RLG00000033834

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
32797405 .. 32800055
2651 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033834

Sequence Viewer

Length: 1602 bp
ATGGAACTAAGAGGCCTAGGGGACAGGTTGGGTGGTTTCGTTGCGGTGGTGGTGGTGCTTGTTTCGGCATTGGTCGTTAATGTTTCCGGTAACTTGGTTTTCCCGGTGAGCCATAAGTTTAATGGTAGAGAGGGAGCTTCTTTGAGTGAACTTAAAGCCCATGATCATCGCCGTCAGGCCAGATTTCTCGGGGCCACCCCGAATGCTGTGGATATGGTTTTGGGCGGCAGCACTAAAGCTGGGCTCTACTTCACTAAACTTGGGATTGGGAATCCTTCACACGAATATTACGTGCAAGTTGATAGCGGAAGCAACCTATTTTGGGTGAGTTGTGCTGAGTGCGGCAAAGGCTGCCCTGACAGATCTGAACTCAAGGGTGTAAAACTCACACTCTACGATCGAAACAGCTCATCCACTTCAAAGGTGGTGTCTTGTGGTGATAACTTTTGCACTTCCCCATCCATAAAAGAAATCTCCAATTGCAAGCCAGATGAGAAATGCAACTACCATTTTGAATATGAAGATAAAGATAAAACTTCCGGATACTTTGTCAAGGATGATGTGCAATTTCAGAAAGCCAGCGGAAACTTTCAAACATCCTTCACTAGTGGATCTGTAATATTCGGGTGCGGGACTCAACAATCTGGCCATCTAAATGACCCTAGGGGAGCAGTTTCCGGGGTAATTGGTTTTGACCAGCAAAATACAACCATGCTTTCACAGCTAGCAGCCGCAGGAAAGGTGAGGAATAAATTTGCACACTGCTTGGATAGCACGAAACAAGGTGGTGGAATCTGGGCTATAGGAGAAGTCGTCGAACCCAAAATGAAGTACACATCACCTATCGTATCAAATCAGTCTCTTTACAATATTGTGGTGGAGAAAATTGAGATTGGAAGTGATGCTATAGAACTTCCTACAAGTGGTGGTGGTGTTTTGGATGAAACATCTGGCAGCAGTTCAGACCAAATTATTGCAATTTTTGACAGTGGTACAACATTGGCTTATTTACCACCAAAGTTGCACGAACCAATAGTGAAGAAGGTGTCTGTGCTAACTTCATTTAGATTTATGTTTTCGACTTGGGATAAATATGTTACTTCAATTAACTCTAATATACATCCTTATTTTGATCAGATATTGGCTACGGAGCCTGGATTGAAATTTAAAAAACTTGATGACGGCATGCACCCATGTTTCGAGTATTCCAAGAACATTGATGAGAAGTTTCCTATTGTCAAGTTCACTTTCAAGAATTCCGCTTCATTGTGGGTGTATCCTCATGATTATCTGTTCTGGAACGAGGGTGCCTGGTGCCATGGTTGGATGAAAACTGATGGGGAAGACCCCAACCTTATTCTGGGAGATATGACCCTTTCGAATAAGTTGGTCGTATACGACCTTGAAAACCAGGTCCTTGGGTGGGTTGATCACAACTGTTCTTCAAGCATAAAAGTGAAAGATGACCAGTCAGGGTCAGACTACCCTGTTCAGTACCACAATCTTGCTTCTTCAGATGCTTCCAGCCCAAGACTACTAATGTCATTTGTGTTATTAGTAACTGCCGCGGCTGCTGCTATGCTGCAAATGATCTCAATATAA

Protein Analysis

534

Amino Acids

58.34

Weight (kDa)

