Rw5G024160

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
34336682 .. 34340569
3888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G024160.1

Sequence Viewer

Length: 1434 bp
ATGGAACCAAGAGGCCTAGGGGACAGGTTGGGTGGTTTCGTTGCGGTGGTGGTGGTGCTTGTTTCGGCATTGGTCGTTAATGTTTCCGGTAACTTGGTTTTCCCGGTGAGCCATAAGTTTAATGGTAGAGAGGGAGCGTCTTTGAGTGAACTTAAAGCCCATGATCGTCACCGTCACGCTAGATTTCTCGGGGCCACCCAGAATGCTGTGGATATGGCTTTGGGCGGTAGCACTGACCAAACTGGGCTCTACTTCACTAAACTTGGGATTGGGAATCCTTCACACGACTATTACTTGCAAGTTGATACCGGAAGTAACCTATTCTGGGTGAGTTGCGCTGAGTGCGGCAAAGGCTGCCCTGACAGATCTGAACTCATTGGTGTGGTATCTTGTGGTGATGACTTTTGCACTTCCCCATCCGTAAAATATATCTCCGACTGCAAGCCAGATGAGAAATGCAACTACCATCTTCAATATGTAGGTAAAGATAAAACTTCCGGATACTTTGTCAAGGACGATGTGCAATTTCAGAAAGTGAGCGGGAACTTTCAAACATCCTCCACTAGTGGATCTGTAATATTCGGGTGCGGGACTCAACAATCTGGCGTGATGAATGACCCTAAAGCAGCAATTTCCGGGTTAATTGGTTTTGACCGGGACAATATAACCATGCTTTCACAGCTAGCAGCCGCAGGAAAGGTGAGGAATAAATTTGCACACTGCTTGGATAGCACGAAACAAGGTGGTGGAATCTGGGCTATAGGTGAAGTCGTCGAACCCAAAATGATGCACACATCACCTATGGTACCAAATCAGACTCGTTACAATATTGTGGTGGAGAAAATTGAAGTTGGAAGTGATGCCATAGAACTTCCTACTAGTGGTGGTGGTGATTTGGATGAAACATCTGGCAGCAGTCCAGACCAAATTATTGCATTTTTTGACACTGGTACAACATTGGCTCATTTACCTCCAAAGTTGCATGAACCAATAGTGAAGAAGATATTGGCTACAGACCCTGGATTGAAATTCCAAAAAAATGATGACGGCGAGTACTCATGTTTCGAGTATTCCAAAAACGTTGATGAAAAGTTTCCTATTGTCAAGTTCACTTTCAAGAATTCCGCTTCATTGTGGGTGTATCCTCATGATTATTTGTTCGGTAATGTGAAAGAGGGTGCCTGGTGTCATGGTTGGATGAAATTAACTGGGGAAGACGGAGACCTCGACATTATTCTGGGAGATATGACGCTTTCGAATAAGTTAGTCGTACACGATCTAGAAAACCAGGTCCTTGGGTGGGCTGATCACAACTGTTCTTCAAGCATAAAAGTGAAAGATGACGAGTCGGGGTCACACTACTCTGTTCAGTACCACCATCTTGCTTTTTCTGATGCTTCCAGCCCAAGACTACTGATGTCATTCTGGCAATGA

Protein Analysis

477

Amino Acids

52.0

Weight (kDa)

