Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Reverse (-)

80057191 .. 80058269

Gene Structure 1079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53302

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCATCGAATTCCATCAGGGTTCTGTATATGGATCCTGGACCAACATCAAGATCGGTTCTTTTCAGATTTCTTCTACTTGTCTCTTTGATTCTACATGTTTCCGGCAACTTGGTTTTCCTAGCGAGTCACAAGTTCCAGGGCCGCCGCCGGCAGTGGTCACTTCGTAAGTTAAAAGCCCACGACGCTAGCCGCCACGGACGGAACCTCCTATCTGTTTCTTCATCAGCTGTGGATCTGGAGTTGGGCGGCAACGGCCACCCTTCCGAGACCGATCTCTACTTCGCCAAGCTCGGAATCGGATCCCAGTCGAAGGACTACTACGTGCAAGTCGACACCGGCAACGACATTTTCGACATTGGAATCAAGCTCACATTGTATGATCCAAAGGACTCTTCCACTTCCCAATCCATCACTTGTGATCAGGACTTTTGCACTTCGCAATACGATGGTCAGTTGCCGGGTTGTAAACCGGAGTTGCTGTGTCAATATAATGTGGTCTATGGGGATGGGAGCTCGACTGCAGGGTACTTTGTGAAGGATGTGATTGGGTTTGATAAGCTGGCTGCAGCTGGGAAGGTGAAGAAGCAGTTTGCGCATTGTTTGGACAATGTGAATGGGGGTGGCATTTTCACAATTGGGAAAGTTGTGGAGACGAAATTGAAGCTGAACATGACTCCATTGGTGGCCAAAAGTGCGCATTACAATGTGGCCATGGAGGCAATTGAGGTGGGTGGTGATGTTGTAGACCTGCCTTCGGATACATTTGACAGTGGAGACATGGCAGTGGTGGTGGTCATGAGCAGAAGGGCTTGGGATTTAAGACGCAAAACCAACGAAGTGAAGAGAGAGAGAGAGAGACCGTTTTACCCCTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

293

Amino Acids

32.32

Weight (kDa)

