Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Reverse (-)

6004574 .. 6008073

Gene Structure 3500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG077500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAACCAAGAGGCCTAGGGTACAGGTTGGGTGGTTTCGTTACGGTGGTGGTGGTGCTTGTTTCGGCATTGGTCATTAATGTTTCCGGTAACTTGGTTTTCCCGGTGAGCCATAAGTTTAATGGTAGACACGGAGCGTCGTTGAGTGAACTCAAAGCCCATGATCATCGCCGTCATGCTAGATTGCTCGGGGCCACCCAGAATGCTGTGGATATGTTTTTGGGCGGCAGCACTGAGGAAACTAGGCTCTACTTCACTAAACTTGGGATTGGGAATCCTTCACACGACTATTACTTGCAAATTGATACGGGAAGTAATCTATTTTGGGTGAGTTGCGCTGAGTGCGGCAAAGGCTGCCCTGACAGATCTGAACTCACTGGTGTAAAACTCACACTCTACGATCGAAACAGTTCTTCCACTTCAAAGGTGGTGTCTTGTGGTGATAACTTTTGCACTTCCCCATCCGTAAAATCAATCTCTGATTGCAAGCCAGACGAGAAATGCAACTACCATCTTCAATATGAAGGTAAAGATAAAACTTCCGGATACTTTGTCAAGGATGATGTGCAATTTCAGAAAGCCAGCGGGAACTTTCAAACATCCTCCACTAGTGGATCTGTAATATTCGGGTGCGGGACTGAACAATCTGGCTCGATAAATAACCCCAATGGAGCACTTTCCGGGGTAATTGGTTTTGACCAGGACAATATAACCATGCTTTCACAGCTAGCGGCCGCAGGAAGGGTGAGGAATAAATTTGCACACTGCTTGGATAACACGAAACAATCGCAAGGTGGTGGAATCTGGGCTATAGGAGAAGTCGTCGAACCCAAAATGATGCACACATCACCTATCGTACCAAATCAGACTCGTTACAATATTGTGGTGGAGAAAATTGAGGTTGGAAGTGATGCCATAGAGCTTCCTACTAGTGGTGGTGGTGTTTTGGATGAAACATCTGGCAGCAATTCAGACCAAATTATTGCATTTTTTGATAGTGGTACAACATTTGCTCATTTACCACCAAAGTTGCGTGAACCAATAGTGAAGAAGATATTCGCTACGGAGCCTGGATTGAAATTCCTAAAAGATGATTACGGCGAGTACTCATGTTTCAAATATTCCAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

377

Amino Acids

40.83

Weight (kDa)

