Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Reverse (-)

32773532 .. 32775466

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033833

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAAACAGTTCTTCCACTTCAAAGGTGTGGGACGAAACAATCTGGCGGGCTAAATGACCCTAAGCTAGCAGTTTCCGGGATAATTGGTTTTGCCCAGGATAATACATCCATGCTTTCACAGCTAGCAGCCGCAGGAAAGGTGAGGAAGAAATTTGCACGCTGCTTGGATAACACGAAACACGGTGGTGGAATCTGGGCTATAGGAGAAGTCGTGGAACCCAAAATGAAGTTTCATTACAATGTTGTGTTGGAGAAAATTGAGGTTGGAAGTGATGCTATAGAACTTCCTACTACTGGTGGTGGTGTTTTTGATGAAAAATCTGGCAGCAGTTCAGACCAAAATATGGCAATTTTTGACAGTGGTACAACATTGGCTTATTTACCACCAAAGTTGCAGGAACCAAGAGTGAAGAAGATATTGGCTACGGAGCCTGGATTCAATGACGACGAATTAACATGTTTAGAGTATTCCAAAAACGTTGATAAAAAGTTTCCTATTGTCAAGTTCACTTTCAAGAATTCCGCTTCATTGTGGGTGTATCCTCATGATTATCTGTTCAGTGTGAAAGAGGGTGCCTGGTGTCATGGTTGGATGAAATCTGCTCGGGAAGACCCCGACATTCTTCTGGGAGATATGATCCTTTCAAATAAGGTAGTCGTATACGATCTTGAAAAGCAGGTCCTTGGGTGGGTTGATCACAACTGTTCTTCAAACATAAAAGTGAAAGATGAGTCAGGGTCAGACGACTCTGTTCAGTACCATAATCTTGCTTCTTCAGATGCTTCCAGATTACAAATGTCATTCGTGTTATTAGTAACTGCTGCTGCTGCTGCTATGCTGCAAATGATCTCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

287

Amino Acids

31.34

Weight (kDa)