5.88

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 83 - 269 3e-37 Xylanase inhibitor N-terminal
Asp PF00026 83 - 474 6.1e-19 Eukaryotic aspartyl protease
TAXi_C PF14541 374 - 475 5.4e-09 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1307, 1314
AccI GTMKAC 1 cut(s) 1395
AccII CGCG 1 cut(s) 1568
AccIII TCCGGA 1 cut(s) 539
AclWI GGATC 1 cut(s) 619
AcoI YGGCCR 1 cut(s) 646
AcsI RAATTY 3 cut(s) 752, 1163, 1255
AcuI CTGAAG 1 cut(s) 1497
AfaI GTAC 3 cut(s) 833, 994, 1496
AfiI CCNNNNNNNGG 4 cut(s) 322, 923, 1360, 1423
AgsI TTSAA 8 cut(s) 420, 515, 593, 1104, 1162, 1252, 1406, 1446
AhlI ACTAGT 1 cut(s) 605
AjnI CCWGG 3 cut(s) 1153, 1310, 1410
AluBI AGCT 4 cut(s) 137, 239, 408, 724
AluI AGCT 4 cut(s) 137, 239, 408, 724
Alw26I GTCTC 1 cut(s) 864
AlwI GGATC 1 cut(s) 619
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 539
AoxI GGCC 4 cut(s) 13, 177, 192, 646
ApeKI GCWGC 7 cut(s) 228, 351, 728, 954, 1571, 1574, 1582
ApoI RAATTY 3 cut(s) 752, 1163, 1255
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AspA2I CCTAGG 2 cut(s) 16, 662
AspS9I GGNCC 2 cut(s) 192, 1414
AsuC2I CCSGG 2 cut(s) 104, 679
AsuHPI GGTGA 5 cut(s) 118, 337, 449, 754, 831
AsuII TTCGAA 1 cut(s) 1379
AsuNHI GCTAGC 1 cut(s) 724
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 1414
AvrII CCTAGG 2 cut(s) 16, 662
BalI TGGCCA 1 cut(s) 648
BanI GGYRCC 2 cut(s) 1307, 1314
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 1350
BbvI GCAGC 7 cut(s) 240, 338, 740, 966, 1558, 1561, 1569
BccI CCATC 3 cut(s) 466, 657, 1331
BceAI ACGGC 2 cut(s) 156, 1198
BciT130I CCWGG 3 cut(s) 1155, 1312, 1412
BciVI GTATCC 2 cut(s) 536, 1287
BclI TGATCA 3 cut(s) 163, 1132, 1429
BcnI CCSGG 2 cut(s) 104, 679
BcoDI GTCTC 1 cut(s) 864
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 4 cut(s) 17, 606, 663, 725
BfmI CTRYAG 2 cut(s) 801, 906
BfuI GTATCC 2 cut(s) 536, 1287
BglII AGATCT 1 cut(s) 362
BlnI CCTAGG 2 cut(s) 16, 662
Bme1390I CCNGG 5 cut(s) 104, 679, 1155, 1312, 1412
Bme18I GGWCC 1 cut(s) 1414
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 192, 1414
BmiI GGNNCC 4 cut(s) 193, 1152, 1309, 1316
BmrFI CCNGG 5 cut(s) 104, 679, 1155, 1312, 1412
BmsI GCATC 2 cut(s) 892, 1507
BmtI GCTAGC 1 cut(s) 728
BpiI GAAGAC 1 cut(s) 1350
Bpu14I TTCGAA 1 cut(s) 1379
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 2 cut(s) 104, 679
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 6 cut(s) 16, 662, 678, 1318, 1417, 1566
BsaWI WCCGGW 2 cut(s) 86, 539
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 4 cut(s) 322, 923, 1360, 1423
Bse1I ACTGG 1 cut(s) 1468
BseAI TCCGGA 1 cut(s) 539
BseBI CCWGG 3 cut(s) 1155, 1312, 1412
BseDI CCNNGG 6 cut(s) 16, 662, 678, 1318, 1417, 1566
BseGI GGATG 7 cut(s) 410, 458, 562, 596, 946, 1120, 1332
BseLI CCNNNNNNNGG 4 cut(s) 322, 923, 1360, 1423
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 1468