6.79

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	84 - 272	4.9e-38	Xylanase inhibitor N-terminal
Asp	PF00026	84 - 356	1.1e-10	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	542
AciI	CCGC	6 cut(s)	225, 345, 585, 633, 731, 735
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	732
AcsI	RAATTY	2 cut(s)	755, 1079
AfaI	GTAC	4 cut(s)	23, 858, 1003, 1106
AfiI	CCNNNNNNNGG	2 cut(s)	741, 932
AgsI	TTSAA	5 cut(s)	423, 518, 596, 1078, 1117
AhlI	ACTAGT	2 cut(s)	608, 929
AjnI	CCWGG	2 cut(s)	699, 1069
AluBI	AGCT	2 cut(s)	727, 922
AluI	AGCT	2 cut(s)	727, 922
Alw21I	GWGCWC	1 cut(s)	676
AlwI	GGATC	1 cut(s)	622
Ama87I	CYCGRG	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	542
AoxI	GGCC	3 cut(s)	13, 192, 732
ApeKI	GCWGC	3 cut(s)	228, 354, 963
ApoI	RAATTY	2 cut(s)	755, 1079
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AseI	ATTAAT	1 cut(s)	78
Asp700I	GAANNNNTTC	2 cut(s)	409, 1055
AspA2I	CCTAGG	1 cut(s)	16
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	2 cut(s)	104, 682
AsuHPI	GGTGA	5 cut(s)	118, 340, 452, 757, 840
AsuNHI	GCTAGC	1 cut(s)	727
AvaI	CYCGRG	1 cut(s)	188
AvrII	CCTAGG	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	3 cut(s)	240, 341, 975
BccI	CCATC	2 cut(s)	469, 519
BceAI	ACGGC	2 cut(s)	156, 1114
BciT130I	CCWGG	2 cut(s)	701, 1071
BciVI	GTATCC	1 cut(s)	539
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	2 cut(s)	104, 682
BcuI	ACTAGT	2 cut(s)	608, 929
BfaI	CTAG	6 cut(s)	17, 180, 243, 609, 728, 930
BfmI	CTRYAG	1 cut(s)	810
BfuI	GTATCC	1 cut(s)	539
BglII	AGATCT	1 cut(s)	365
BisI	GCNGC	7 cut(s)	226, 229, 346, 355, 732, 735, 964
BlnI	CCTAGG	1 cut(s)	16
BlsI	GCNGC	7 cut(s)	227, 230, 347, 356, 733, 736, 965
BmcAI	AGTACT	1 cut(s)	1106
Bme1390I	CCNGG	4 cut(s)	104, 682, 701, 1071
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	3 cut(s)	6, 193, 1068
BmrFI	CCNGG	4 cut(s)	104, 682, 701, 1071
BmsI	GCATC	2 cut(s)	828, 901
BmtI	GCTAGC	1 cut(s)	731
BpuMI	CCSGG	2 cut(s)	104, 682
BsaJI	CCNNGG	2 cut(s)	16, 681
BsaWI	WCCGGW	2 cut(s)	86, 542
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bsc4I	CCNNNNNNNGG	2 cut(s)	741, 932
Bse1I	ACTGG	1 cut(s)	382
BseAI	TCCGGA	1 cut(s)	542
BseBI	CCWGG	2 cut(s)	701, 1071
BseDI	CCNNGG	2 cut(s)	16, 681
BseGI	GGATG	4 cut(s)	461, 565, 599, 955
BseLI	CCNNNNNNNGG	2 cut(s)	741, 932
BseMII	CTCAG	2 cut(s)	225, 330
BseNI	ACTGG	1 cut(s)	382
BseX3I	CGGCCG	1 cut(s)	732
BseXI	GCAGC	3 cut(s)	240, 341, 975
Bsh1285I	CGRYCG	2 cut(s)	403, 735
BshFI	GGCC	3 cut(s)	15, 194, 734
BsiEI	CGRYCG	2 cut(s)	403, 735
BsiHKAI	GWGCWC	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	4 cut(s)	87, 104, 543, 681
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	2 cut(s)	741, 932
BsmFI	GGGAC	1 cut(s)	649
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	15, 194, 734
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp13I	TCCGGA	1 cut(s)	542
Bsp143I	GATC	4 cut(s)	163, 365, 400, 614
BspACI	CCGC	6 cut(s)	225, 345, 585, 633, 731, 735
BspANI	GGCC	3 cut(s)	15, 194, 734
BspCNI	CTCAG	2 cut(s)	226, 331
BspEI	TCCGGA	1 cut(s)	542
BspLI	GGNNCC	3 cut(s)	6, 193, 1068