5.55

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 255 9.8e-35 Xylanase inhibitor N-terminal
Asp PF00026 84 - 435 9.1e-21 Eukaryotic aspartyl protease
TAXi_C PF14541 275 - 435 1.8e-13 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 805
AccB1I GGYRCC 2 cut(s) 805, 1178
AccBSI CCGCTC 1 cut(s) 540
AccIII TCCGGA 1 cut(s) 497
AciI CCGC 7 cut(s) 44, 225, 345, 540, 588, 690, 1125
AclI AACGTT 1 cut(s) 1080
AclWI GGATC 1 cut(s) 577
AcsI RAATTY 3 cut(s) 710, 1028, 1120
AfaI GTAC 5 cut(s) 807, 952, 1055, 1272, 1373
AfiI CCNNNNNNNGG 3 cut(s) 325, 881, 1300
AgsI TTSAA 6 cut(s) 473, 551, 848, 1027, 1117, 1323
AhlI ACTAGT 2 cut(s) 563, 878
AjnI CCWGG 3 cut(s) 1018, 1181, 1287
AjuI GAANNNNNNNTTGG 2 cut(s) 989, 1021
AluBI AGCT 1 cut(s) 682
AluI AGCT 1 cut(s) 682
Alw26I GTCTC 1 cut(s) 1215
AlwI GGATC 1 cut(s) 577
AlwNI CAGNNNCTG 1 cut(s) 1019
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 497
AoxI GGCC 2 cut(s) 13, 192
ApeKI GCWGC 4 cut(s) 354, 626, 686, 912
ApoI RAATTY 3 cut(s) 710, 1028, 1120
Asp700I GAANNNNTTC 1 cut(s) 1092
Asp718I GGTACC 1 cut(s) 805
AspA2I CCTAGG 1 cut(s) 16
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 192, 1291
AsuC2I CCSGG 3 cut(s) 104, 637, 656
AsuHPI GGTGA 8 cut(s) 118, 161, 340, 407, 712, 776, 789, 902
AsuII TTCGAA 1 cut(s) 1256
AsuNHI GCTAGC 1 cut(s) 682
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 1291
AvrII CCTAGG 1 cut(s) 16
BanI GGYRCC 2 cut(s) 805, 1178
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 1221
BbvI GCAGC 4 cut(s) 341, 638, 698, 924
BccI CCATC 3 cut(s) 424, 474, 1386
BceAI ACGGC 1 cut(s) 1063
BciT130I CCWGG 3 cut(s) 1020, 1183, 1289
BciVI GTATCC 2 cut(s) 494, 1152
BclI TGATCA 1 cut(s) 1306
BcnI CCSGG 3 cut(s) 104, 637, 656
BcoDI GTCTC 1 cut(s) 1215
BcuI ACTAGT 2 cut(s) 563, 878
BfaI CTAG 6 cut(s) 17, 180, 564, 683, 879, 1280
BfmI CTRYAG 2 cut(s) 759, 1011
BfuI GTATCC 2 cut(s) 494, 1152
BglII AGATCT 1 cut(s) 365
BisI GCNGC 6 cut(s) 346, 355, 627, 687, 690, 913
BlnI CCTAGG 1 cut(s) 16
BlsI GCNGC 6 cut(s) 347, 356, 628, 688, 691, 914
BmcAI AGTACT 1 cut(s) 1055
Bme1390I CCNGG 6 cut(s) 104, 637, 656, 1020, 1183, 1289
Bme18I GGWCC 1 cut(s) 1291
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 192, 1291
BmiI GGNNCC 4 cut(s) 6, 193, 807, 1180
BmrFI CCNGG 6 cut(s) 104, 637, 656, 1020, 1183, 1289
BmrI ACTGGG 2 cut(s) 252, 1218
BmsI GCATC 3 cut(s) 777, 850, 1384
BmtI GCTAGC 1 cut(s) 686
BmuI ACTGGG 2 cut(s) 252, 1218
BpiI GAAGAC 1 cut(s) 1221
Bpu14I TTCGAA 1 cut(s) 1256
BpuMI CCSGG 3 cut(s) 104, 637, 656
BsaI GGTCTC 1 cut(s) 1215
BsaJI CCNNGG 3 cut(s) 16, 1018, 1294
BsaWI WCCGGW 3 cut(s) 86, 308, 497
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 881, 1300
Bse1I ACTGG 3 cut(s) 247, 952, 1213
BseAI TCCGGA 1 cut(s) 497
BseBI CCWGG 3 cut(s) 1020, 1183, 1289
BseDI CCNNGG 3 cut(s) 16, 1018, 1294