BseXI GCAGC 7 cut(s) 240, 338, 740, 966, 1558, 1561, 1569
BseYI CCCAGC 1 cut(s) 239
Bsh1236I CGCG 1 cut(s) 1568
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 4 cut(s) 15, 179, 194, 648
BshNI GGYRCC 2 cut(s) 1307, 1314
BsiEI CGRYCG 1 cut(s) 400
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 4 cut(s) 87, 104, 540, 678
BslFI GGGAC 2 cut(s) 35, 646
BslI CCNNNNNNNGG 4 cut(s) 322, 923, 1360, 1423
BsmAI GTCTC 1 cut(s) 864
BsmFI GGGAC 2 cut(s) 35, 646
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 4 cut(s) 15, 179, 194, 648
BsoBI CYCGRG 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 1379
Bsp1286I GDGCHC 1 cut(s) 246
Bsp13I TCCGGA 1 cut(s) 539
Bsp143I GATC 7 cut(s) 163, 362, 397, 611, 1132, 1429, 1590
Bsp19I CCATGG 1 cut(s) 1318
BspANI GGCC 4 cut(s) 15, 179, 194, 648
BspCNI CTCAG 1 cut(s) 328
BspEI TCCGGA 1 cut(s) 539
BspFNI CGCG 1 cut(s) 1568
BspHI TCATGA 1 cut(s) 1282
BspLI GGNNCC 4 cut(s) 193, 1152, 1309, 1316
BspOI GCTAGC 1 cut(s) 728
BspPI GGATC 1 cut(s) 619
BspT104I TTCGAA 1 cut(s) 1379
BspT107I GGYRCC 2 cut(s) 1307, 1314
BsrI ACTGG 1 cut(s) 1468
BssECI CCNNGG 6 cut(s) 16, 662, 678, 1318, 1417, 1566
BssMI GATC 7 cut(s) 163, 362, 397, 611, 1132, 1429, 1590
BssNAI GTATAC 1 cut(s) 1396
BssT1I CCWWGG 4 cut(s) 16, 662, 1318, 1417
Bst1107I GTATAC 1 cut(s) 1396
Bst2UI CCWGG 3 cut(s) 1155, 1312, 1412
Bst4CI ACNGT 2 cut(s) 989, 1439
BstAPI GCANNNNNTGC 1 cut(s) 351
BstBAI YACGTR 1 cut(s) 292
BstBI TTCGAA 1 cut(s) 1379
BstC8I GCNNGC 4 cut(s) 485, 580, 726, 1187
BstDEI CTNAG 2 cut(s) 8, 336
BstDSI CCRYGG 2 cut(s) 1318, 1566
BstF5I GGATG 7 cut(s) 410, 458, 562, 596, 946, 1120, 1332
BstFNI CGCG 1 cut(s) 1568
BstKTI GATC 7 cut(s) 166, 365, 400, 614, 1135, 1432, 1593
BstMAI GTCTC 1 cut(s) 864
BstMBI GATC 7 cut(s) 163, 362, 397, 611, 1132, 1429, 1590
BstMCI CGRYCG 1 cut(s) 400
BstMWI GCNNNNNNNGC 6 cut(s) 348, 351, 721, 771, 1571, 1574
BstNI CCWGG 3 cut(s) 1155, 1312, 1412
BstNSI RCATGY 1 cut(s) 1189
BstSCI CCNGG 5 cut(s) 102, 677, 1153, 1310, 1410
BstSFI CTRYAG 2 cut(s) 801, 906
BstUI CGCG 1 cut(s) 1568
BstV1I GCAGC 7 cut(s) 240, 338, 740, 966, 1558, 1561, 1569
BstV2I GAAGAC 1 cut(s) 1350
BstX2I RGATCY 2 cut(s) 362, 611
BstXI CCANNNNNNTGG 1 cut(s) 1418
BstYI RGATCY 2 cut(s) 362, 611
BstZ17I GTATAC 1 cut(s) 1396
BsuI GTATCC 2 cut(s) 536, 1287
BsuRI GGCC 4 cut(s) 15, 179, 194, 648
BtgI CCRYGG 2 cut(s) 1318, 1566
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 7 cut(s) 410, 458, 562, 596, 946, 1120, 1332
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 2 cut(s) 760, 994
Cac8I GCNNGC 4 cut(s) 485, 580, 726, 1187
CciI TCATGA 1 cut(s) 1282
Cfr13I GGNCC 2 cut(s) 192, 1414
Cfr42I CCGCGG 1 cut(s) 1569
CsiI ACCWGGT 1 cut(s) 1410
Csp6I GTAC 3 cut(s) 832, 993, 1495
CspCI CAANNNNNGTGG 2 cut(s) 1002, 1037
CviAII CATG 6 cut(s) 161, 712, 1186, 1194, 1283, 1319
