MD04G1246000.v1.1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
32127592 .. 32131175
3584 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1246000.v1.1.491

Sequence Viewer

Length: 1479 bp
ATGGCGGCAACAGCAAGGACAAGAGTAGCGCTGTTGGGTGGTTTTCTGGTTTTTTTCGCTTCGGCAGTAAATGTCTCGGGTAACATGGTGTTTCCGGTGAACCATAAGTTTAAGGGTCCTGGGAAGCAGGTGTCTTTGGGTGCATGGAAAGAACATGATGCTCGCCGTCACCGGAGGCTTCTCGCCGGCGCAGACTCCGCTATAGATTTGCAATTAGGTGGCAATGGCCATCCTTCTGAAGCCGGGCTCTACATCGCGAAAATCGGACTTGGCTCTCCTTCAAAGGACTTTCATGTGCAAGTTGATACAGGAAGTGACGTTTTATGGGTGAATTGTGCAGAGTGCAGCAACTGTCCTACTAAAAATAATCTTGGTTTTAAGCTCACAATGTATGATGCAAAGAGCTCTTCAACTTCAAGCAAGGTTACATGTGATCAAGAGTTCTGCACTTCCTCATTCAACGGTAAACTTCCTGATTGCAAGGCAGATATGCTTTGCAATTATAGTATCTCGTACGGAGATGGAAGCACAACTTCTGGTTACTATGTCAAGGACAATATCCAACTTGATAAAGTCAATGGAAATCATCAAACAACCTCAACATATGGAACCGTAGTATTCGGGTGCGGAGCTAAACAATCTGGGAATCTTGGTAAATCTCCTGGAGCAGTTGATGGGATACTTGGTTTTGGACAGGCAAATGCATCCGTAATTTCACAGCTGTCTTCATCTGGAAAGGTGAAAAAACAATTCGCACACTGCTTGGATAACGTGAAAGGTGGTGGAATTTGGGCCATTGGGGAAGTGGTGGAACCAAAAGTGAAAAACACAACTCCGCTGATACCAAATCTGCCACATTATACTGTTACGGTGAAGTCCGTTGAAGTGGGTGGCGATGTTGTAGATTTTCCCACAGATTTATTTGGCCTTTTCGAAGACCGGAACGGGGTAGTAATTGACAGTGGAACAACCTTGGCTTATCTTTCACCGGAGTTTTATGAACCTTTTATGAAAAAGATATATGCTCGACAGTCTGGATTGAAAAAGCATACTGTTGACGAGCAGTTTACATGTTTTGAGTATTCCAGAAATGTTGATGATGGATTTCCAGTTGTGAAGTTTAATTTCAAGAATTCTGCTGTGTTGACTGCATATCCTCATGATTATCTGTTCCAGTTAAAGGATGATGTCTGGTGTTCTGGTTGGCAAACCAACTCCATGAAATCTAAAGACGGAAAGTCCATGACTATTCTGGGAGATTTAGTACTTTCGAATAAGCTAGTCCTGTATGATATCGAAAACCAAGCTATTGGGTGGACTGACTACAACTGCACTTCAAGCATCAAATTGAAAGATGAGAAGTCAGGGCAGGTGTACTCGGTCGGTGCCCACAATCTTTCTTCAGCTTCGGGTCCGATGATTGGAAGGTTATTGGCATTCTTCTTGTTAGTGATTTCCATGCTGCAAATATTGATTTAA

Protein Analysis

493

Amino Acids

53.25

Weight (kDa)

