Rh5AG258400

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
33686526 .. 33690481
3956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG258400.1

Sequence Viewer

Length: 1323 bp
ATGTCTGATCAATTGGTTTCGATTGGTTACTGTGTAATTGATTGCAGGCTCTACTTCACTAAACTTGGGATTGGGAATCCTTCACACGACTATTACTTGCAAGTTGATACCGGAAGTAACCTGTTCTGGGTGAGTTGCGCTGAGTGCGGCAAAGGCTGCCCTGACAGATCTGAACTCATTGGTGTAAAACTCACACCCTACGATCGAAACAGTTCTTCTACTTCAAAGGTGGTATCTTGTGGTGATGACTTTTGCACTTCCCCATCCGTAAAACATATCTCCGACTGCAAGCCAGATGAGAAATGCAACTACCATCTTCAATATGTAGGTAAAGATAAAACTTCCGGATACTTTGTCAAGGATGATGTGCAATTTCAGAAAGTGAGCGGGAACTTTCAAACATCCTCCACTAGTGGATCTGTAATATTCGGGTGCGGGACTCAACAATCTGGCGTGATGAATGACCCTAAAGCAGCAATTTCCGGGTTAATTGGTTTTGACCGGGACAATATAACCATGCTTTCACAGCTAGCAGCCGCAGGAAAGGTGAGGAATAAATTTGCACACTGCTTGGATAGCACGGAACAAGGTGGTGGAATATGGGCTATAGGTGAAGTCGTCGAACCCAAAATGATGCACACATCACCTATGGTACCAAATCAGACTCGTTACAATATTGTGGTGGAGAAAATTGAGGTTGGAAGTGATGCCATAGAACTTCCTACTAGTGGTGGTGGTGATTTGGATGAAACATCTAGCAGCAGTGATCCAGACCAAATTATTGCATTTTTTGACACTGGTACAACATTGGCTCATTTACCTCCAAAGTTGCATGAACCAATAGTGAAGAAGATATTGGCTACAGACCCTGGATTGAAATTCCAAAAAAATGATGACGGCGAGTACTCATGTTTCGAGTATTCCAAAAACGTTGATGAAAAGTTTCCTATTGTCAAGTTCACTTTCAAGAATTCCGCTTCATTGTGGGTGTATCCTCATGATTATTTGTTCAGTAATGTGAAAGAGGGTGCCTGGTGTCATGGTTGGATGAAATTAACTGGGGAAGACGGAGACCTCGACATTATTCTGGGAGATATGACGCTTTCGAATAAGTTAGTCGTACACGATCTTGAAAACCAGGTCCTTGGGTGGGCTGATCACAACTGTTCTTCAAGCATAAAAGTGAAAGATGACGAGTCGGGGTCAGACTACTCTGTTCAGTACCACCATCTTGCTTTTTCTGATGCTTCCAGCCCAAGACTACTGATGTCATTCGTGTTATTAGTAACTGCTGCTGCTGCTCTGCAAATGATCTCAATATAA

Protein Analysis

440

Amino Acids

48.18

Weight (kDa)

