Rroxscaffold_3G00230620

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
15518971 .. 15519868
898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230620.1

Sequence Viewer

Length: 786 bp
ATGGATCCTGGACCAACATCAAGATCGGTTCTTTTCGAATTTCTTCTACTTGTCTCTTTGATTCTACATGTTTCCGGCAACTTGGTCTTCCCGGTGAGTCACAAGTTCCGGGGCCGTCACGAGCGGTGGTCACTTAGTGAGTTAAAAGCCCACGACGCTCGGCGCCACGACCGGAACCTCCTCTCGTTTCTTCATCAGCGTGGATCCGGAGTTGGGCGGCAACGACCACCTTTCGAGAGACCGGTCTCTACTTCGCCAAGCTCGGAATCGGATCCCCGTCGAAGGACTACTACGTGCAAGTCGACACCGGCGGCAACATTTTGTGGGTCAATTGCATTGAGTGCGCCAATTGCCCCAAGAAAAGCGACATTGGAGTCACGCTCACATTGTATGATCCAAAGGACTCTTCCACTTCCCAATCCATCACTTGTGATCGGGACTTTTGCACTTCGCAATACGATGGTCGATTCTTGGGTTGTGCGGAGTTCTTTGTGTCAATATTATGTGGTCTATGGGGATGGGAGCTCGGCTGCAGGGAAGTCGTACGAGGCGCTTGATGGGATTCTTGGTTTCGGGCAAGCGAATTCGTCCATGATTTCACAGCTAGCTGCAGGTGGGAAGGTGAAGAAGCGGTTTGCGCATTGTTTGGACAATGTGAATGGGGGTGGCATTTTCGCAATTGGGGAAGTTGTGGAGACGAAATTGAAGAGCATAAGGGCTTGGGATTTAAGACGCAAAACCAACGAAGAGAGAGACAGAGAGACCGTTTTACCCCTCAAAATATGA

Protein Analysis

261

Amino Acids

28.8

Weight (kDa)