7.88

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 267 5e-40 Xylanase inhibitor N-terminal
Asp PF00026 84 - 439 5.9e-25 Eukaryotic aspartyl protease
TAXi_C PF14541 286 - 440 1.6e-22 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 118, 1360
Acc36I ACCTGC 2 cut(s) 118, 1360
AccB1I GGYRCC 1 cut(s) 1385
AccII CGCG 1 cut(s) 257
AciI CCGC 4 cut(s) 5, 198, 627, 836
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 2 cut(s) 786, 1132
AcuI CTGAAG 2 cut(s) 258, 1386
AfaI GTAC 3 cut(s) 515, 1266, 1376
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 3 cut(s) 946, 1180, 1421
AflIII ACRYGT 2 cut(s) 428, 1070
AgsI TTSAA 9 cut(s) 282, 411, 417, 460, 884, 1042, 1129, 1338, 1351
AhdI GACNNNNNGTC 1 cut(s) 1237
AjnI CCWGG 2 cut(s) 118, 661
AluBI AGCT 7 cut(s) 382, 405, 632, 721, 1279, 1307, 1406
AluI AGCT 7 cut(s) 382, 405, 632, 721, 1279, 1307, 1406
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 79
AlwNI CAGNNNCTG 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 76
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 3 cut(s) 226, 792, 925
ApeKI GCWGC 2 cut(s) 345, 1462
ApoI RAATTY 2 cut(s) 786, 1132
AspLEI GCGC 2 cut(s) 31, 191
AspS9I GGNCC 3 cut(s) 116, 792, 1412
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 6 cut(s) 109, 161, 340, 751, 883, 978
AsuII TTCGAA 2 cut(s) 933, 1271
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 2 cut(s) 116, 1412
BaeGI GKGCMC 1 cut(s) 1390
BalI TGGCCA 1 cut(s) 228
BanI GGYRCC 1 cut(s) 1385
BanII GRGCYC 2 cut(s) 249, 407
BbsI GAAGAC 2 cut(s) 717, 942
Bbv12I GWGCWC 1 cut(s) 407
BbvI GCAGC 2 cut(s) 357, 1449
BccI CCATC 4 cut(s) 237, 515, 668, 1094
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 120, 663
BciVI GTATCC 1 cut(s) 672
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 1280
BfmI CTRYAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 2 cut(s) 118, 1360
BfuI GTATCC 1 cut(s) 672
BisI GCNGC 3 cut(s) 6, 346, 1463
BlsI GCNGC 3 cut(s) 7, 347, 1464
BmcAI AGTACT 1 cut(s) 1266
Bme1390I CCNGG 3 cut(s) 120, 244, 663
Bme18I GGWCC 2 cut(s) 116, 1412
BmeRI GACNNNNNGTC 1 cut(s) 1237
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 3 cut(s) 116, 792, 1412
BmiI GGNNCC 5 cut(s) 117, 610, 813, 1387, 1413
BmrFI CCNGG 3 cut(s) 120, 244, 663
BmsI GCATC 4 cut(s) 148, 385, 713, 1350
BpiI GAAGAC 2 cut(s) 717, 942
BpmI CTGGAG 1 cut(s) 684
Bpu14I TTCGAA 2 cut(s) 933, 1271
BpuMI CCSGG 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 119, 972
BsaWI WCCGGW 4 cut(s) 94, 171, 939, 988
BsaXI ACNNNNNCTCC 2 cut(s) 1248, 1278
Bsc4I CCNNNNNNNGG 3 cut(s) 946, 1180, 1421
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 2 cut(s) 1109, 1174
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 2 cut(s) 120, 663
BseDI CCNNGG 2 cut(s) 119, 972