5.03

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 18 - 204 2.3e-38 Xylanase inhibitor N-terminal
Asp PF00026 18 - 386 1.2e-20 Eukaryotic aspartyl protease
TAXi_C PF14541 224 - 385 1.3e-13 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 652
AccB1I GGYRCC 2 cut(s) 652, 1028
AccBSI CCGCTC 1 cut(s) 387
AccIII TCCGGA 1 cut(s) 344
AciI CCGC 5 cut(s) 147, 387, 435, 537, 975
AclI AACGTT 1 cut(s) 930
AclWI GGATC 2 cut(s) 424, 761
AcsI RAATTY 3 cut(s) 557, 878, 970
AfaI GTAC 5 cut(s) 654, 802, 905, 1122, 1223
AfiI CCNNNNNNNGG 3 cut(s) 127, 728, 1150
AgsI TTSAA 7 cut(s) 225, 320, 398, 877, 967, 1133, 1173
AhlI ACTAGT 2 cut(s) 410, 725
AjnI CCWGG 3 cut(s) 868, 1031, 1137
AjuI GAANNNNNNNTTGG 2 cut(s) 839, 871
AluBI AGCT 1 cut(s) 529
AluI AGCT 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 1065
AlwI GGATC 2 cut(s) 424, 761
AlwNI CAGNNNCTG 1 cut(s) 869
Aor13HI TCCGGA 1 cut(s) 344
ApeKI GCWGC 7 cut(s) 156, 473, 533, 759, 1292, 1295, 1298
ApoI RAATTY 3 cut(s) 557, 878, 970
Asp700I GAANNNNTTC 2 cut(s) 211, 942
Asp718I GGTACC 1 cut(s) 652
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 1141
AsuC2I CCSGG 2 cut(s) 484, 503
AsuHPI GGTGA 6 cut(s) 142, 254, 559, 623, 636, 749
AsuII TTCGAA 1 cut(s) 1106
AsuNHI GCTAGC 1 cut(s) 529
AvaII GGWCC 1 cut(s) 1141
BanI GGYRCC 2 cut(s) 652, 1028
BbsI GAAGAC 1 cut(s) 1071
BbvI GCAGC 7 cut(s) 143, 485, 545, 771, 1279, 1282, 1285
BccI CCATC 3 cut(s) 271, 321, 1236
BceAI ACGGC 1 cut(s) 913
BciT130I CCWGG 3 cut(s) 870, 1033, 1139
BciVI GTATCC 2 cut(s) 341, 1002
BclI TGATCA 2 cut(s) 7, 1156
BcnI CCSGG 2 cut(s) 484, 503
BcoDI GTCTC 1 cut(s) 1065
BcuI ACTAGT 2 cut(s) 410, 725
BfaI CTAG 4 cut(s) 411, 530, 726, 756
BfmI CTRYAG 2 cut(s) 606, 861
BfuI GTATCC 2 cut(s) 341, 1002
BglII AGATCT 1 cut(s) 167
BisI GCNGC 9 cut(s) 148, 157, 474, 534, 537, 760, 1293, 1296, 1299
BlsI GCNGC 9 cut(s) 149, 158, 475, 535, 538, 761, 1294, 1297, 1300
BmcAI AGTACT 1 cut(s) 905
Bme1390I CCNGG 5 cut(s) 484, 503, 870, 1033, 1139
Bme18I GGWCC 1 cut(s) 1141
BmgT120I GGNCC 1 cut(s) 1141
BmiI GGNNCC 2 cut(s) 654, 1030
BmrFI CCNGG 5 cut(s) 484, 503, 870, 1033, 1139
BmrI ACTGGG 1 cut(s) 1068
BmsI GCATC 3 cut(s) 624, 697, 1234
BmtI GCTAGC 1 cut(s) 533
BmuI ACTGGG 1 cut(s) 1068
BpiI GAAGAC 1 cut(s) 1071
Bpu14I TTCGAA 1 cut(s) 1106
BpuMI CCSGG 2 cut(s) 484, 503
BsaI GGTCTC 1 cut(s) 1065
BsaJI CCNNGG 2 cut(s) 868, 1144
BsaWI WCCGGW 2 cut(s) 110, 344
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 728, 1150
Bse1I ACTGG 2 cut(s) 802, 1063
BseAI TCCGGA 1 cut(s) 344
BseBI CCWGG 3 cut(s) 870, 1033, 1139
BseDI CCNNGG 2 cut(s) 868, 1144
BseGI GGATG 5 cut(s) 263, 367, 401, 751, 1053
BseLI CCNNNNNNNGG 3 cut(s) 127, 728, 1150
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 802, 1063
