Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Forward (+)

41323577 .. 41324167

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG276600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGATCCTGGACCAACATCAAGATCGGTTCTTTTCGGATTTCTTCTACTTGTCTCTTTGATTCTACATGTTTCCGGCAACTTGGTCTTCCTGGCGAGTCACAAGTTCCAGGGCCGCCGCCGGCAGTGGTCACTTAGTGAGTTAAAAGCCCACGACGCTCGGCGCCACGGCCGGAACCTCCTCTCTGTTTCTTCATCAGCTGTGGATCTGGAGTTGGGCGGCAACGGCCACCCTTCAGAGACCGGTCTCTACTTCGCCAAGCTCGGAATCGGATCCCCGTCGAAGGACTACTACGTGCAAGTCGACACCGGCAGCAACATTTTGTGGGTCAATTGCATTGAGTGCGCCAATTGCCCCCAGAAAAGCGACATTGGAGTCAAGCTCACATTGTATGATCCAAAGGACTCTTCCACTTCCCAATCCATCACTTGTGATCAGGACTTTTGCACTTCGCAATACGATGGTCAGTTGCCGGGTTGTAAATCGGAGTTGCTGTGTCAATATAATGTGGTCTATGGGGATGGGAGCTCGACTGCAGGGTACTTTGTGAAGGATGTGATTGAGTTTGATAAGGTTAGTGGGAGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

196

Amino Acids

21.43

Weight (kDa)