BspOI	GCTAGC	1 cut(s)	731
BspPI	GGATC	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	16, 681
BssMI	GATC	4 cut(s)	163, 365, 400, 614
BssT1I	CCWWGG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	701, 1071
Bst4CI	ACNGT	2 cut(s)	46, 410
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	488, 583, 729
BstDEI	CTNAG	2 cut(s)	234, 339
BstF5I	GGATG	4 cut(s)	461, 565, 599, 955
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	4 cut(s)	166, 368, 403, 617
BstMBI	GATC	4 cut(s)	163, 365, 400, 614
BstMCI	CGRYCG	2 cut(s)	403, 735
BstMWI	GCNNNNNNNGC	4 cut(s)	342, 351, 354, 724
BstNI	CCWGG	2 cut(s)	701, 1071
BstSCI	CCNGG	4 cut(s)	102, 680, 699, 1069
BstSFI	CTRYAG	1 cut(s)	810
BstV1I	GCAGC	3 cut(s)	240, 341, 975
BstX2I	RGATCY	2 cut(s)	365, 614
BstYI	RGATCY	2 cut(s)	365, 614
BstZI	CGGCCG	1 cut(s)	732
BsuI	GTATCC	1 cut(s)	539
BsuRI	GGCC	3 cut(s)	15, 194, 734
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	4 cut(s)	461, 565, 599, 955
BtsI	GCAGTG	1 cut(s)	763
BtsIMutI	CAGTG	3 cut(s)	231, 375, 763
Cac8I	GCNNGC	3 cut(s)	488, 583, 729
CciNI	GCGGCCGC	1 cut(s)	732
CfoI	GCGC	1 cut(s)	338
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	4 cut(s)	22, 857, 1002, 1105
CspCI	CAANNNNNGTGG	2 cut(s)	1011, 1046
CviAII	CATG	4 cut(s)	161, 176, 715, 1110
CviQI	GTAC	4 cut(s)	22, 857, 1002, 1105
DdeI	CTNAG	2 cut(s)	234, 339
DpnI	GATC	4 cut(s)	165, 367, 402, 616
DpnII	GATC	4 cut(s)	163, 365, 400, 614
EaeI	YGGCCR	1 cut(s)	732
EagI	CGGCCG	1 cut(s)	732
EclXI	CGGCCG	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	732
Eco88I	CYCGRG	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	699, 1069
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	4 cut(s)	164, 179, 718, 1113
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	4 cut(s)	160, 175, 714, 1109
FauI	CCCGC	2 cut(s)	578, 626
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	7 cut(s)	226, 229, 346, 355, 732, 735, 964
FokI	GGATG	4 cut(s)	448, 572, 586, 962
Fsp4HI	GCNGC	7 cut(s)	226, 229, 346, 355, 732, 735, 964
FspBI	CTAG	6 cut(s)	17, 180, 243, 609, 728, 930
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	7 cut(s)	226, 229, 346, 355, 732, 735, 964
HaeIII	GGCC	3 cut(s)	15, 194, 734
HapII	CCGG	4 cut(s)	87, 104, 543, 681
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	4 cut(s)	164, 179, 718, 1113
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	3 cut(s)	274, 801, 868
HpaII	CCGG	4 cut(s)	87, 104, 543, 681
HphI	GGTGA	5 cut(s)	118, 340, 452, 757, 840
Hpy166II	GTNNAC	3 cut(s)	128, 149, 1037
Hpy188I	TCNGA	5 cut(s)	370, 481, 576, 867, 973
Hpy188III	TCNNGA	1 cut(s)	543
Hpy8I	GTNNAC	3 cut(s)	128, 149, 1037
Hpy99I	CGWCG	2 cut(s)	142, 827
HpyAV	CCTTC	3 cut(s)	288, 518, 735
HpyCH4III	ACNGT	2 cut(s)	46, 410
HpyCH4V	TGCA	8 cut(s)	298, 453, 486, 504, 568, 761, 841, 986
HpyF10VI	GCNNNNNNNGC	4 cut(s)	342, 351, 354, 724
HpyF3I	CTNAG	2 cut(s)	234, 339
Hsp92II	CATG	4 cut(s)	164, 179, 718, 1113
HspAI	GCGC	1 cut(s)	336
Kpn2I	TCCGGA	1 cut(s)	542
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	163, 365, 400, 614
LmnI	GCTCC	3 cut(s)	134, 671, 1066