5.72

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	10 - 69	2.1e-08	Xylanase inhibitor N-terminal
Asp	PF00026	26 - 230	1.2e-11	Eukaryotic aspartyl protease
TAXi_C	PF14541	79 - 231	1.7e-12	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	670
AccB1I	GGYRCC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	346
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	3 cut(s)	48, 132, 525
AclI	AACGTT	1 cut(s)	480
AclWI	GGATC	1 cut(s)	634
AcsI	RAATTY	2 cut(s)	152, 520
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	2 cut(s)	367, 761
AfiI	CCNNNNNNNGG	3 cut(s)	296, 346, 691
AflIII	ACRYGT	1 cut(s)	458
AgsI	TTSAA	6 cut(s)	23, 442, 517, 648, 674, 714
AjnI	CCWGG	3 cut(s)	96, 433, 578
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AleI	CACNNNNGTG	1 cut(s)	186
AluBI	AGCT	2 cut(s)	67, 124
AluI	AGCT	2 cut(s)	67, 124
AlwI	GGATC	1 cut(s)	634
Ama87I	CYCGRG	1 cut(s)	606
ApeKI	GCWGC	8 cut(s)	128, 162, 327, 824, 827, 830, 833, 841
ApoI	RAATTY	2 cut(s)	152, 520
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	682
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	154
AsuNHI	GCTAGC	2 cut(s)	67, 124
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	575
BarI	GAAGNNNNNNTAC	2 cut(s)	221, 253
BbsI	GAAGAC	1 cut(s)	618
BbvI	GCAGC	8 cut(s)	140, 149, 339, 811, 814, 817, 820, 828
BciT130I	CCWGG	3 cut(s)	98, 435, 580
BciVI	GTATCC	1 cut(s)	552
BclI	TGATCA	1 cut(s)	697
BcnI	CCSGG	1 cut(s)	79
BfaI	CTAG	2 cut(s)	68, 125
BfmI	CTRYAG	2 cut(s)	201, 279
BfuAI	ACCTGC	1 cut(s)	670
BfuI	GTATCC	1 cut(s)	552
BisI	GCNGC	9 cut(s)	129, 132, 163, 328, 825, 828, 831, 834, 842
BlsI	GCNGC	9 cut(s)	130, 133, 164, 329, 826, 829, 832, 835, 843
Bme1390I	CCNGG	4 cut(s)	79, 98, 435, 580
Bme18I	GGWCC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	4 cut(s)	219, 402, 432, 577
BmrFI	CCNGG	4 cut(s)	79, 98, 435, 580
BmsI	GCATC	2 cut(s)	265, 772
BmtI	GCTAGC	2 cut(s)	71, 128
BpiI	GAAGAC	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	96, 685
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 346, 691
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	3 cut(s)	98, 435, 580
BseDI	CCNNGG	2 cut(s)	96, 685
BseGI	GGATG	2 cut(s)	107, 600
BseLI	CCNNNNNNNGG	3 cut(s)	296, 346, 691
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	8 cut(s)	140, 149, 339, 811, 814, 817, 820, 828
BshNI	GGYRCC	1 cut(s)	575
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	3 cut(s)	296, 346, 691
BsmFI	GGGAC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	606
Bsp143I	GATC	4 cut(s)	639, 667, 697, 849
BspACI	CCGC	3 cut(s)	48, 132, 525
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	4 cut(s)	219, 402, 432, 577
BspMI	ACCTGC	1 cut(s)	670
BspOI	GCTAGC	2 cut(s)	71, 128
BspPI	GGATC	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	575
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	2 cut(s)	96, 685
BssMI	GATC	4 cut(s)	639, 667, 697, 849
BssNAI	GTATAC	1 cut(s)	664
BssT1I	CCWWGG	1 cut(s)	685
Bst1107I	GTATAC	1 cut(s)	664
Bst2UI	CCWGG	3 cut(s)	98, 435, 580
Bst4CI	ACNGT	4 cut(s)	10, 185, 362, 707
BstC8I	GCNNGC	4 cut(s)	50, 69, 126, 160
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	107, 600
BstKTI	GATC	4 cut(s)	642, 670, 700, 852
BstMBI	GATC	4 cut(s)	639, 667, 697, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 830, 833
BstNI	CCWGG	3 cut(s)	98, 435, 580
BstNSI	RCATGY	1 cut(s)	462
BstSCI	CCNGG	4 cut(s)	77, 96, 433, 578
BstSFI	CTRYAG	2 cut(s)	201, 279
BstV1I	GCAGC	8 cut(s)	140, 149, 339, 811, 814, 817, 820, 828
BstV2I	GAAGAC	1 cut(s)	618
BstZ17I	GTATAC	1 cut(s)	664
BsuI	GTATCC	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	107, 600
BtsIMutI	CAGTG	2 cut(s)	367, 568
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	4 cut(s)	50, 69, 126, 160
CciI	TCATGA	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	682
Csp6I	GTAC	2 cut(s)	366, 760
CspCI	CAANNNNNGTGG	2 cut(s)	375, 410
CviAII	CATG	4 cut(s)	112, 459, 548, 587
CviJI	RGCY	8 cut(s)	52, 67, 124, 131, 200, 377, 425, 433
CviKI_1	RGCY	8 cut(s)	52, 67, 124, 131, 200, 377, 425, 433
CviQI	GTAC	2 cut(s)	366, 760
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	4 cut(s)	641, 669, 699, 851
DpnII	GATC	4 cut(s)	639, 667, 697, 849
Eco130I	CCWWGG	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRI	GAATTC	1 cut(s)	520