BseXI GCAGC 7 cut(s) 143, 485, 545, 771, 1279, 1282, 1285
Bsh1285I CGRYCG 1 cut(s) 205
BshNI GGYRCC 2 cut(s) 652, 1028
BsiEI CGRYCG 1 cut(s) 205
BsiSI CCGG 4 cut(s) 111, 345, 483, 502
BslFI GGGAC 2 cut(s) 451, 518
BslI CCNNNNNNNGG 3 cut(s) 127, 728, 1150
BsmAI GTCTC 1 cut(s) 1065
BsmFI GGGAC 2 cut(s) 451, 518
Bso31I GGTCTC 1 cut(s) 1065
Bsp119I TTCGAA 1 cut(s) 1106
Bsp13I TCCGGA 1 cut(s) 344
Bsp143I GATC 8 cut(s) 7, 167, 202, 416, 766, 1126, 1156, 1311
BspACI CCGC 5 cut(s) 147, 387, 435, 537, 975
BspCNI CTCAG 1 cut(s) 133
BspEI TCCGGA 1 cut(s) 344
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 2 cut(s) 654, 1030
BspOI GCTAGC 1 cut(s) 533
BspPI GGATC 2 cut(s) 424, 761
BspT104I TTCGAA 1 cut(s) 1106
BspT107I GGYRCC 2 cut(s) 652, 1028
BspTNI GGTCTC 1 cut(s) 1065
BsrBI CCGCTC 1 cut(s) 387
BsrI ACTGG 2 cut(s) 802, 1063
BssECI CCNNGG 2 cut(s) 868, 1144
BssMI GATC 8 cut(s) 7, 167, 202, 416, 766, 1126, 1156, 1311
BssT1I CCWWGG 1 cut(s) 1144
Bst2UI CCWGG 3 cut(s) 870, 1033, 1139
Bst4CI ACNGT 3 cut(s) 32, 212, 1166
BstAPI GCANNNNNTGC 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 1106
BstC8I GCNNGC 3 cut(s) 47, 290, 531
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 5 cut(s) 263, 367, 401, 751, 1053
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 8 cut(s) 10, 170, 205, 419, 769, 1129, 1159, 1314
BstMAI GTCTC 1 cut(s) 1065
BstMBI GATC 8 cut(s) 7, 167, 202, 416, 766, 1126, 1156, 1311
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 6 cut(s) 144, 153, 156, 526, 576, 1298
BstNI CCWGG 3 cut(s) 870, 1033, 1139
BstSCI CCNGG 5 cut(s) 482, 501, 868, 1031, 1137
BstSFI CTRYAG 2 cut(s) 606, 861
BstV1I GCAGC 7 cut(s) 143, 485, 545, 771, 1279, 1282, 1285
BstV2I GAAGAC 1 cut(s) 1071
BstX2I RGATCY 2 cut(s) 167, 416
BstXI CCANNNNNNTGG 1 cut(s) 1145
BstYI RGATCY 2 cut(s) 167, 416
BsuI GTATCC 2 cut(s) 341, 1002
BtsCI GGATG 5 cut(s) 263, 367, 401, 751, 1053
BtsI GCAGTG 2 cut(s) 565, 769
BtsIMutI CAGTG 3 cut(s) 565, 769, 795
Cac8I GCNNGC 3 cut(s) 47, 290, 531
CaiI CAGNNNCTG 1 cut(s) 869
CciI TCATGA 1 cut(s) 997
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 1141
CseI GACGC 1 cut(s) 1108
CsiI ACCWGGT 1 cut(s) 1137
Csp6I GTAC 5 cut(s) 653, 801, 904, 1121, 1222
CviAII CATG 5 cut(s) 517, 833, 909, 998, 1040
CviQI GTAC 5 cut(s) 653, 801, 904, 1121, 1222
DdeI CTNAG 1 cut(s) 141
DpnI GATC 8 cut(s) 9, 169, 204, 418, 768, 1128, 1158, 1313
DpnII GATC 8 cut(s) 7, 167, 202, 416, 766, 1126, 1156, 1311
Eco130I CCWWGG 1 cut(s) 1144
Eco31I GGTCTC 1 cut(s) 1065
Eco47I GGWCC 1 cut(s) 1141
EcoO109I RGGNCCY 1 cut(s) 1141
EcoRI GAATTC 1 cut(s) 970
EcoRII CCWGG 3 cut(s) 868, 1031, 1137
EcoT14I CCWWGG 1 cut(s) 1144
ErhI CCWWGG 1 cut(s) 1144
FaeI CATG 5 cut(s) 520, 836, 912, 1001, 1043
FaqI GGGAC 2 cut(s) 451, 518
FatI CATG 5 cut(s) 516, 832, 908, 997, 1039