10.11

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 101 - 228 3.4e-10 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 602
AasI GACNNNNNNGTC 1 cut(s) 373
Acc16I TGCGCA 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 602
AccB1I GGYRCC 1 cut(s) 162
AccBSI CCGCTC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 302
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 5 cut(s) 124, 217, 311, 481, 631
AclWI GGATC 6 cut(s) 12, 198, 211, 266, 279, 388
AcsI RAATTY 2 cut(s) 38, 583
AcyI GRCGYC 1 cut(s) 163
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 2 cut(s) 213, 282
AflIII ACRYGT 1 cut(s) 67
AgeI ACCGGT 1 cut(s) 241
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 1 cut(s) 7
AjuI GAANNNNNNNTTGG 2 cut(s) 390, 422
AluBI AGCT 4 cut(s) 261, 525, 604, 608
AluI AGCT 4 cut(s) 261, 525, 604, 608
Alw21I GWGCWC 1 cut(s) 527
Alw26I GTCTC 6 cut(s) 58, 232, 250, 689, 747, 755
AlwI GGATC 6 cut(s) 12, 198, 211, 266, 279, 388
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 530, 608
ApoI RAATTY 2 cut(s) 38, 583
AsiGI ACCGGT 1 cut(s) 241
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 4 cut(s) 165, 346, 553, 640
AspS9I GGNCC 2 cut(s) 11, 112
AsuC2I CCSGG 2 cut(s) 92, 110
AsuHPI GGTGA 2 cut(s) 106, 634
AsuII TTCGAA 1 cut(s) 36
AsuNHI GCTAGC 1 cut(s) 604
AvaII GGWCC 1 cut(s) 11
BamHI GGATCC 3 cut(s) 4, 203, 271
BanI GGYRCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 527
BarI GAAGNNNNNNTAC 2 cut(s) 274, 306
BauI CACGAG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 527
BbvI GCAGC 2 cut(s) 517, 595
BccI CCATC 4 cut(s) 430, 454, 512, 551
BceAI ACGGC 1 cut(s) 99
BcgI CGANNNNNNTGC 2 cut(s) 522, 556
BciT130I CCWGG 1 cut(s) 9
BcnI CCSGG 2 cut(s) 92, 110
BcoDI GTCTC 6 cut(s) 58, 232, 250, 689, 747, 755
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 2 cut(s) 531, 609
BfoI RGCGCY 2 cut(s) 166, 554
BfuAI ACCTGC 1 cut(s) 602
BisI GCNGC 4 cut(s) 218, 312, 531, 609
BlsI GCNGC 4 cut(s) 219, 313, 532, 610
Bme1390I CCNGG 3 cut(s) 9, 92, 110
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 11, 112
BmiI GGNNCC 6 cut(s) 6, 113, 164, 176, 205, 273
BmrFI CCNGG 3 cut(s) 9, 92, 110
BmtI GCTAGC 1 cut(s) 608
BpiI GAAGAC 1 cut(s) 79
BplI GAGNNNNNCTC 2 cut(s) 365, 397
Bpu14I TTCGAA 1 cut(s) 36
BpuMI CCSGG 2 cut(s) 92, 110
BsaAI YACGTR 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 163
BsaI GGTCTC 3 cut(s) 232, 250, 755
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 3 cut(s) 171, 206, 241
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 282
Bse118I RCCGGY 2 cut(s) 241, 307
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 2 cut(s) 213, 282
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 517, 595
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 1 cut(s) 114
BshNI GGYRCC 1 cut(s) 162
BshTI ACCGGT 1 cut(s) 241
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 527
BsiSI CCGG 7 cut(s) 75, 92, 109, 172, 207, 242, 308
BsiWI CGTACG 1 cut(s) 543
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 2 cut(s) 213, 282
BsmAI GTCTC 6 cut(s) 58, 232, 250, 689, 747, 755
BsmBI CGTCTC 1 cut(s) 689
BsmFI GGGAC 1 cut(s) 451
BsnI GGCC 1 cut(s) 114
Bso31I GGTCTC 3 cut(s) 232, 250, 755
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 527
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 6 cut(s) 4, 23, 203, 271, 393, 432
BspACI CCGC 5 cut(s) 124, 217, 311, 481, 631
BspANI GGCC 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 206
BspLI GGNNCC 6 cut(s) 6, 113, 164, 176, 205, 273
BspMAI CTGCAG 2 cut(s) 535, 613
BspMI ACCTGC 1 cut(s) 602
BspOI GCTAGC 1 cut(s) 608