6.28

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	84 - 193	8.5e-22	Xylanase inhibitor N-terminal
Asp	PF00026	84 - 191	1.5e-09	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	3 cut(s)	115, 118, 219
AclWI	GGATC	5 cut(s)	12, 213, 267, 280, 389
AcoI	YGGCCR	2 cut(s)	169, 226
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	67
AgeI	ACCGGT	1 cut(s)	242
AjnI	CCWGG	3 cut(s)	7, 90, 108
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
AluBI	AGCT	4 cut(s)	200, 262, 382, 528
AluI	AGCT	4 cut(s)	200, 262, 382, 528
Alw21I	GWGCWC	1 cut(s)	530
Alw26I	GTCTC	3 cut(s)	58, 233, 251
AlwI	GGATC	5 cut(s)	12, 213, 267, 280, 389
AoxI	GGCC	3 cut(s)	112, 169, 226
ApeKI	GCWGC	1 cut(s)	312
AsiGI	ACCGGT	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	165, 347
AspS9I	GGNCC	2 cut(s)	11, 112
AsuC2I	CCSGG	1 cut(s)	474
AvaII	GGWCC	1 cut(s)	11
BamHI	GGATCC	2 cut(s)	4, 272
BanI	GGYRCC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	530
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	530
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	3 cut(s)	431, 455, 515
BceAI	ACGGC	2 cut(s)	184, 241
BciT130I	CCWGG	3 cut(s)	9, 92, 110
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	3 cut(s)	58, 233, 251
BfmI	CTRYAG	1 cut(s)	534
BfoI	RGCGCY	1 cut(s)	166
BisI	GCNGC	4 cut(s)	115, 118, 220, 313
BlsI	GCNGC	4 cut(s)	116, 119, 221, 314
Bme1390I	CCNGG	4 cut(s)	9, 92, 110, 474
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	11, 112
BmiI	GGNNCC	4 cut(s)	6, 164, 176, 274
BmrFI	CCNGG	4 cut(s)	9, 92, 110, 474
BpiI	GAAGAC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	366, 398
BpmI	CTGGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	474
BsaAI	YACGTR	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	163
BsaI	GGTCTC	2 cut(s)	233, 251
BsaJI	CCNNGG	2 cut(s)	109, 166
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	3 cut(s)	120, 242, 308
BseBI	CCWGG	3 cut(s)	9, 92, 110
BseDI	CCNNGG	2 cut(s)	109, 166
BseGI	GGATG	2 cut(s)	526, 559
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	3 cut(s)	114, 171, 228
BshNI	GGYRCC	1 cut(s)	162
BshTI	ACCGGT	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	530
BsiSI	CCGG	6 cut(s)	75, 121, 172, 243, 309, 473
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	3 cut(s)	58, 233, 251
BsnI	GGCC	3 cut(s)	114, 171, 228
Bso31I	GGTCTC	2 cut(s)	233, 251
Bsp1286I	GDGCHC	1 cut(s)	530
Bsp143I	GATC	6 cut(s)	4, 23, 205, 272, 394, 433
BspACI	CCGC	3 cut(s)	115, 118, 219
BspANI	GGCC	3 cut(s)	114, 171, 228
BspLI	GGNNCC	4 cut(s)	6, 164, 176, 274
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	5 cut(s)	12, 213, 267, 280, 389
BspT107I	GGYRCC	1 cut(s)	162
BspTNI	GGTCTC	2 cut(s)	233, 251
BsrFI	RCCGGY	3 cut(s)	120, 242, 308
BssAI	RCCGGY	3 cut(s)	120, 242, 308
BssECI	CCNNGG	2 cut(s)	109, 166
BssMI	GATC	6 cut(s)	4, 23, 205, 272, 394, 433
BssNI	GRCGYC	1 cut(s)	163
Bst2UI	CCWGG	3 cut(s)	9, 92, 110
Bst6I	CTCTTC	1 cut(s)	412
BstACI	GRCGYC	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	526, 559
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	2 cut(s)	165, 347
BstKTI	GATC	6 cut(s)	7, 26, 208, 275, 397, 436
BstMAI	GTCTC	3 cut(s)	58, 233, 251
BstMBI	GATC	6 cut(s)	4, 23, 205, 272, 394, 433
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 225, 342, 351
BstNI	CCWGG	3 cut(s)	9, 92, 110
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	4 cut(s)	7, 90, 108, 472
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	3 cut(s)	4, 205, 272
BstYI	RGATCY	3 cut(s)	4, 205, 272
BstZI	CGGCCG	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	114, 171, 228
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	526, 559
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	122
CfoI	GCGC	2 cut(s)	165, 347
Cfr10I	RCCGGY	3 cut(s)	120, 242, 308
Cfr13I	GGNCC	2 cut(s)	11, 112
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	541
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	8 cut(s)	114, 149, 171, 200, 228, 262, 382, 528
CviKI_1	RGCY	8 cut(s)	114, 149, 171, 200, 228, 262, 382, 528
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	1 cut(s)	134
DinI	GGCGCC	1 cut(s)	164
DpnI	GATC	6 cut(s)	6, 25, 207, 274, 396, 435
DpnII	GATC	6 cut(s)	4, 23, 205, 272, 394, 433
DraIII	CACNNNGTG	1 cut(s)	137
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
EaeI	YGGCCR	2 cut(s)	169, 226
EagI	CGGCCG	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