BseGI GGATG 4 cut(s) 416, 554, 904, 1203
BseLI CCNNNNNNNGG 3 cut(s) 325, 881, 1300
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 3 cut(s) 247, 952, 1213
BseXI GCAGC 4 cut(s) 341, 638, 698, 924
BshFI GGCC 2 cut(s) 15, 194
BshNI GGYRCC 2 cut(s) 805, 1178
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 6 cut(s) 87, 104, 309, 498, 636, 655
BslFI GGGAC 3 cut(s) 35, 604, 671
BslI CCNNNNNNNGG 3 cut(s) 325, 881, 1300
BsmAI GTCTC 1 cut(s) 1215
BsmFI GGGAC 3 cut(s) 35, 604, 671
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 15, 194
Bso31I GGTCTC 1 cut(s) 1215
BsoBI CYCGRG 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 1256
Bsp1286I GDGCHC 1 cut(s) 249
Bsp13I TCCGGA 1 cut(s) 497
Bsp143I GATC 5 cut(s) 163, 365, 569, 1276, 1306
BspACI CCGC 7 cut(s) 44, 225, 345, 540, 588, 690, 1125
BspANI GGCC 2 cut(s) 15, 194
BspCNI CTCAG 1 cut(s) 331
BspEI TCCGGA 1 cut(s) 497
BspHI TCATGA 1 cut(s) 1147
BspLI GGNNCC 4 cut(s) 6, 193, 807, 1180
BspOI GCTAGC 1 cut(s) 686
BspPI GGATC 1 cut(s) 577
BspT104I TTCGAA 1 cut(s) 1256
BspT107I GGYRCC 2 cut(s) 805, 1178
BspTNI GGTCTC 1 cut(s) 1215
BsrBI CCGCTC 1 cut(s) 540
BsrI ACTGG 3 cut(s) 247, 952, 1213
BssECI CCNNGG 3 cut(s) 16, 1018, 1294
BssMI GATC 5 cut(s) 163, 365, 569, 1276, 1306
BssT1I CCWWGG 2 cut(s) 16, 1294
Bst2UI CCWGG 3 cut(s) 1020, 1183, 1289
Bst4CI ACNGT 2 cut(s) 173, 1316
BstAPI GCANNNNNTGC 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 1256
BstC8I GCNNGC 2 cut(s) 443, 684
BstDEI CTNAG 1 cut(s) 339
BstF5I GGATG 4 cut(s) 416, 554, 904, 1203
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 5 cut(s) 166, 368, 572, 1279, 1309
BstMAI GTCTC 1 cut(s) 1215
BstMBI GATC 5 cut(s) 163, 365, 569, 1276, 1306
BstMWI GCNNNNNNNGC 5 cut(s) 342, 351, 354, 679, 729
BstNI CCWGG 3 cut(s) 1020, 1183, 1289
BstSCI CCNGG 6 cut(s) 102, 635, 654, 1018, 1181, 1287
BstSFI CTRYAG 2 cut(s) 759, 1011
BstV1I GCAGC 4 cut(s) 341, 638, 698, 924
BstV2I GAAGAC 1 cut(s) 1221
BstX2I RGATCY 2 cut(s) 365, 569
BstXI CCANNNNNNTGG 1 cut(s) 1295
BstYI RGATCY 2 cut(s) 365, 569
BsuI GTATCC 2 cut(s) 494, 1152
BsuRI GGCC 2 cut(s) 15, 194
BtsCI GGATG 4 cut(s) 416, 554, 904, 1203
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 3 cut(s) 231, 718, 945
Cac8I GCNNGC 2 cut(s) 443, 684
CaiI CAGNNNCTG 1 cut(s) 1019
CciI TCATGA 1 cut(s) 1147
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 192, 1291
CseI GACGC 2 cut(s) 126, 1258
CsiI ACCWGGT 1 cut(s) 1287
Csp6I GTAC 5 cut(s) 806, 951, 1054, 1271, 1372
CviAII CATG 6 cut(s) 161, 670, 983, 1059, 1148, 1190
CviQI GTAC 5 cut(s) 806, 951, 1054, 1271, 1372
DdeI CTNAG 1 cut(s) 339
DpnI GATC 5 cut(s) 165, 367, 571, 1278, 1308
DpnII GATC 5 cut(s) 163, 365, 569, 1276, 1306
Eco130I CCWWGG 2 cut(s) 16, 1294
Eco147I AGGCCT 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 1215
Eco47I GGWCC 1 cut(s) 1291
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 1291