BspPI GGATC 6 cut(s) 12, 198, 211, 266, 279, 388
BspQI GCTCTTC 1 cut(s) 701
BspT104I TTCGAA 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 162
BspTNI GGTCTC 3 cut(s) 232, 250, 755
BsrBI CCGCTC 1 cut(s) 124
BsrFI RCCGGY 2 cut(s) 241, 307
BssAI RCCGGY 2 cut(s) 241, 307
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 6 cut(s) 4, 23, 203, 271, 393, 432
BssNI GRCGYC 1 cut(s) 163
BssSI CACGAG 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 766
Bst6I CTCTTC 3 cut(s) 411, 701, 741
BstACI GRCGYC 1 cut(s) 163
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 579, 606
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 523
BstH2I RGCGCY 2 cut(s) 166, 554
BstHHI GCGC 4 cut(s) 165, 346, 553, 640
BstKTI GATC 6 cut(s) 7, 26, 206, 274, 396, 435
BstMAI GTCTC 6 cut(s) 58, 232, 250, 689, 747, 755
BstMBI GATC 6 cut(s) 4, 23, 203, 271, 393, 432
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 4 cut(s) 155, 341, 350, 637
BstNI CCWGG 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 3 cut(s) 7, 90, 108
BstSFI CTRYAG 2 cut(s) 531, 609
BstV1I GCAGC 2 cut(s) 517, 595
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 3 cut(s) 4, 203, 271
BstYI RGATCY 3 cut(s) 4, 203, 271
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 523
BveI ACCTGC 1 cut(s) 602
Cac8I GCNNGC 2 cut(s) 579, 606
CfoI GCGC 4 cut(s) 165, 346, 553, 640
Cfr10I RCCGGY 2 cut(s) 241, 307
Cfr13I GGNCC 2 cut(s) 11, 112
CseI GACGC 2 cut(s) 164, 741
Csp6I GTAC 1 cut(s) 544
CspAI ACCGGT 1 cut(s) 241
CviAII CATG 2 cut(s) 68, 592
CviJI RGCY 8 cut(s) 114, 149, 261, 525, 530, 604, 608, 719
CviKI_1 RGCY 8 cut(s) 114, 149, 261, 525, 530, 604, 608, 719
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 1 cut(s) 134
DinI GGCGCC 1 cut(s) 164
DpnI GATC 6 cut(s) 6, 25, 205, 273, 395, 434
DpnII GATC 6 cut(s) 4, 23, 203, 271, 393, 432
DraIII CACNNNGTG 1 cut(s) 137
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
Eam1104I CTCTTC 3 cut(s) 411, 701, 741
EarI CTCTTC 3 cut(s) 411, 701, 741
Ecl136II GAGCTC 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 527
Eco31I GGTCTC 3 cut(s) 232, 250, 755
Eco47I GGWCC 1 cut(s) 11
Eco53kI GAGCTC 1 cut(s) 525
EcoICRI GAGCTC 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 583
EcoRII CCWGG 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 527
EgeI GGCGCC 1 cut(s) 164
EheI GGCGCC 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 689
FaeI CATG 2 cut(s) 71, 595
FaiI YATR 7 cut(s) 69, 392, 504, 513, 593, 713, 784
FaqI GGGAC 1 cut(s) 451
FatI CATG 2 cut(s) 67, 591
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 4 cut(s) 218, 312, 531, 609
FokI GGATG 1 cut(s) 530
FriOI GRGCYC 1 cut(s) 527
Fsp4HI GCNGC 4 cut(s) 218, 312, 531, 609
FspBI CTAG 1 cut(s) 605
FspI TGCGCA 1 cut(s) 639
GlaI GCGC 4 cut(s) 164, 345, 552, 639
GluI GCNGC 4 cut(s) 218, 312, 531, 609
HaeII RGCGCY 2 cut(s) 166, 554
HaeIII GGCC 1 cut(s) 114
HapII CCGG 7 cut(s) 75, 92, 109, 172, 207, 242, 308
HgaI GACGC 2 cut(s) 164, 741
HhaI GCGC 4 cut(s) 165, 346, 553, 640
Hin1I GRCGYC 1 cut(s) 163
Hin1II CATG 2 cut(s) 71, 595
Hin6I GCGC 4 cut(s) 163, 344, 551, 638
HinP1I GCGC 4 cut(s) 163, 344, 551, 638
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 7 cut(s) 61, 97, 266, 374, 403, 467, 562
HpaII CCGG 7 cut(s) 75, 92, 109, 172, 207, 242, 308
HphI GGTGA 2 cut(s) 106, 634
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 2 cut(s) 265, 271
Hpy188III TCNNGA 5 cut(s) 21, 119, 207, 235, 436
Hpy8I GTNNAC 1 cut(s) 303
Hpy99I CGWCG 2 cut(s) 158, 282
HpyAV CCTTC 2 cut(s) 276, 613
HpyCH4III ACNGT 1 cut(s) 766
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 5 cut(s) 297, 335, 446, 533, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 341, 350, 637
