	69, 227, 239, 283, 337
BspPI	GGATC	6 cut(s)	62, 75, 276, 330, 343, 452
BspT107I	GGYRCC	2 cut(s)	225, 281
BspTNI	GGTCTC	2 cut(s)	296, 314
BsrFI	RCCGGY	2 cut(s)	305, 371
BsrI	ACTGG	1 cut(s)	725
BssAI	RCCGGY	2 cut(s)	305, 371
BssECI	CCNNGG	3 cut(s)	172, 181, 229
BssMI	GATC	6 cut(s)	67, 86, 268, 335, 457, 496
BssNI	GRCGYC	2 cut(s)	226, 282
Bst2UI	CCWGG	3 cut(s)	42, 72, 173
BstACI	GRCGYC	2 cut(s)	226, 282
BstAPI	GCANNNNNTGC	2 cut(s)	405, 743
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	696
BstDSI	CCRYGG	2 cut(s)	181, 229
BstF5I	GGATG	4 cut(s)	13, 37, 589, 622
BstFNI	CGCG	1 cut(s)	183
BstH2I	RGCGCY	2 cut(s)	229, 285
BstHHI	GCGC	3 cut(s)	228, 284, 410
BstKTI	GATC	6 cut(s)	70, 89, 271, 338, 460, 499
BstMAI	GTCTC	3 cut(s)	25, 296, 314
BstMBI	GATC	6 cut(s)	67, 86, 268, 335, 457, 496
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 288, 405, 706, 743
BstNI	CCWGG	3 cut(s)	42, 72, 173
BstNSI	RCATGY	2 cut(s)	134, 361
BstSCI	CCNGG	5 cut(s)	40, 70, 153, 171, 535
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	35, 721
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	3 cut(s)	67, 268, 335
BstYI	RGATCY	3 cut(s)	67, 268, 335
BstZI	CGGCCG	1 cut(s)	232
BsuRI	GGCC	4 cut(s)	177, 234, 291, 418
BtgI	CCRYGG	2 cut(s)	181, 229
BtsCI	GGATG	4 cut(s)	13, 37, 589, 622
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	194, 666
Cac8I	GCNNGC	1 cut(s)	185
CfoI	GCGC	3 cut(s)	228, 284, 410
Cfr10I	RCCGGY	2 cut(s)	305, 371
Cfr13I	GGNCC	2 cut(s)	175, 417
Cfr42I	CCGCGG	1 cut(s)	184
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	604
CspAI	ACCGGT	2 cut(s)	305, 371
CviAII	CATG	2 cut(s)	131, 358
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	1 cut(s)	696
DinI	GGCGCC	2 cut(s)	227, 283
DpnI	GATC	6 cut(s)	69, 88, 270, 337, 459, 498
DpnII	GATC	6 cut(s)	67, 86, 268, 335, 457, 496
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	2 cut(s)	232, 289
EagI	CGGCCG	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	591
EclXI	CGGCCG	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	593
Eco31I	GGTCTC	2 cut(s)	296, 314
Eco52I	CGGCCG	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	591
Eco57I	CTGAAG	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	591
EcoRII	CCWGG	3 cut(s)	40, 70, 171
EcoT38I	GRGCYC	1 cut(s)	593
EgeI	GGCGCC	2 cut(s)	227, 283
EheI	GGCGCC	2 cut(s)	227, 283
FaeI	CATG	2 cut(s)	134, 361
FaiI	YATR	7 cut(s)	63, 65, 132, 359, 456, 567, 579
FatI	CATG	2 cut(s)	130, 357
FauI	CCCGC	1 cut(s)	176
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	24, 710
FokI	GGATG	4 cut(s)	20, 24, 596, 629
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	2 cut(s)	24, 710
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	3 cut(s)	227, 283, 409
GluI	GCNGC	2 cut(s)	24, 710
GsaI	CCCAGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	2 cut(s)	229, 285
HaeIII	GGCC	4 cut(s)	177, 234, 291, 418
HapII	CCGG	5 cut(s)	155, 235, 306, 372, 536
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	3 cut(s)	228, 284, 410
Hin1I	GRCGYC	2 cut(s)	226, 282
Hin1II	CATG	2 cut(s)	134, 361
Hin6I	GCGC	3 cut(s)	226, 282, 408
HinP1I	GCGC	3 cut(s)	226, 282, 408
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	6 cut(s)	124, 160, 330, 438, 467, 646
HpaII	CCGG	5 cut(s)	155, 235, 306, 372, 536
HphI	GGTGA	3 cut(s)	169, 649, 740
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	4 cut(s)	101, 335, 550, 654