8.48

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	94 - 185	4.6e-12	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	597, 699
Acc36I	ACCTGC	1 cut(s)	759
AccI	GTMKAC	2 cut(s)	333, 747
AciI	CCGC	4 cut(s)	145, 148, 193, 249
AclWI	GGATC	6 cut(s)	29, 42, 243, 297, 310, 377
AcoI	YGGCCR	3 cut(s)	256, 687, 711
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	313, 757
AflIII	ACRYGT	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	664
AjnI	CCWGG	2 cut(s)	37, 138
AjuI	GAANNNNNNNTTGG	2 cut(s)	379, 411
AluBI	AGCT	7 cut(s)	230, 292, 370, 516, 562, 572, 667
AluI	AGCT	7 cut(s)	230, 292, 370, 516, 562, 572, 667
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	5 cut(s)	88, 263, 647, 771, 853
AlwI	GGATC	6 cut(s)	29, 42, 243, 297, 310, 377
AoxI	GGCC	4 cut(s)	142, 256, 687, 711
ApeKI	GCWGC	2 cut(s)	566, 569
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	2 cut(s)	598, 700
AspS9I	GGNCC	2 cut(s)	41, 142
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	592, 749
AsuNHI	GCTAGC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	41
BalI	TGGCCA	2 cut(s)	689, 713
BamHI	GGATCC	2 cut(s)	34, 302
BanII	GRGCYC	1 cut(s)	518
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
Bbv12I	GWGCWC	1 cut(s)	518
BbvI	GCAGC	2 cut(s)	553, 581
BccI	CCATC	4 cut(s)	23, 419, 443, 503
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	39, 140
BciVI	GTATCC	1 cut(s)	754
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	5 cut(s)	88, 263, 647, 771, 853
BfaI	CTAG	2 cut(s)	122, 189
BfmI	CTRYAG	2 cut(s)	522, 567
BfuAI	ACCTGC	1 cut(s)	759
BfuI	GTATCC	1 cut(s)	754
BglI	GCCNNNNNGGC	1 cut(s)	719
BisI	GCNGC	6 cut(s)	145, 148, 193, 250, 567, 570
BlsI	GCNGC	6 cut(s)	146, 149, 194, 251, 568, 571
Bme1390I	CCNGG	3 cut(s)	39, 140, 462
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 142
BmiI	GGNNCC	3 cut(s)	36, 206, 304
BmrFI	CCNGG	3 cut(s)	39, 140, 462
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	14
BmtI	GCTAGC	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	325
BsaI	GGTCTC	2 cut(s)	263, 853
BsaJI	CCNNGG	3 cut(s)	139, 196, 714
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	4 cut(s)	192, 222, 467, 497
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 757
Bse118I	RCCGGY	2 cut(s)	150, 338
Bse1I	ACTGG	1 cut(s)	307
BseBI	CCWGG	2 cut(s)	39, 140
BseDI	CCNNGG	3 cut(s)	139, 196, 714
BseGI	GGATG	2 cut(s)	514, 547
BseLI	CCNNNNNNNGG	2 cut(s)	313, 757
BseNI	ACTGG	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	553, 581
BseYI	CCCAGC	1 cut(s)	572
BshFI	GGCC	4 cut(s)	144, 258, 689, 713
BsiHKAI	GWGCWC	1 cut(s)	518
BsiSI	CCGG	5 cut(s)	105, 151, 339, 461, 473
BslI	CCNNNNNNNGG	2 cut(s)	313, 757
BsmAI	GTCTC	5 cut(s)	88, 263, 647, 771, 853
BsmBI	CGTCTC	1 cut(s)	647
BsnI	GGCC	4 cut(s)	144, 258, 689, 713
Bso31I	GGTCTC	2 cut(s)	263, 853
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	7 cut(s)	34, 53, 235, 274, 302, 382, 421
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	4 cut(s)	145, 148, 193, 249
BspANI	GGCC	4 cut(s)	144, 258, 689, 713
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	3 cut(s)	36, 206, 304
BspMAI	CTGCAG	2 cut(s)	526, 571
BspMI	ACCTGC	1 cut(s)	759
BspOI	GCTAGC	1 cut(s)	192
BspPI	GGATC	6 cut(s)	29, 42, 243, 297, 310, 377
BspTNI	GGTCTC	2 cut(s)	263, 853
BsrFI	RCCGGY	2 cut(s)	150, 338
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	2 cut(s)	150, 338
BssECI	CCNNGG	3 cut(s)	139, 196, 714
BssMI	GATC	7 cut(s)	34, 53, 235, 274, 302, 382, 421
