Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Reverse (-)

80854721 .. 80855330

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG591900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGATTTCGCAGCTGGCTGCAGCTGGGAAGGTGAAGAAGCAGTTTGCGAATTTTTTGGACAATGTGAATTGGGGTGGCATTTTCACAATTAGGAAAGTTGTGGAGACGAAATTGAAGCTGAACATGACTCCATTGGTGGCCAAAAGTGCGCATTACAATGTGGCCATGGAGGCGATTGAGGTGGGTGGTGATGTTGTAGACCTGCCTTTGGATACATTTGACAGTGGAGACAAGGCAGTGGTGGTGGTCATGAGCAGAAGGGCTTGGGATTTAAGACGCAAAACCAACGAACTCGTCTTTGCTAAATGGATACAAAACACCCCACGCTTGATCCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

112

Amino Acids

12.53

Weight (kDa)

9.75

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	325
AcoI	YGGCCR	2 cut(s)	138, 162
AcsI	RAATTY	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	115
AluBI	AGCT	3 cut(s)	13, 23, 118
AluI	AGCT	3 cut(s)	13, 23, 118
Alw26I	GTCTC	2 cut(s)	98, 222
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	2 cut(s)	138, 162
ApeKI	GCWGC	3 cut(s)	10, 17, 20
ApoI	RAATTY	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	43, 200
BalI	TGGCCA	2 cut(s)	140, 164
BbvI	GCAGC	3 cut(s)	4, 22, 32
BciVI	GTATCC	2 cut(s)	205, 303
BcoDI	GTCTC	2 cut(s)	98, 222
BfmI	CTRYAG	1 cut(s)	18
BfuAI	ACCTGC	1 cut(s)	210
BfuI	GTATCC	2 cut(s)	205, 303
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	11, 18, 21
BlsI	GCNGC	3 cut(s)	12, 19, 22
BsaJI	CCNNGG	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseXI	GCAGC	3 cut(s)	4, 22, 32
BseYI	CCCAGC	1 cut(s)	23
BshFI	GGCC	2 cut(s)	140, 164
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	98, 222
BsmBI	CGTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	140, 164
Bsp143I	GATC	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	165
BspANI	GGCC	2 cut(s)	140, 164
BspHI	TCATGA	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	1 cut(s)	333
BstMAI	GTCTC	2 cut(s)	98, 222
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 170
BstSFI	CTRYAG	1 cut(s)	18
BstV1I	GCAGC	3 cut(s)	4, 22, 32
BsuI	GTATCC	2 cut(s)	205, 303
BsuRI	GGCC	2 cut(s)	140, 164
BtgI	CCRYGG	1 cut(s)	165
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	229, 243
BveI	ACCTGC	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	15
CciI	TCATGA	1 cut(s)	249
CfoI	GCGC	1 cut(s)	151
CseI	GACGC	1 cut(s)	285
CviAII	CATG	3 cut(s)	124, 166, 250
CviJI	RGCY	7 cut(s)	13, 17, 23, 118, 140, 164, 263
CviKI_1	RGCY	7 cut(s)	13, 17, 23, 118, 140, 164, 263
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
EaeI	YGGCCR	2 cut(s)	138, 162
Eco130I	CCWWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	3 cut(s)	127, 169, 253
FaiI	YATR	3 cut(s)	125, 167, 251
FatI	CATG	3 cut(s)	123, 165, 249
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	11, 18, 21
Fsp4HI	GCNGC	3 cut(s)	11, 18, 21
FspAI	RTGCGCAY	1 cut(s)	150
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	3 cut(s)	11, 18, 21
GsaI	CCCAGC	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	140, 164
HgaI	GACGC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	3 cut(s)	127, 169, 253
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	2 cut(s)	43, 200
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	22, 252
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 170
Hsp92II	CATG	3 cut(s)	127, 169, 253
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	330
LpnPI	CCDG	2 cut(s)	9, 215
Lsp1109I	GCAGC	3 cut(s)	4, 22, 32
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MboII	GAAGA	1 cut(s)	46
MlsI	TGGCCA	2 cut(s)	140, 164
MluCI	AATT	4 cut(s)	49, 67, 87, 110
MluNI	TGGCCA	2 cut(s)	140, 164
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	2 cut(s)	163, 172
Mox20I	TGGCCA	2 cut(s)	140, 164
MscI	TGGCCA	2 cut(s)	140, 164
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	156
Msp20I	TGGCCA	2 cut(s)	140, 164
MspA1I	CMGCKG	2 cut(s)	13, 23
MwoI	GCNNNNNNNGC	2 cut(s)	146, 170
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	3 cut(s)	127, 169, 253
NsbI	TGCGCA	1 cut(s)	150
PagI	TCATGA	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	12, 19, 22
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	22
PvuII	CAGCTG	2 cut(s)	13, 23
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	3 cut(s)	11, 18, 21
Sau3AI	GATC	1 cut(s)	330
SchI	GAGTC	1 cut(s)	121
SetI	ASST	6 cut(s)	15, 25, 33, 120, 183, 204
SfcI	CTRYAG	1 cut(s)	18
SgeI	CNNG	9 cut(s)	26, 36, 136, 178, 214, 244, 262, 276, 305
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	4 cut(s)	49, 67, 87, 110
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	224
TasI	AATT	4 cut(s)	49, 67, 87, 110
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	2 cut(s)	229, 243
TseI	GCWGC	3 cut(s)	10, 17, 20
TspRI	CASTG	2 cut(s)	229, 243
XapI	RAATTY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.