Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Forward (+)

27462593 .. 27464603

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G014720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGATCCTGGACCAACATCAAGATCTGTTCTTTTCGGATCTCTTCTACTTGTCTCTTTGATTCTACATGTTTCTGGCAACTCAGTCTTCCCGGTGAGTCACTATGAGTTAAAAGCCCACAACGCTCGGCGCCACGGTCGGAACCTTCTCTCTGTTTCTTCATCAACTGGTCTCTACTTCACCAAGCTCGGAATCGGATCCCCTTTGAAGGACTACTACATGCAAGTCGACACTGGCAGTGACATTTTGTGGGTCAATTGCATTGAGTGCGCCAATTGCCCAAGAAAATTAATACACACTCTCACCAAATCAAATTATAAAGCTAAAATGAGTATAATTCTCCTCACAAAACAATTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

120

Amino Acids

13.29

Weight (kDa)

9.58

Isoelectric Point (pI)

54.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	59 - 107	1.1e-10	Xylanase inhibitor N-terminal
Asp	PF00026	59 - 103	4e-06	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	228
AclWI	GGATC	4 cut(s)	12, 46, 192, 205
AcyI	GRCGYC	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	2 cut(s)	187, 323
AluI	AGCT	2 cut(s)	187, 323
Alw26I	GTCTC	2 cut(s)	58, 176
AlwI	GGATC	4 cut(s)	12, 46, 192, 205
AseI	ATTAAT	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	132, 272
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	3 cut(s)	106, 172, 295
AvaII	GGWCC	1 cut(s)	11
BamHI	GGATCC	2 cut(s)	4, 197
BanI	GGYRCC	1 cut(s)	129
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BbsI	GAAGAC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	58, 176
BfoI	RGCGCY	1 cut(s)	133
BglII	AGATCT	1 cut(s)	23
Bme1390I	CCNGG	2 cut(s)	9, 92
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	4 cut(s)	6, 131, 143, 199
BmrFI	CCNGG	2 cut(s)	9, 92
BpiI	GAAGAC	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	2 cut(s)	172, 238
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	172, 238
BseRI	GAGGAG	1 cut(s)	332
Bsh1285I	CGRYCG	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	58, 176
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	4 cut(s)	4, 23, 38, 197
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	4 cut(s)	6, 131, 143, 199
BspPI	GGATC	4 cut(s)	12, 46, 192, 205
BspT107I	GGYRCC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	172, 238
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	4 cut(s)	4, 23, 38, 197
BssNI	GRCGYC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	130
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	133
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	2 cut(s)	132, 272
BstKTI	GATC	4 cut(s)	7, 26, 41, 200
BstMAI	GTCTC	2 cut(s)	58, 176
BstMBI	GATC	4 cut(s)	4, 23, 38, 197
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 267, 276
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	2 cut(s)	71, 223
BstSCI	CCNGG	2 cut(s)	7, 90
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	4 cut(s)	4, 23, 38, 197
BstYI	RGATCY	4 cut(s)	4, 23, 38, 197
BtgI	CCRYGG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	231, 244
CfoI	GCGC	2 cut(s)	132, 272
Cfr13I	GGNCC	1 cut(s)	11
CviAII	CATG	2 cut(s)	68, 220
CviJI	RGCY	3 cut(s)	116, 187, 323
CviKI_1	RGCY	3 cut(s)	116, 187, 323
DdeI	CTNAG	1 cut(s)	82
DinI	GGCGCC	1 cut(s)	131
DpnI	GATC	4 cut(s)	6, 25, 40, 199
DpnII	GATC	4 cut(s)	4, 23, 38, 197
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	7
EgeI	GGCGCC	1 cut(s)	131
EheI	GGCGCC	1 cut(s)	131
FaeI	CATG	2 cut(s)	71, 223
FaiI	YATR	5 cut(s)	69, 105, 221, 318, 335
FatI	CATG	2 cut(s)	67, 219
FblI	GTMKAC	1 cut(s)	228
GlaI	GCGC	2 cut(s)	131, 271
HaeII	RGCGCY	1 cut(s)	133
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	2 cut(s)	132, 272
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	71, 223
Hin6I	GCGC	2 cut(s)	130, 270
HinP1I	GCGC	2 cut(s)	130, 270
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	61, 97, 192
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	3 cut(s)	106, 172, 295
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	4 cut(s)	38, 141, 191, 197
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	155, 202
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	223, 261
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 267, 276
HpyF3I	CTNAG	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	2 cut(s)	71, 223
HspAI	GCGC	2 cut(s)	130, 270
KasI	GGCGCC	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	4, 23, 38, 197
LpnPI	CCDG	5 cut(s)	21, 60, 105, 153, 219
MaeIII	GTNAC	2 cut(s)	98, 239
MalI	GATC	4 cut(s)	6, 25, 40, 199
MboI	GATC	4 cut(s)	4, 23, 38, 197
MboII	GAAGA	3 cut(s)	35, 79, 150
MfeI	CAATTG	3 cut(s)	256, 274, 353
MflI	RGATCY	4 cut(s)	4, 23, 38, 197
MluCI	AATT	6 cut(s)	256, 274, 287, 313, 336, 353
Mly113I	GGCGCC	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	1 cut(s)	353
MseI	TTAA	2 cut(s)	110, 290
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	9, 92
MunI	CAATTG	3 cut(s)	256, 274, 353
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	122, 267, 276
NarI	GGCGCC	1 cut(s)	130
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	4 cut(s)	4, 23, 38, 197
NlaIII	CATG	2 cut(s)	71, 223
NlaIV	GGNNCC	4 cut(s)	6, 131, 143, 199
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	98, 239
NspI	RCATGY	2 cut(s)	71, 223
PciI	ACATGT	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	61, 192
PfoI	TCCNGGA	1 cut(s)	7
PleI	GAGTC	1 cut(s)	105
PluTI	GGCGCC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	105
PscI	ACATGT	1 cut(s)	67
PshBI	ATTAAT	1 cut(s)	290
PsiI	TTATAA	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	4 cut(s)	6, 131, 143, 199
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	4 cut(s)	4, 23, 38, 197
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	110, 290
Sau3AI	GATC	4 cut(s)	4, 23, 38, 197
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	9, 92
SetI	ASST	3 cut(s)	147, 189, 325
SfoI	GGCGCC	1 cut(s)	131
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	6 cut(s)	256, 274, 287, 313, 336, 353
SspDI	GGCGCC	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	7, 90
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	228
TasI	AATT	6 cut(s)	256, 274, 287, 313, 336, 353
TfiI	GAWTC	2 cut(s)	61, 192
Tru1I	TTAA	2 cut(s)	110, 290
Tru9I	TTAA	2 cut(s)	110, 290
TscAI	CASTG	2 cut(s)	238, 244
TseFI	GTSAC	2 cut(s)	98, 239
Tsp45I	GTSAC	2 cut(s)	98, 239
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	238, 244
VpaK11BI	GGWCC	1 cut(s)	11
VspI	ATTAAT	1 cut(s)	290
XceI	RCATGY	2 cut(s)	71, 223
XmiI	GTMKAC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.