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	2 cut(s)	39, 140
Bst4CI	ACNGT	2 cut(s)	773, 864
Bst6I	CTCTTC	2 cut(s)	400, 839
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	152, 190, 564
BstDSI	CCRYGG	2 cut(s)	196, 714
BstF5I	GGATG	2 cut(s)	514, 547
BstHHI	GCGC	2 cut(s)	598, 700
BstKTI	GATC	7 cut(s)	37, 56, 238, 277, 305, 385, 424
BstMAI	GTCTC	5 cut(s)	88, 263, 647, 771, 853
BstMBI	GATC	7 cut(s)	34, 53, 235, 274, 302, 382, 421
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 255, 595, 695, 719
BstNI	CCWGG	2 cut(s)	39, 140
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	3 cut(s)	37, 138, 460
BstSFI	CTRYAG	2 cut(s)	522, 567
BstV1I	GCAGC	2 cut(s)	553, 581
BstX2I	RGATCY	3 cut(s)	34, 235, 302
BstYI	RGATCY	3 cut(s)	34, 235, 302
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	4 cut(s)	144, 258, 689, 713
BtgI	CCRYGG	2 cut(s)	196, 714
BtsCI	GGATG	2 cut(s)	514, 547
BtsI	GCAGTG	2 cut(s)	161, 792
BtsIMutI	CAGTG	3 cut(s)	161, 778, 792
BveI	ACCTGC	1 cut(s)	759
Cac8I	GCNNGC	3 cut(s)	152, 190, 564
CciI	TCATGA	1 cut(s)	798
CfoI	GCGC	2 cut(s)	598, 700
Cfr10I	RCCGGY	2 cut(s)	150, 338
Cfr13I	GGNCC	2 cut(s)	41, 142
CseI	GACGC	2 cut(s)	194, 834
Csp6I	GTAC	1 cut(s)	529
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	5 cut(s)	98, 673, 715, 781, 799
CviQI	GTAC	1 cut(s)	529
DpnI	GATC	7 cut(s)	36, 55, 237, 276, 304, 384, 423
DpnII	GATC	7 cut(s)	34, 53, 235, 274, 302, 382, 421
EaeI	YGGCCR	3 cut(s)	256, 687, 711
Eam1104I	CTCTTC	2 cut(s)	400, 839
EarI	CTCTTC	2 cut(s)	400, 839
Ecl136II	GAGCTC	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	714
Eco24I	GRGCYC	1 cut(s)	518
Eco31I	GGTCTC	2 cut(s)	263, 853
Eco47I	GGWCC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	516
EcoRI	GAATTC	1 cut(s)	10
EcoRII	CCWGG	2 cut(s)	37, 138
EcoT14I	CCWWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	714
Esp3I	CGTCTC	1 cut(s)	647
FaeI	CATG	5 cut(s)	101, 676, 718, 784, 802
FatI	CATG	5 cut(s)	97, 672, 714, 780, 798
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	2 cut(s)	333, 747
Fnu4HI	GCNGC	6 cut(s)	145, 148, 193, 250, 567, 570
FokI	GGATG	2 cut(s)	521, 554
FriOI	GRGCYC	1 cut(s)	518
Fsp4HI	GCNGC	6 cut(s)	145, 148, 193, 250, 567, 570
FspAI	RTGCGCAY	1 cut(s)	699
FspBI	CTAG	2 cut(s)	122, 189
FspI	TGCGCA	2 cut(s)	597, 699
GlaI	GCGC	2 cut(s)	597, 699
GluI	GCNGC	6 cut(s)	145, 148, 193, 250, 567, 570
GsaI	CCCAGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	4 cut(s)	144, 258, 689, 713
HapII	CCGG	5 cut(s)	105, 151, 339, 461, 473
HgaI	GACGC	2 cut(s)	194, 834
HhaI	GCGC	2 cut(s)	598, 700
Hin1II	CATG	5 cut(s)	101, 676, 718, 784, 802
Hin6I	GCGC	2 cut(s)	596, 698
HinP1I	GCGC	2 cut(s)	596, 698
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	6 cut(s)	91, 127, 297, 363, 392, 676
HpaII	CCGG	5 cut(s)	105, 151, 339, 461, 473
HphI	GGTGA	2 cut(s)	592, 749
Hpy166II	GTNNAC	3 cut(s)	334, 470, 748
Hpy188I	TCNGA	5 cut(s)	68, 268, 296, 302, 760
Hpy188III	TCNNGA	4 cut(s)	51, 239, 425, 799
Hpy8I	GTNNAC	3 cut(s)	334, 470, 748
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	6 cut(s)	273, 307, 532, 571, 765, 801
HpyCH4III	ACNGT	2 cut(s)	773, 864
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	4 cut(s)	328, 435, 524, 569
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 255, 595, 695, 719
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	5 cut(s)	101, 676, 718, 784, 802
HspAI	GCGC	2 cut(s)	596, 698
KroI	GCCGGC	1 cut(s)	150
KroNI	GCCGGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	7 cut(s)	34, 53, 235, 274, 302, 382, 421