CviQI GTAC 3 cut(s) 832, 993, 1495
DdeI CTNAG 2 cut(s) 8, 336
DpnI GATC 7 cut(s) 165, 364, 399, 613, 1134, 1431, 1592
DpnII GATC 7 cut(s) 163, 362, 397, 611, 1132, 1429, 1590
DraI TTTAAA 1 cut(s) 1168
EaeI YGGCCR 1 cut(s) 646
Eco130I CCWWGG 4 cut(s) 16, 662, 1318, 1417
Eco147I AGGCCT 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 1414
Eco57I CTGAAG 1 cut(s) 1497
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 1414
EcoRI GAATTC 1 cut(s) 1255
EcoRII CCWGG 3 cut(s) 1153, 1310, 1410
EcoT14I CCWWGG 4 cut(s) 16, 662, 1318, 1417
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 4 cut(s) 16, 662, 1318, 1417
FaeI CATG 6 cut(s) 164, 715, 1189, 1197, 1286, 1322
FaqI GGGAC 2 cut(s) 35, 646
FatI CATG 6 cut(s) 160, 711, 1185, 1193, 1282, 1318
FauI CCCGC 1 cut(s) 623
FbaI TGATCA 3 cut(s) 163, 1132, 1429
FblI GTMKAC 1 cut(s) 1395
FokI GGATG 7 cut(s) 397, 445, 569, 583, 953, 1107, 1339
FriOI GRGCYC 1 cut(s) 246
FspBI CTAG 4 cut(s) 17, 606, 663, 725
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 4 cut(s) 15, 179, 194, 648
HapII CCGG 4 cut(s) 87, 104, 540, 678
Hin1II CATG 6 cut(s) 164, 715, 1189, 1197, 1286, 1322
HinfI GANTC 3 cut(s) 271, 634, 792
HpaII CCGG 4 cut(s) 87, 104, 540, 678
HphI GGTGA 5 cut(s) 118, 337, 449, 754, 831
Hpy166II GTNNAC 4 cut(s) 149, 834, 1245, 1396
Hpy188I TCNGA 6 cut(s) 367, 573, 964, 1137, 1480, 1516
Hpy188III TCNNGA 4 cut(s) 540, 1252, 1283, 1297
Hpy8I GTNNAC 4 cut(s) 149, 834, 1245, 1396
Hpy99I CGWCG 1 cut(s) 818
HpyAV CCTTC 3 cut(s) 285, 610, 1036
HpyCH4III ACNGT 2 cut(s) 989, 1439
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 6 cut(s) 348, 351, 721, 771, 1571, 1574
HpyF3I CTNAG 2 cut(s) 8, 336
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 6 cut(s) 164, 715, 1189, 1197, 1286, 1322
Kpn2I TCCGGA 1 cut(s) 539
Ksp22I TGATCA 3 cut(s) 163, 1132, 1429
KspI CCGCGG 1 cut(s) 1569
Kzo9I GATC 7 cut(s) 163, 362, 397, 611, 1132, 1429, 1590
LmnI GCTCC 3 cut(s) 134, 668, 1150
Lsp1109I GCAGC 7 cut(s) 240, 338, 740, 966, 1558, 1561, 1569
LweI GCATC 2 cut(s) 892, 1507
MabI ACCWGGT 1 cut(s) 1410
MaeI CTAG 4 cut(s) 17, 606, 663, 725
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 89, 1096, 1558
MalI GATC 7 cut(s) 165, 364, 399, 613, 1134, 1431, 1592
MboI GATC 7 cut(s) 163, 362, 397, 611, 1132, 1429, 1590
MboII GAAGA 5 cut(s) 533, 1051, 1355, 1434, 1503
MfeI CAATTG 1 cut(s) 478
MflI RGATCY 2 cut(s) 362, 611
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 648
MluNI TGGCCA 1 cut(s) 648
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 1 cut(s) 1304
MnlI CCTC 5 cut(s) 5, 124, 738, 1290, 1297
Mox20I TGGCCA 1 cut(s) 648
MroI TCCGGA 1 cut(s) 539
MscI TGGCCA 1 cut(s) 648
MseI TTAA 5 cut(s) 78, 120, 153, 1107, 1167
MslI CAYNNNNRTG 2 cut(s) 654, 1454
Msp20I TGGCCA 1 cut(s) 648
MspA1I CMGCKG 2 cut(s) 582, 1568