Ecl136II	GAGCTC	1 cut(s)	528
EclXI	CGGCCG	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	530
Eco31I	GGTCTC	2 cut(s)	233, 251
Eco47I	GGWCC	1 cut(s)	11
Eco52I	CGGCCG	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	528
EcoRII	CCWGG	3 cut(s)	7, 90, 108
EcoT38I	GRGCYC	1 cut(s)	530
EgeI	GGCGCC	1 cut(s)	164
EheI	GGCGCC	1 cut(s)	164
FaeI	CATG	1 cut(s)	71
FaiI	YATR	4 cut(s)	69, 393, 504, 516
FatI	CATG	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	4 cut(s)	115, 118, 220, 313
FokI	GGATG	2 cut(s)	533, 566
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	4 cut(s)	115, 118, 220, 313
GlaI	GCGC	2 cut(s)	164, 346
GluI	GCNGC	4 cut(s)	115, 118, 220, 313
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	3 cut(s)	114, 171, 228
HapII	CCGG	6 cut(s)	75, 121, 172, 243, 309, 473
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	2 cut(s)	165, 347
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	2 cut(s)	163, 345
HinP1I	GCGC	2 cut(s)	163, 345
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	5 cut(s)	61, 97, 267, 375, 404
HpaII	CCGG	6 cut(s)	75, 121, 172, 243, 309, 473
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	5 cut(s)	38, 238, 266, 272, 487
Hpy188III	TCNNGA	3 cut(s)	21, 209, 437
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	2 cut(s)	158, 283
HpyAV	CCTTC	3 cut(s)	243, 277, 544
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	298, 336, 447, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 225, 342, 351
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	2 cut(s)	163, 345
KasI	GGCGCC	1 cut(s)	162
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	6 cut(s)	4, 23, 205, 272, 394, 433
LmnI	GCTCC	1 cut(s)	525
Lsp1109I	GCAGC	1 cut(s)	324
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	98, 129
MalI	GATC	6 cut(s)	6, 25, 207, 274, 396, 435
MboI	GATC	6 cut(s)	4, 23, 205, 272, 394, 433
MboII	GAAGA	4 cut(s)	35, 79, 183, 399
MfeI	CAATTG	2 cut(s)	331, 349
MflI	RGATCY	3 cut(s)	4, 205, 272
MhlI	GDGCHC	1 cut(s)	530
MluCI	AATT	2 cut(s)	331, 349
Mly113I	GGCGCC	1 cut(s)	163
MlyI	GAGTC	3 cut(s)	106, 384, 398
MnlI	CCTC	3 cut(s)	188, 191, 576
MroNI	GCCGGC	1 cut(s)	120
MseI	TTAA	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	6 cut(s)	75, 121, 172, 243, 309, 473
MspR9I	CCNGG	4 cut(s)	9, 92, 110, 474
MunI	CAATTG	2 cut(s)	331, 349
MvaI	CCWGG	3 cut(s)	9, 92, 110
MwoI	GCNNNNNNNGC	4 cut(s)	155, 225, 342, 351
NaeI	GCCGGC	1 cut(s)	122
NarI	GGCGCC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	6 cut(s)	4, 23, 205, 272, 394, 433
NgoMIV	GCCGGC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	4 cut(s)	6, 164, 176, 274
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	2 cut(s)	98, 129
NspI	RCATGY	1 cut(s)	71
PciI	ACATGT	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	61, 267
PfoI	TCCNGGA	1 cut(s)	7
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	4 cut(s)	116, 119, 221, 314
PleI	GAGTC	3 cut(s)	105, 383, 398
PluTI	GGCGCC	1 cut(s)	166
PpsI	GAGTC	3 cut(s)	105, 383, 398
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	530
Psp6I	CCWGG	3 cut(s)	7, 90, 108
PspGI	CCWGG	3 cut(s)	7, 90, 108
PspN4I	GGNNCC	4 cut(s)	6, 164, 176, 274
PspPI	GGNCC	2 cut(s)	11, 112
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	3 cut(s)	4, 205, 272
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
SacI	GAGCTC	1 cut(s)	530
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	4 cut(s)	115, 118, 220, 313
Sau3AI	GATC	6 cut(s)	4, 23, 205, 272, 394, 433
Sau96I	GGNCC	2 cut(s)	11, 112
SchI	GAGTC	3 cut(s)	106, 384, 398
ScrFI	CCNGG	4 cut(s)	9, 92, 110, 474
SduI	GDGCHC	1 cut(s)	530
SetI	ASST	7 cut(s)	180, 202, 264, 297, 384, 530, 576
SfcI	CTRYAG	1 cut(s)	534
SfoI	GGCGCC	1 cut(s)	164
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	2 cut(s)	331, 349
SsiI	CCGC	3 cut(s)	115, 118, 219
SspDI	GGCGCC	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	530
StyD4I	CCNGG	4 cut(s)	7, 90, 108, 472
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	3 cut(s)	281, 303, 530
TasI	AATT	2 cut(s)	331, 349
TauI	GCSGC	3 cut(s)	117, 120, 222
TfiI	GAWTC	2 cut(s)	61, 267
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	98, 129
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	2 cut(s)	98, 129
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	11
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.