LmnI	GCTCC	1 cut(s)	513
Lsp1109I	GCAGC	2 cut(s)	553, 581
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	122, 189
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	128, 159
MalI	GATC	7 cut(s)	36, 55, 237, 276, 304, 384, 423
MboI	GATC	7 cut(s)	34, 53, 235, 274, 302, 382, 421
MboII	GAAGA	5 cut(s)	65, 213, 387, 595, 856
MfeI	CAATTG	2 cut(s)	636, 723
MflI	RGATCY	3 cut(s)	34, 235, 302
MhlI	GDGCHC	1 cut(s)	518
MlsI	TGGCCA	2 cut(s)	689, 713
MluCI	AATT	4 cut(s)	10, 636, 659, 723
MluNI	TGGCCA	2 cut(s)	689, 713
MlyI	GAGTC	3 cut(s)	136, 386, 670
MnlI	CCTC	3 cut(s)	218, 712, 721
Mox20I	TGGCCA	2 cut(s)	689, 713
MroNI	GCCGGC	1 cut(s)	150
MscI	TGGCCA	2 cut(s)	689, 713
MseI	TTAA	2 cut(s)	173, 821
MslI	CAYNNNNRTG	2 cut(s)	705, 785
Msp20I	TGGCCA	2 cut(s)	689, 713
MspA1I	CMGCKG	2 cut(s)	230, 572
MspI	CCGG	5 cut(s)	105, 151, 339, 461, 473
MspR9I	CCNGG	3 cut(s)	39, 140, 462
MunI	CAATTG	2 cut(s)	636, 723
MvaI	CCWGG	2 cut(s)	39, 140
MwoI	GCNNNNNNNGC	5 cut(s)	185, 255, 595, 695, 719
NaeI	GCCGGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	462
NcoI	CCATGG	1 cut(s)	714
NdeII	GATC	7 cut(s)	34, 53, 235, 274, 302, 382, 421
NgoMIV	GCCGGC	1 cut(s)	150
NheI	GCTAGC	1 cut(s)	188
NlaIII	CATG	5 cut(s)	101, 676, 718, 784, 802
NlaIV	GGNNCC	3 cut(s)	36, 206, 304
NmuCI	GTSAC	2 cut(s)	128, 159
NsbI	TGCGCA	2 cut(s)	597, 699
NspI	RCATGY	1 cut(s)	101
PagI	TCATGA	1 cut(s)	798
PciI	ACATGT	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 351
PdiI	GCCGGC	1 cut(s)	152
PfeI	GAWTC	3 cut(s)	91, 297, 363
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	6 cut(s)	146, 149, 194, 251, 568, 571
PleI	GAGTC	3 cut(s)	135, 386, 670
PpsI	GAGTC	3 cut(s)	135, 386, 670
Ppu21I	YACGTR	1 cut(s)	325
PscI	ACATGT	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	37, 138
PspFI	CCCAGC	1 cut(s)	572
PspGI	CCWGG	2 cut(s)	37, 138
PspN4I	GGNNCC	3 cut(s)	36, 206, 304
PspPI	GGNCC	2 cut(s)	41, 142
PstI	CTGCAG	2 cut(s)	526, 571
PsuI	RGATCY	3 cut(s)	34, 235, 302
PvuII	CAGCTG	2 cut(s)	230, 572
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
RseI	CAYNNNNRTG	2 cut(s)	705, 785
SacI	GAGCTC	1 cut(s)	518
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	173, 821
SatI	GCNGC	6 cut(s)	145, 148, 193, 250, 567, 570
Sau3AI	GATC	7 cut(s)	34, 53, 235, 274, 302, 382, 421
Sau96I	GGNCC	2 cut(s)	41, 142
SchI	GAGTC	3 cut(s)	136, 386, 670
ScrFI	CCNGG	3 cut(s)	39, 140, 462
SduI	GDGCHC	1 cut(s)	518
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	2 cut(s)	522, 567
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	705, 785
Sse9I	AATT	4 cut(s)	10, 636, 659, 723
SsiI	CCGC	4 cut(s)	145, 148, 193, 249
SspMI	CTAG	2 cut(s)	122, 189
SstI	GAGCTC	1 cut(s)	518
StyD4I	CCNGG	3 cut(s)	37, 138, 460
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	2 cut(s)	773, 864
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	5 cut(s)	8, 311, 333, 354, 518
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	4 cut(s)	10, 636, 659, 723
TauI	GCSGC	4 cut(s)	147, 150, 195, 252
TfiI	GAWTC	3 cut(s)	91, 297, 363
Tru1I	TTAA	2 cut(s)	173, 821
Tru9I	TTAA	2 cut(s)	173, 821
TscAI	CASTG	3 cut(s)	161, 778, 792
TseFI	GTSAC	2 cut(s)	128, 159
TseI	GCWGC	2 cut(s)	566, 569
Tsp45I	GTSAC	2 cut(s)	128, 159
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	2 cut(s)	213, 217
TspRI	CASTG	3 cut(s)	161, 778, 792
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	101
XmiI	GTMKAC	2 cut(s)	333, 747
XspI	CTAG	2 cut(s)	122, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.