MspI CCGG 4 cut(s) 87, 104, 540, 678
MspR9I CCNGG 5 cut(s) 104, 679, 1155, 1312, 1412
MunI CAATTG 1 cut(s) 478
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 3 cut(s) 1155, 1312, 1412
MvnI CGCG 1 cut(s) 1568
MwoI GCNNNNNNNGC 6 cut(s) 348, 351, 721, 771, 1571, 1574
NciI CCSGG 2 cut(s) 104, 679
NcoI CCATGG 1 cut(s) 1318
NdeII GATC 7 cut(s) 163, 362, 397, 611, 1132, 1429, 1590
NheI GCTAGC 1 cut(s) 724
NlaIII CATG 6 cut(s) 164, 715, 1189, 1197, 1286, 1322
NlaIV GGNNCC 4 cut(s) 193, 1152, 1309, 1316
NspI RCATGY 1 cut(s) 1189
NspV TTCGAA 1 cut(s) 1379
PaeI GCATGC 1 cut(s) 1189
PagI TCATGA 1 cut(s) 1282
PceI AGGCCT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 271, 792
Ple19I CGATCG 1 cut(s) 400
PleI GAGTC 1 cut(s) 628
PpsI GAGTC 1 cut(s) 628
Ppu21I YACGTR 1 cut(s) 292
PpuMI RGGWCCY 1 cut(s) 1414
Psp5II RGGWCCY 1 cut(s) 1414
Psp6I CCWGG 3 cut(s) 1153, 1310, 1410
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 3 cut(s) 1153, 1310, 1410
PspN4I GGNNCC 4 cut(s) 193, 1152, 1309, 1316
PspPI GGNCC 2 cut(s) 192, 1414
PspPPI RGGWCCY 1 cut(s) 1414
PsuI RGATCY 2 cut(s) 362, 611
PvuI CGATCG 1 cut(s) 400
RsaI GTAC 3 cut(s) 833, 994, 1496
RsaNI GTAC 3 cut(s) 832, 993, 1495
RseI CAYNNNNRTG 2 cut(s) 654, 1454
SacII CCGCGG 1 cut(s) 1569
SaqAI TTAA 5 cut(s) 78, 120, 153, 1107, 1167
Sau3AI GATC 7 cut(s) 163, 362, 397, 611, 1132, 1429, 1590
Sau96I GGNCC 2 cut(s) 192, 1414
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 5 cut(s) 104, 679, 1155, 1312, 1412
SduI GDGCHC 1 cut(s) 246
SexAI ACCWGGT 1 cut(s) 1410
SfaNI GCATC 2 cut(s) 892, 1507
SfcI CTRYAG 2 cut(s) 801, 906
Sfr303I CCGCGG 1 cut(s) 1569
SfuI TTCGAA 1 cut(s) 1379
SgrBI CCGCGG 1 cut(s) 1569
SinI GGWCC 1 cut(s) 1414
SmiMI CAYNNNNRTG 2 cut(s) 654, 1454
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 605
SphI GCATGC 1 cut(s) 1189
SseBI AGGCCT 1 cut(s) 15
SspI AATATT 3 cut(s) 287, 621, 871
SspMI CTAG 4 cut(s) 17, 606, 663, 725
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 5 cut(s) 102, 677, 1153, 1310, 1410
StyI CCWWGG 4 cut(s) 16, 662, 1318, 1417
TaaI ACNGT 2 cut(s) 989, 1439
TaiI ACGT 1 cut(s) 294
TaqI TCGA 5 cut(s) 400, 816, 1079, 1200, 1379
TatI WGTACW 1 cut(s) 831
TauI GCSGC 5 cut(s) 228, 345, 734, 1568, 1571
TfiI GAWTC 2 cut(s) 271, 792
Tru1I TTAA 5 cut(s) 78, 120, 153, 1107, 1167
Tru9I TTAA 5 cut(s) 78, 120, 153, 1107, 1167
TscAI CASTG 2 cut(s) 767, 994
TseI GCWGC 7 cut(s) 228, 351, 728, 954, 1571, 1574, 1582
TspDTI ATGAA 6 cut(s) 534, 842, 957, 1050, 1254, 1343
TspGWI ACGGA 1 cut(s) 1163
TspRI CASTG 2 cut(s) 767, 994
VpaK11BI GGWCC 1 cut(s) 1414
XapI RAATTY 3 cut(s) 752, 1163, 1255
XceI RCATGY 1 cut(s) 1189
XcmI CCANNNNNNNNNTGG 3 cut(s) 119, 421, 1357
XmaJI CCTAGG 2 cut(s) 16, 662
XmiI GTMKAC 1 cut(s) 1395
XspI CTAG 4 cut(s) 17, 606, 663, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.