Lsp1109I	GCAGC	3 cut(s)	240, 341, 975
LweI	GCATC	2 cut(s)	828, 901
MaeI	CTAG	6 cut(s)	17, 180, 243, 609, 728, 930
MaeIII	GTNAC	3 cut(s)	40, 89, 872
MalI	GATC	4 cut(s)	165, 367, 402, 616
MboI	GATC	4 cut(s)	163, 365, 400, 614
MboII	GAAGA	4 cut(s)	405, 506, 1060, 1063
MflI	RGATCY	2 cut(s)	365, 614
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	8 cut(s)	300, 569, 687, 755, 894, 967, 978, 1079
MlyI	GAGTC	1 cut(s)	862
MmeI	TCCRAC	1 cut(s)	883
MnlI	CCTC	5 cut(s)	5, 229, 613, 741, 892
MroI	TCCGGA	1 cut(s)	542
MroXI	GAANNNNTTC	2 cut(s)	409, 1055
MseI	TTAA	2 cut(s)	78, 120
MspA1I	CMGCKG	1 cut(s)	585
MspI	CCGG	4 cut(s)	87, 104, 543, 681
MspR9I	CCNGG	4 cut(s)	104, 682, 701, 1071
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	2 cut(s)	701, 1071
MwoI	GCNNNNNNNGC	4 cut(s)	342, 351, 354, 724
NciI	CCSGG	2 cut(s)	104, 682
NdeII	GATC	4 cut(s)	163, 365, 400, 614
NheI	GCTAGC	1 cut(s)	727
NlaIII	CATG	4 cut(s)	164, 179, 718, 1113
NlaIV	GGNNCC	3 cut(s)	6, 193, 1068
NotI	GCGGCCGC	1 cut(s)	732
PceI	AGGCCT	1 cut(s)	15
PctI	GAATGC	1 cut(s)	208
PdmI	GAANNNNTTC	2 cut(s)	409, 1055
PfeI	GAWTC	2 cut(s)	274, 801
PkrI	GCNGC	7 cut(s)	227, 230, 347, 356, 733, 736, 965
Ple19I	CGATCG	1 cut(s)	403
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
PshBI	ATTAAT	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	699, 1069
PspGI	CCWGG	2 cut(s)	699, 1069
PspN4I	GGNNCC	3 cut(s)	6, 193, 1068
PspPI	GGNCC	1 cut(s)	192
PsuI	RGATCY	2 cut(s)	365, 614
PvuI	CGATCG	1 cut(s)	403
RsaI	GTAC	4 cut(s)	23, 858, 1003, 1106
RsaNI	GTAC	4 cut(s)	22, 857, 1002, 1105
SaqAI	TTAA	2 cut(s)	78, 120
SatI	GCNGC	7 cut(s)	226, 229, 346, 355, 732, 735, 964
Sau3AI	GATC	4 cut(s)	163, 365, 400, 614
Sau96I	GGNCC	1 cut(s)	192
ScaI	AGTACT	1 cut(s)	1106
SchI	GAGTC	1 cut(s)	862
ScrFI	CCNGG	4 cut(s)	104, 682, 701, 1071
SduI	GDGCHC	1 cut(s)	676
SetI	ASST	8 cut(s)	29, 429, 529, 729, 796, 853, 903, 924
SfaNI	GCATC	2 cut(s)	828, 901
SfcI	CTRYAG	1 cut(s)	810
SpeI	ACTAGT	2 cut(s)	608, 929
Sse9I	AATT	8 cut(s)	300, 569, 687, 755, 894, 967, 978, 1079
SseBI	AGGCCT	1 cut(s)	15
SsiI	CCGC	6 cut(s)	225, 345, 585, 633, 731, 735
SspI	AATATT	3 cut(s)	624, 880, 1121
SspMI	CTAG	6 cut(s)	17, 180, 243, 609, 728, 930
StuI	AGGCCT	1 cut(s)	15
StyD4I	CCNGG	4 cut(s)	102, 680, 699, 1069
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	46, 410
TaqI	TCGA	3 cut(s)	403, 653, 825
TasI	AATT	8 cut(s)	300, 569, 687, 755, 894, 967, 978, 1079
TatI	WGTACW	1 cut(s)	1104
TauI	GCSGC	4 cut(s)	228, 348, 734, 737
TfiI	GAWTC	2 cut(s)	274, 801
Tru1I	TTAA	2 cut(s)	78, 120
Tru9I	TTAA	2 cut(s)	78, 120
TscAI	CASTG	3 cut(s)	238, 382, 770
TseI	GCWGC	3 cut(s)	228, 354, 963
TspDTI	ATGAA	2 cut(s)	537, 966
TspGWI	ACGGA	3 cut(s)	147, 454, 1079
TspRI	CASTG	3 cut(s)	238, 382, 770
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	2 cut(s)	755, 1079
XcmI	CCANNNNNNNNNTGG	2 cut(s)	119, 424
XmaJI	CCTAGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	127
XmnI	GAANNNNTTC	2 cut(s)	409, 1055
XspI	CTAG	6 cut(s)	17, 180, 243, 609, 728, 930
ZrmI	AGTACT	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.