EcoRI GAATTC 1 cut(s) 1120
EcoRII CCWGG 3 cut(s) 1018, 1181, 1287
EcoT14I CCWWGG 2 cut(s) 16, 1294
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 2 cut(s) 16, 1294
FaeI CATG 6 cut(s) 164, 673, 986, 1062, 1151, 1193
FaqI GGGAC 3 cut(s) 35, 604, 671
FatI CATG 6 cut(s) 160, 669, 982, 1058, 1147, 1189
FauI CCCGC 2 cut(s) 533, 581
FbaI TGATCA 1 cut(s) 1306
Fnu4HI GCNGC 6 cut(s) 346, 355, 627, 687, 690, 913
FokI GGATG 4 cut(s) 403, 541, 911, 1210
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 6 cut(s) 346, 355, 627, 687, 690, 913
FspBI CTAG 6 cut(s) 17, 180, 564, 683, 879, 1280
GlaI GCGC 1 cut(s) 337
GluI GCNGC 6 cut(s) 346, 355, 627, 687, 690, 913
HaeIII GGCC 2 cut(s) 15, 194
HapII CCGG 6 cut(s) 87, 104, 309, 498, 636, 655
HgaI GACGC 2 cut(s) 126, 1258
HhaI GCGC 1 cut(s) 338
Hin1II CATG 6 cut(s) 164, 673, 986, 1062, 1151, 1193
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 5 cut(s) 274, 592, 750, 817, 1346
HpaII CCGG 6 cut(s) 87, 104, 309, 498, 636, 655
HphI GGTGA 8 cut(s) 118, 161, 340, 407, 712, 776, 789, 902
Hpy166II GTNNAC 3 cut(s) 149, 1110, 1273
Hpy188I TCNGA 5 cut(s) 370, 436, 531, 816, 1393
Hpy188III TCNNGA 5 cut(s) 498, 920, 1117, 1148, 1280
Hpy8I GTNNAC 3 cut(s) 149, 1110, 1273
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 2 cut(s) 173, 1316
HpyCH4IV ACGT 1 cut(s) 1080
HpyCH4V TGCA 9 cut(s) 298, 408, 441, 459, 523, 716, 790, 935, 982
HpyF10VI GCNNNNNNNGC 5 cut(s) 342, 351, 354, 679, 729
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 1080
Hsp92II CATG 6 cut(s) 164, 673, 986, 1062, 1151, 1193
HspAI GCGC 1 cut(s) 336
Kpn2I TCCGGA 1 cut(s) 497
KpnI GGTACC 1 cut(s) 809
Ksp22I TGATCA 1 cut(s) 1306
Kzo9I GATC 5 cut(s) 163, 365, 569, 1276, 1306
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 4 cut(s) 341, 638, 698, 924
LweI GCATC 3 cut(s) 777, 850, 1384
MabI ACCWGGT 1 cut(s) 1287
MaeI CTAG 6 cut(s) 17, 180, 564, 683, 879, 1280
MaeII ACGT 1 cut(s) 1080
MaeIII GTNAC 6 cut(s) 89, 167, 173, 314, 821, 1353
MalI GATC 5 cut(s) 165, 367, 571, 1278, 1308
MbiI CCGCTC 1 cut(s) 540
MboI GATC 5 cut(s) 163, 365, 569, 1276, 1306
MboII GAAGA 5 cut(s) 461, 1009, 1012, 1226, 1311
MflI RGATCY 2 cut(s) 365, 569
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 9 cut(s) 524, 630, 642, 710, 843, 927, 1028, 1120, 1202
MlyI GAGTC 3 cut(s) 586, 811, 1355
MmeI TCCRAC 3 cut(s) 459, 832, 1175
MnlI CCTC 8 cut(s) 5, 124, 568, 696, 981, 1155, 1168, 1235
MroI TCCGGA 1 cut(s) 497
MroXI GAANNNNTTC 1 cut(s) 1092
MseI TTAA 5 cut(s) 78, 120, 153, 641, 1205
MslI CAYNNNNRTG 2 cut(s) 380, 1331
MspI CCGG 6 cut(s) 87, 104, 309, 498, 636, 655
MspR9I CCNGG 6 cut(s) 104, 637, 656, 1020, 1183, 1289
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 3 cut(s) 1020, 1183, 1289
MwoI GCNNNNNNNGC 5 cut(s) 342, 351, 354, 679, 729
NciI CCSGG 3 cut(s) 104, 637, 656