EcoRII	CCWGG	3 cut(s)	96, 433, 578
EcoT14I	CCWWGG	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	685
FaeI	CATG	4 cut(s)	115, 462, 551, 590
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	4 cut(s)	111, 458, 547, 586
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	697
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	9 cut(s)	129, 132, 163, 328, 825, 828, 831, 834, 842
FokI	GGATG	2 cut(s)	94, 607
Fsp4HI	GCNGC	9 cut(s)	129, 132, 163, 328, 825, 828, 831, 834, 842
FspBI	CTAG	2 cut(s)	68, 125
GluI	GCNGC	9 cut(s)	129, 132, 163, 328, 825, 828, 831, 834, 842
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	4 cut(s)	115, 462, 551, 590
HinfI	GANTC	4 cut(s)	192, 438, 734, 749
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	510, 664
Hpy188I	TCNGA	3 cut(s)	337, 745, 781
Hpy188III	TCNNGA	5 cut(s)	517, 548, 608, 671, 789
Hpy8I	GTNNAC	2 cut(s)	510, 664
Hpy99I	CGWCG	1 cut(s)	452
HpyCH4III	ACNGT	4 cut(s)	10, 185, 362, 707
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	3 cut(s)	158, 397, 844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 830, 833
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	4 cut(s)	115, 462, 551, 590
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	4 cut(s)	639, 667, 697, 849
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	8 cut(s)	140, 149, 339, 811, 814, 817, 820, 828
LweI	GCATC	2 cut(s)	265, 772
MaeI	CTAG	2 cut(s)	68, 125
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	817
MalI	GATC	4 cut(s)	641, 669, 699, 851
MboI	GATC	4 cut(s)	639, 667, 697, 849
MboII	GAAGA	8 cut(s)	5, 160, 424, 427, 617, 623, 702, 768
MluCI	AATT	6 cut(s)	84, 152, 258, 351, 452, 520
MlyI	GAGTC	2 cut(s)	743, 743
MmeI	TCCRAC	3 cut(s)	231, 247, 572
MnlI	CCTC	4 cut(s)	138, 256, 555, 565
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	1 cut(s)	455
MslI	CAYNNNNRTG	3 cut(s)	186, 240, 722
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	4 cut(s)	79, 98, 435, 580
MvaI	CCWGG	3 cut(s)	98, 435, 580
MwoI	GCNNNNNNNGC	3 cut(s)	121, 830, 833
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	4 cut(s)	639, 667, 697, 849
NheI	GCTAGC	2 cut(s)	67, 124
NlaIII	CATG	4 cut(s)	115, 462, 551, 590
NlaIV	GGNNCC	4 cut(s)	219, 402, 432, 577
NspI	RCATGY	1 cut(s)	462
OliI	CACNNNNGTG	1 cut(s)	186
PagI	TCATGA	1 cut(s)	547
PciI	ACATGT	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	192, 438
PflMI	CCANNNNNTGG	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	77
PkrI	GCNGC	9 cut(s)	130, 133, 164, 329, 826, 829, 832, 835, 843
PleI	GAGTC	2 cut(s)	742, 743
PpsI	GAGTC	2 cut(s)	742, 743
PpuMI	RGGWCCY	1 cut(s)	682
PscI	ACATGT	1 cut(s)	458
Psp1406I	AACGTT	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	682
Psp6I	CCWGG	3 cut(s)	96, 433, 578
PspGI	CCWGG	3 cut(s)	96, 433, 578
PspN4I	GGNNCC	4 cut(s)	219, 402, 432, 577
PspPI	GGNCC	1 cut(s)	682
PspPPI	RGGWCCY	1 cut(s)	682
RsaI	GTAC	2 cut(s)	367, 761
RsaNI	GTAC	2 cut(s)	366, 760
RseI	CAYNNNNRTG	3 cut(s)	186, 240, 722
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	9 cut(s)	129, 132, 163, 328, 825, 828, 831, 834, 842
Sau3AI	GATC	4 cut(s)	639, 667, 697, 849
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	2 cut(s)	743, 743
ScrFI	CCNGG	4 cut(s)	79, 98, 435, 580
SetI	ASST	8 cut(s)	29, 69, 126, 144, 267, 483, 657, 684
SfaNI	GCATC	2 cut(s)	265, 772
SfcI	CTRYAG	2 cut(s)	201, 279
SinI	GGWCC	1 cut(s)	682
SmiMI	CAYNNNNRTG	3 cut(s)	186, 240, 722
Sse9I	AATT	6 cut(s)	84, 152, 258, 351, 452, 520
SsiI	CCGC	3 cut(s)	48, 132, 525
SspMI	CTAG	2 cut(s)	68, 125
StyD4I	CCNGG	4 cut(s)	77, 96, 433, 578
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	4 cut(s)	10, 185, 362, 707
TaiI	ACGT	1 cut(s)	483
TasI	AATT	6 cut(s)	84, 152, 258, 351, 452, 520
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	2 cut(s)	192, 438
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	2 cut(s)	367, 568
TseI	GCWGC	8 cut(s)	128, 162, 327, 824, 827, 830, 833, 841
TspDTI	ATGAA	5 cut(s)	224, 242, 330, 519, 611
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	2 cut(s)	367, 568
Van91I	CCANNNNNTGG	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	682
XapI	RAATTY	2 cut(s)	152, 520
XceI	RCATGY	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	2 cut(s)	68, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.