BseGI GGATG 3 cut(s) 229, 704, 1189
BseLI CCNNNNNNNGG 3 cut(s) 946, 1180, 1421
BseMI GCAATG 1 cut(s) 229
BseNI ACTGG 2 cut(s) 1109, 1174
BseSI GKGCMC 1 cut(s) 1390
BseXI GCAGC 2 cut(s) 357, 1449
BsgI GTGCAG 4 cut(s) 357, 364, 430, 1315
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 1383
BshFI GGCC 3 cut(s) 228, 794, 927
BshNI GGYRCC 1 cut(s) 1385
BsiEI CGRYCG 1 cut(s) 1383
BsiHKAI GWGCWC 1 cut(s) 407
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 6 cut(s) 95, 172, 186, 243, 940, 989
BsiWI CGTACG 1 cut(s) 513
BslI CCNNNNNNNGG 3 cut(s) 946, 1180, 1421
BsmAI GTCTC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 1436
BsnI GGCC 3 cut(s) 228, 794, 927
BsoBI CYCGRG 1 cut(s) 76
Bsp119I TTCGAA 2 cut(s) 933, 1271
Bsp1286I GDGCHC 3 cut(s) 249, 407, 1390
Bsp143I GATC 1 cut(s) 433
Bsp68I TCGCGA 1 cut(s) 257
BspACI CCGC 4 cut(s) 5, 198, 627, 836
BspANI GGCC 3 cut(s) 228, 794, 927
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 1159
BspLI GGNNCC 5 cut(s) 117, 610, 813, 1387, 1413
BspMI ACCTGC 2 cut(s) 118, 1360
BspQI GCTCTTC 1 cut(s) 412
BspT104I TTCGAA 2 cut(s) 933, 1271
BspT107I GGYRCC 1 cut(s) 1385
BsrDI GCAATG 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 2 cut(s) 1109, 1174
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 119, 972
BssMI GATC 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 972
Bst2UI CCWGG 2 cut(s) 120, 663
Bst4CI ACNGT 8 cut(s) 353, 464, 613, 865, 871, 962, 1032, 1054
Bst6I CTCTTC 1 cut(s) 412
BstBI TTCGAA 2 cut(s) 933, 1271
BstC8I GCNNGC 2 cut(s) 163, 187
BstF5I GGATG 3 cut(s) 229, 704, 1189
BstFNI CGCG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 2 cut(s) 31, 191
BstKTI GATC 1 cut(s) 436
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 433
BstMCI CGRYCG 1 cut(s) 1383
BstMWI GCNNNNNNNGC 3 cut(s) 11, 197, 1338
BstNI CCWGG 2 cut(s) 120, 663
BstNSI RCATGY 2 cut(s) 432, 1074
BstSCI CCNGG 3 cut(s) 118, 242, 661
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 1390
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 357, 1449
BstV2I GAAGAC 2 cut(s) 717, 942
BstXI CCANNNNNNTGG 1 cut(s) 1310
BsuI GTATCC 1 cut(s) 672
BsuRI GGCC 3 cut(s) 228, 794, 927
BtgZI GCGATG 2 cut(s) 238, 909
BtsCI GGATG 3 cut(s) 229, 704, 1189
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 2 cut(s) 757, 967
BtuMI TCGCGA 1 cut(s) 257
BveI ACCTGC 2 cut(s) 118, 1360
Cac8I GCNNGC 2 cut(s) 163, 187
CaiI CAGNNNCTG 1 cut(s) 351
CciI TCATGA 1 cut(s) 1159
CfoI GCGC 2 cut(s) 31, 191
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 3 cut(s) 116, 792, 1412
Csp6I GTAC 3 cut(s) 514, 1265, 1375
CviQI GTAC 3 cut(s) 514, 1265, 1375
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
DriI GACNNNNNGTC 1 cut(s) 1237
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 412