Hpy188III	TCNNGA	4 cut(s)	84, 272, 301, 500
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	2 cut(s)	221, 346
HpyAV	CCTTC	4 cut(s)	251, 340, 607, 719
HpyCH4V	TGCA	4 cut(s)	361, 399, 510, 746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 288, 405, 706, 743
HpyF3I	CTNAG	1 cut(s)	696
Hsp92I	GRCGYC	2 cut(s)	226, 282
Hsp92II	CATG	2 cut(s)	134, 361
HspAI	GCGC	3 cut(s)	226, 282, 408
KasI	GGCGCC	2 cut(s)	225, 281
Ksp22I	TGATCA	1 cut(s)	496
KspI	CCGCGG	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	67, 86, 268, 335, 457, 496
LmnI	GCTCC	3 cut(s)	588, 672, 692
Lsp1109I	GCAGC	2 cut(s)	35, 721
MaeI	CTAG	1 cut(s)	713
MaeIII	GTNAC	3 cut(s)	161, 192, 661
MalI	GATC	6 cut(s)	69, 88, 270, 337, 459, 498
MboI	GATC	6 cut(s)	67, 86, 268, 335, 457, 496
MboII	GAAGA	4 cut(s)	98, 142, 246, 743
MfeI	CAATTG	2 cut(s)	394, 412
MflI	RGATCY	3 cut(s)	67, 268, 335
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	2 cut(s)	394, 412
Mly113I	GGCGCC	2 cut(s)	226, 282
MlyI	GAGTC	4 cut(s)	169, 447, 461, 655
MnlI	CCTC	3 cut(s)	4, 10, 481
MseI	TTAA	3 cut(s)	198, 206, 630
MspA1I	CMGCKG	3 cut(s)	26, 183, 263
MspI	CCGG	5 cut(s)	155, 235, 306, 372, 536
MspR9I	CCNGG	5 cut(s)	42, 72, 155, 173, 537
MunI	CAATTG	2 cut(s)	394, 412
MvaI	CCWGG	3 cut(s)	42, 72, 173
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	5 cut(s)	218, 288, 405, 706, 743
NarI	GGCGCC	2 cut(s)	226, 282
NciI	CCSGG	2 cut(s)	155, 537
NdeII	GATC	6 cut(s)	67, 86, 268, 335, 457, 496
NlaIII	CATG	2 cut(s)	134, 361
NlaIV	GGNNCC	5 cut(s)	69, 227, 239, 283, 337
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	3 cut(s)	161, 192, 661
NspI	RCATGY	2 cut(s)	134, 361
PciI	ACATGT	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	124, 330
PfoI	TCCNGGA	1 cut(s)	70
PinAI	ACCGGT	2 cut(s)	305, 371
PkrI	GCNGC	2 cut(s)	25, 711
PleI	GAGTC	4 cut(s)	168, 446, 461, 654
PluTI	GGCGCC	2 cut(s)	229, 285
PpsI	GAGTC	4 cut(s)	168, 446, 461, 654
PscI	ACATGT	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	593
Psp6I	CCWGG	3 cut(s)	40, 70, 171
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	3 cut(s)	40, 70, 171
PspN4I	GGNNCC	5 cut(s)	69, 227, 239, 283, 337
PspPI	GGNCC	2 cut(s)	175, 417
PsuI	RGATCY	3 cut(s)	67, 268, 335
PvuII	CAGCTG	2 cut(s)	26, 263
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
SacI	GAGCTC	1 cut(s)	593
SacII	CCGCGG	1 cut(s)	184
SalI	GTCGAC	1 cut(s)	365
SaqAI	TTAA	3 cut(s)	198, 206, 630
SatI	GCNGC	2 cut(s)	24, 710
Sau3AI	GATC	6 cut(s)	67, 86, 268, 335, 457, 496
Sau96I	GGNCC	2 cut(s)	175, 417
SchI	GAGTC	4 cut(s)	169, 447, 461, 655
ScrFI	CCNGG	5 cut(s)	42, 72, 155, 173, 537
SduI	GDGCHC	1 cut(s)	593
SfcI	CTRYAG	1 cut(s)	597
SfoI	GGCGCC	2 cut(s)	227, 283
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
Sse9I	AATT	2 cut(s)	394, 412
SsiI	CCGC	2 cut(s)	181, 183
SspDI	GGCGCC	2 cut(s)	225, 281
SspMI	CTAG	1 cut(s)	713
SstI	GAGCTC	1 cut(s)	593
StyD4I	CCNGG	5 cut(s)	40, 70, 153, 171, 535
TaqI	TCGA	4 cut(s)	300, 344, 366, 593
TasI	AATT	2 cut(s)	394, 412
TfiI	GAWTC	2 cut(s)	124, 330
Tru1I	TTAA	3 cut(s)	198, 206, 630
Tru9I	TTAA	3 cut(s)	198, 206, 630
TscAI	CASTG	2 cut(s)	194, 666
TseFI	GTSAC	3 cut(s)	161, 192, 661
TseI	GCWGC	2 cut(s)	23, 709
Tsp45I	GTSAC	3 cut(s)	161, 192, 661
TspDTI	ATGAA	2 cut(s)	26, 246
TspRI	CASTG	2 cut(s)	194, 666
XceI	RCATGY	2 cut(s)	134, 361
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.