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 293
Hsp92I GRCGYC 1 cut(s) 163
Hsp92II CATG 2 cut(s) 71, 595
HspAI GCGC 4 cut(s) 163, 344, 551, 638
KasI GGCGCC 1 cut(s) 162
Kpn2I TCCGGA 1 cut(s) 206
Kzo9I GATC 6 cut(s) 4, 23, 203, 271, 393, 432
LguI GCTCTTC 1 cut(s) 701
LmnI GCTCC 1 cut(s) 522
Lsp1109I GCAGC 2 cut(s) 517, 595
MaeI CTAG 1 cut(s) 605
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 4 cut(s) 98, 116, 129, 375
MalI GATC 6 cut(s) 6, 25, 205, 273, 395, 434
MbiI CCGCTC 1 cut(s) 124
MboI GATC 6 cut(s) 4, 23, 203, 271, 393, 432
MboII GAAGA 7 cut(s) 35, 79, 182, 398, 637, 718, 758
MfeI CAATTG 3 cut(s) 330, 348, 678
MflI RGATCY 3 cut(s) 4, 203, 271
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 6 cut(s) 38, 330, 348, 583, 678, 701
Mly113I GGCGCC 1 cut(s) 163
MlyI GAGTC 3 cut(s) 106, 383, 397
MnlI CCTC 4 cut(s) 188, 191, 541, 785
MroI TCCGGA 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 2 cut(s) 143, 728
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 7 cut(s) 75, 92, 109, 172, 207, 242, 308
MspR9I CCNGG 3 cut(s) 9, 92, 110
MunI CAATTG 3 cut(s) 330, 348, 678
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 4 cut(s) 155, 341, 350, 637
NarI GGCGCC 1 cut(s) 163
NciI CCSGG 2 cut(s) 92, 110
NdeII GATC 6 cut(s) 4, 23, 203, 271, 393, 432
NheI GCTAGC 1 cut(s) 604
NlaIII CATG 2 cut(s) 71, 595
NlaIV GGNNCC 6 cut(s) 6, 113, 164, 176, 205, 273
NmeAIII GCCGAG 2 cut(s) 139, 506
NmuCI GTSAC 4 cut(s) 98, 116, 129, 375
NsbI TGCGCA 1 cut(s) 639
NspI RCATGY 1 cut(s) 71
NspV TTCGAA 1 cut(s) 36
PaqCI CACCTGC 1 cut(s) 602
PciI ACATGT 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 701
PcsI WCGNNNNNNNCGW 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 4 cut(s) 61, 266, 467, 562
Pfl23II CGTACG 1 cut(s) 543
PfoI TCCNGGA 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 241
PkrI GCNGC 4 cut(s) 219, 313, 532, 610
PleI GAGTC 3 cut(s) 105, 382, 397
PluTI GGCGCC 1 cut(s) 166
PpsI GAGTC 3 cut(s) 105, 382, 397
Ppu21I YACGTR 1 cut(s) 294
PscI ACATGT 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspLI CGTACG 1 cut(s) 543
PspN4I GGNNCC 6 cut(s) 6, 113, 164, 176, 205, 273
PspPI GGNCC 2 cut(s) 11, 112
PstI CTGCAG 2 cut(s) 535, 613
PsuI RGATCY 3 cut(s) 4, 203, 271
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 527
SalI GTCGAC 1 cut(s) 301
SapI GCTCTTC 1 cut(s) 701
SaqAI TTAA 2 cut(s) 143, 728
SatI GCNGC 4 cut(s) 218, 312, 531, 609
Sau3AI GATC 6 cut(s) 4, 23, 203, 271, 393, 432
Sau96I GGNCC 2 cut(s) 11, 112
SchI GAGTC 3 cut(s) 106, 383, 397
ScrFI CCNGG 3 cut(s) 9, 92, 110
SduI GDGCHC 1 cut(s) 527
SetI ASST 9 cut(s) 180, 232, 263, 296, 527, 606, 610, 616, 624
SfcI CTRYAG 2 cut(s) 531, 609
SfoI GGCGCC 1 cut(s) 164
SfuI TTCGAA 1 cut(s) 36
SgrAI CRCCGGYG 1 cut(s) 307
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 6 cut(s) 38, 330, 348, 583, 678, 701
SsiI CCGC 5 cut(s) 124, 217, 311, 481, 631
SspDI GGCGCC 1 cut(s) 162
SspI AATATT 1 cut(s) 500
SspMI CTAG 1 cut(s) 605
SstI GAGCTC 1 cut(s) 527
StyD4I CCNGG 3 cut(s) 7, 90, 108
TaaI ACNGT 1 cut(s) 766
TaiI ACGT 1 cut(s) 296
TaqI TCGA 5 cut(s) 36, 234, 280, 302, 465
TasI AATT 6 cut(s) 38, 330, 348, 583, 678, 701
TauI GCSGC 2 cut(s) 220, 314
TfiI GAWTC 4 cut(s) 61, 266, 467, 562
Tru1I TTAA 2 cut(s) 143, 728
Tru9I TTAA 2 cut(s) 143, 728
TseFI GTSAC 4 cut(s) 98, 116, 129, 375
TseI GCWGC 2 cut(s) 530, 608
Tsp45I GTSAC 4 cut(s) 98, 116, 129, 375
TspDTI ATGAA 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 2 cut(s) 38, 583
XceI RCATGY 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.