Eam1105I GACNNNNNGTC 1 cut(s) 1237
EarI CTCTTC 1 cut(s) 412
Ecl136II GAGCTC 1 cut(s) 405
Eco130I CCWWGG 1 cut(s) 972
Eco24I GRGCYC 2 cut(s) 249, 407
Eco32I GATATC 1 cut(s) 1294
Eco47I GGWCC 2 cut(s) 116, 1412
Eco47III AGCGCT 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 405
Eco57I CTGAAG 2 cut(s) 258, 1386
Eco88I CYCGRG 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 1132
EcoRII CCWGG 2 cut(s) 118, 661
EcoRV GATATC 1 cut(s) 1294
EcoT14I CCWWGG 1 cut(s) 972
EcoT22I ATGCAT 1 cut(s) 706
EcoT38I GRGCYC 2 cut(s) 249, 407
ErhI CCWWGG 1 cut(s) 972
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FauNDI CATATG 1 cut(s) 604
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 6, 346, 1463
FokI GGATG 3 cut(s) 216, 691, 1196
FriOI GRGCYC 2 cut(s) 249, 407
Fsp4HI GCNGC 3 cut(s) 6, 346, 1463
FspBI CTAG 1 cut(s) 1280
GlaI GCGC 2 cut(s) 30, 190
GluI GCNGC 3 cut(s) 6, 346, 1463
GsuI CTGGAG 1 cut(s) 684
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 3 cut(s) 228, 794, 927
HapII CCGG 6 cut(s) 95, 172, 186, 243, 940, 989
HhaI GCGC 2 cut(s) 31, 191
Hin6I GCGC 2 cut(s) 29, 189
HinP1I GCGC 2 cut(s) 29, 189
HincII GTYRAC 2 cut(s) 1057, 1146
HindII GTYRAC 2 cut(s) 1057, 1146
HinfI GANTC 2 cut(s) 194, 646
HpaII CCGG 6 cut(s) 95, 172, 186, 243, 940, 989
HphI GGTGA 6 cut(s) 109, 161, 340, 751, 883, 978
Hpy166II GTNNAC 7 cut(s) 100, 467, 1057, 1068, 1146, 1317, 1375
Hpy188I TCNGA 3 cut(s) 238, 266, 1416
Hpy188III TCNNGA 8 cut(s) 256, 437, 473, 732, 1035, 1086, 1129, 1160
Hpy8I GTNNAC 7 cut(s) 100, 467, 1057, 1068, 1146, 1317, 1375
HpyAV CCTTC 3 cut(s) 243, 288, 1419
HpyCH4III ACNGT 8 cut(s) 353, 464, 613, 865, 871, 962, 1032, 1054
HpyCH4IV ACGT 2 cut(s) 318, 771
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 197, 1338
HpySE526I ACGT 2 cut(s) 318, 771
HspAI GCGC 2 cut(s) 29, 189
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 1 cut(s) 433
LguI GCTCTTC 1 cut(s) 412
LmnI GCTCC 2 cut(s) 629, 665
Lsp1109I GCAGC 2 cut(s) 357, 1449
LweI GCATC 4 cut(s) 148, 385, 713, 1350
MaeI CTAG 1 cut(s) 1280
MaeII ACGT 2 cut(s) 318, 771
MaeIII GTNAC 6 cut(s) 80, 167, 314, 424, 539, 865
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 5 cut(s) 399, 717, 947, 1392, 1432
MhlI GDGCHC 3 cut(s) 249, 407, 1390
MlsI TGGCCA 1 cut(s) 228
MluNI TGGCCA 1 cut(s) 228
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 586
MnlI CCTC 4 cut(s) 168, 463, 607, 1167
Mox20I TGGCCA 1 cut(s) 228
Mph1103I ATGCAT 1 cut(s) 706
MreI CGCCGGCG 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 185
MscI TGGCCA 1 cut(s) 228
MseI TTAA 5 cut(s) 111, 378, 1122, 1178, 1477
Msp20I TGGCCA 1 cut(s) 228
MspA1I CMGCKG 2 cut(s) 721, 838
MspI CCGG 6 cut(s) 95, 172, 186, 243, 940, 989
MspR9I CCNGG 3 cut(s) 120, 244, 663