NdeII GATC 5 cut(s) 163, 365, 569, 1276, 1306
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 6 cut(s) 164, 673, 986, 1062, 1151, 1193
NlaIV GGNNCC 4 cut(s) 6, 193, 807, 1180
NmuCI GTSAC 3 cut(s) 167, 173, 1353
NspV TTCGAA 1 cut(s) 1256
PagI TCATGA 1 cut(s) 1147
PceI AGGCCT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 1224
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 1092
PfeI GAWTC 2 cut(s) 274, 750
PkrI GCNGC 6 cut(s) 347, 356, 628, 688, 691, 914
PleI GAGTC 3 cut(s) 586, 811, 1354
PpsI GAGTC 3 cut(s) 586, 811, 1354
PpuMI RGGWCCY 1 cut(s) 1291
Psp1406I AACGTT 1 cut(s) 1080
Psp5II RGGWCCY 1 cut(s) 1291
Psp6I CCWGG 3 cut(s) 1018, 1181, 1287
PspGI CCWGG 3 cut(s) 1018, 1181, 1287
PspN4I GGNNCC 4 cut(s) 6, 193, 807, 1180
PspPI GGNCC 2 cut(s) 192, 1291
PspPPI RGGWCCY 1 cut(s) 1291
PstNI CAGNNNCTG 1 cut(s) 1019
PsuI RGATCY 2 cut(s) 365, 569
RsaI GTAC 5 cut(s) 807, 952, 1055, 1272, 1373
RsaNI GTAC 5 cut(s) 806, 951, 1054, 1271, 1372
RseI CAYNNNNRTG 2 cut(s) 380, 1331
SaqAI TTAA 5 cut(s) 78, 120, 153, 641, 1205
SatI GCNGC 6 cut(s) 346, 355, 627, 687, 690, 913
Sau3AI GATC 5 cut(s) 163, 365, 569, 1276, 1306
Sau96I GGNCC 2 cut(s) 192, 1291
ScaI AGTACT 1 cut(s) 1055
SchI GAGTC 3 cut(s) 586, 811, 1355
ScrFI CCNGG 6 cut(s) 104, 637, 656, 1020, 1183, 1289
SduI GDGCHC 1 cut(s) 249
SexAI ACCWGGT 1 cut(s) 1287
SfaNI GCATC 3 cut(s) 777, 850, 1384
SfcI CTRYAG 2 cut(s) 759, 1011
SfuI TTCGAA 1 cut(s) 1256
SinI GGWCC 1 cut(s) 1291
SmiMI CAYNNNNRTG 2 cut(s) 380, 1331
SpeI ACTAGT 2 cut(s) 563, 878
Sse9I AATT 9 cut(s) 524, 630, 642, 710, 843, 927, 1028, 1120, 1202
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 7 cut(s) 44, 225, 345, 540, 588, 690, 1125
SspI AATATT 2 cut(s) 579, 829
SspMI CTAG 6 cut(s) 17, 180, 564, 683, 879, 1280
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 6 cut(s) 102, 635, 654, 1018, 1181, 1287
StyI CCWWGG 2 cut(s) 16, 1294
TaaI ACNGT 2 cut(s) 173, 1316
TaiI ACGT 1 cut(s) 1083
TaqI TCGA 4 cut(s) 774, 1065, 1227, 1256
TasI AATT 9 cut(s) 524, 630, 642, 710, 843, 927, 1028, 1120, 1202
TatI WGTACW 1 cut(s) 1053
TauI GCSGC 2 cut(s) 348, 692
TfiI GAWTC 2 cut(s) 274, 750
Tru1I TTAA 5 cut(s) 78, 120, 153, 641, 1205
Tru9I TTAA 5 cut(s) 78, 120, 153, 641, 1205
TscAI CASTG 3 cut(s) 238, 725, 952
TseFI GTSAC 3 cut(s) 167, 173, 1353
TseI GCWGC 4 cut(s) 354, 626, 686, 912
Tsp45I GTSAC 3 cut(s) 167, 173, 1353
TspDTI ATGAA 6 cut(s) 626, 915, 999, 1101, 1119, 1214
TspGWI ACGGA 2 cut(s) 409, 1233
TspRI CASTG 3 cut(s) 238, 725, 952
VpaK11BI GGWCC 1 cut(s) 1291
XapI RAATTY 3 cut(s) 710, 1028, 1120
XbaI TCTAGA 1 cut(s) 1279
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XmaJI CCTAGG 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 1092
XspI CTAG 6 cut(s) 17, 180, 564, 683, 879, 1280
ZrmI AGTACT 1 cut(s) 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.