Mva1269I GAATGC 1 cut(s) 1436
MvaI CCWGG 2 cut(s) 120, 663
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 3 cut(s) 11, 197, 1338
NaeI GCCGGC 1 cut(s) 187
NciI CCSGG 1 cut(s) 244
NdeI CATATG 1 cut(s) 604
NdeII GATC 1 cut(s) 433
NgoMIV GCCGGC 1 cut(s) 185
NlaIV GGNNCC 5 cut(s) 117, 610, 813, 1387, 1413
NmuCI GTSAC 2 cut(s) 167, 314
NruI TCGCGA 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 706
NspI RCATGY 2 cut(s) 432, 1074
NspV TTCGAA 2 cut(s) 933, 1271
PagI TCATGA 1 cut(s) 1159
PaqCI CACCTGC 2 cut(s) 118, 1360
PciI ACATGT 2 cut(s) 428, 1070
PciSI GCTCTTC 1 cut(s) 412
PctI GAATGC 1 cut(s) 1436
PdiI GCCGGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 646
Pfl23II CGTACG 1 cut(s) 513
PfoI TCCNGGA 1 cut(s) 661
PkrI GCNGC 3 cut(s) 7, 347, 1464
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 2 cut(s) 428, 1070
Psp124BI GAGCTC 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 118, 661
PspGI CCWGG 2 cut(s) 118, 661
PspLI CGTACG 1 cut(s) 513
PspN4I GGNNCC 5 cut(s) 117, 610, 813, 1387, 1413
PspPI GGNCC 3 cut(s) 116, 792, 1412
PspPPI RGGWCCY 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 351
PvuII CAGCTG 1 cut(s) 721
RruI TCGCGA 1 cut(s) 257
RsaI GTAC 3 cut(s) 515, 1266, 1376
RsaNI GTAC 3 cut(s) 514, 1265, 1375
SacI GAGCTC 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 412
SaqAI TTAA 5 cut(s) 111, 378, 1122, 1178, 1477
SatI GCNGC 3 cut(s) 6, 346, 1463
Sau3AI GATC 1 cut(s) 433
Sau96I GGNCC 3 cut(s) 116, 792, 1412
ScaI AGTACT 1 cut(s) 1266
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 3 cut(s) 120, 244, 663
SduI GDGCHC 3 cut(s) 249, 407, 1390
SfaNI GCATC 4 cut(s) 148, 385, 713, 1350
SfcI CTRYAG 1 cut(s) 201
SfuI TTCGAA 2 cut(s) 933, 1271
SgrAI CRCCGGYG 1 cut(s) 185
SinI GGWCC 2 cut(s) 116, 1412
SsiI CCGC 4 cut(s) 5, 198, 627, 836
SspI AATATT 1 cut(s) 1470
SspMI CTAG 1 cut(s) 1280
SstI GAGCTC 1 cut(s) 407
StyD4I CCNGG 3 cut(s) 118, 242, 661
StyI CCWWGG 1 cut(s) 972
TaaI ACNGT 8 cut(s) 353, 464, 613, 865, 871, 962, 1032, 1054
TaiI ACGT 2 cut(s) 321, 774
TaqI TCGA 4 cut(s) 933, 1027, 1271, 1296
TaqII GACCGA 1 cut(s) 1369
TatI WGTACW 2 cut(s) 1264, 1374
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 5 cut(s) 111, 378, 1122, 1178, 1477
Tru9I TTAA 5 cut(s) 111, 378, 1122, 1178, 1477
TscAI CASTG 2 cut(s) 764, 967
TseFI GTSAC 2 cut(s) 167, 314
TseI GCWGC 2 cut(s) 345, 1462
Tsp45I GTSAC 2 cut(s) 167, 314
TspDTI ATGAA 5 cut(s) 281, 717, 1014, 1025, 1235
TspGWI ACGGA 4 cut(s) 531, 697, 868, 1248
TspRI CASTG 2 cut(s) 764, 967
VpaK11BI GGWCC 2 cut(s) 116, 1412
XapI RAATTY 2 cut(s) 786, 1132
XceI RCATGY 2 cut(s) 432, 1074
XcmI CCANNNNNNNNNTGG 2 cut(s) 802, 1249
XspI CTAG 1 cut(s) 1280
ZrmI AGTACT 1 cut(s) 1266
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.