FauI CCCGC 2 cut(s) 380, 428
FbaI TGATCA 2 cut(s) 7, 1156
Fnu4HI GCNGC 9 cut(s) 148, 157, 474, 534, 537, 760, 1293, 1296, 1299
FokI GGATG 5 cut(s) 250, 374, 388, 758, 1060
Fsp4HI GCNGC 9 cut(s) 148, 157, 474, 534, 537, 760, 1293, 1296, 1299
FspBI CTAG 4 cut(s) 411, 530, 726, 756
GlaI GCGC 1 cut(s) 139
GluI GCNGC 9 cut(s) 148, 157, 474, 534, 537, 760, 1293, 1296, 1299
HapII CCGG 4 cut(s) 111, 345, 483, 502
HgaI GACGC 1 cut(s) 1108
HhaI GCGC 1 cut(s) 140
Hin1II CATG 5 cut(s) 520, 836, 912, 1001, 1043
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 4 cut(s) 76, 439, 664, 1196
HpaII CCGG 4 cut(s) 111, 345, 483, 502
HphI GGTGA 6 cut(s) 142, 254, 559, 623, 636, 749
Hpy166II GTNNAC 2 cut(s) 960, 1123
Hpy188I TCNGA 7 cut(s) 7, 172, 283, 378, 663, 1207, 1243
Hpy188III TCNNGA 5 cut(s) 345, 770, 967, 998, 1130
Hpy8I GTNNAC 2 cut(s) 960, 1123
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 3 cut(s) 32, 212, 1166
HpyCH4IV ACGT 1 cut(s) 930
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 153, 156, 526, 576, 1298
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 1 cut(s) 930
Hsp92II CATG 5 cut(s) 520, 836, 912, 1001, 1043
HspAI GCGC 1 cut(s) 138
Kpn2I TCCGGA 1 cut(s) 344
KpnI GGTACC 1 cut(s) 656
Ksp22I TGATCA 2 cut(s) 7, 1156
Kzo9I GATC 8 cut(s) 7, 167, 202, 416, 766, 1126, 1156, 1311
Lsp1109I GCAGC 7 cut(s) 143, 485, 545, 771, 1279, 1282, 1285
LweI GCATC 3 cut(s) 624, 697, 1234
MabI ACCWGGT 1 cut(s) 1137
MaeI CTAG 4 cut(s) 411, 530, 726, 756
MaeII ACGT 1 cut(s) 930
MaeIII GTNAC 4 cut(s) 26, 116, 668, 1285
MalI GATC 8 cut(s) 9, 169, 204, 418, 768, 1128, 1158, 1313
MbiI CCGCTC 1 cut(s) 387
MboI GATC 8 cut(s) 7, 167, 202, 416, 766, 1126, 1156, 1311
MboII GAAGA 6 cut(s) 207, 308, 859, 862, 1076, 1161
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 2 cut(s) 167, 416
MlyI GAGTC 3 cut(s) 433, 658, 1205
MmeI TCCRAC 3 cut(s) 306, 679, 1025
MnlI CCTC 7 cut(s) 415, 543, 688, 831, 1005, 1018, 1085
MroI TCCGGA 1 cut(s) 344
MroXI GAANNNNTTC 2 cut(s) 211, 942
MseI TTAA 2 cut(s) 488, 1055
MslI CAYNNNNRTG 1 cut(s) 1181
MspI CCGG 4 cut(s) 111, 345, 483, 502
MspR9I CCNGG 5 cut(s) 484, 503, 870, 1033, 1139
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 3 cut(s) 870, 1033, 1139
MwoI GCNNNNNNNGC 6 cut(s) 144, 153, 156, 526, 576, 1298
NciI CCSGG 2 cut(s) 484, 503
NdeII GATC 8 cut(s) 7, 167, 202, 416, 766, 1126, 1156, 1311
NheI GCTAGC 1 cut(s) 529
NlaIII CATG 5 cut(s) 520, 836, 912, 1001, 1043
NlaIV GGNNCC 2 cut(s) 654, 1030
NspV TTCGAA 1 cut(s) 1106
PagI TCATGA 1 cut(s) 997
PcsI WCGNNNNNNNCGW 1 cut(s) 1074
PdmI GAANNNNTTC 2 cut(s) 211, 942
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 9 cut(s) 149, 158, 475, 535, 538, 761, 1294, 1297, 1300
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 3 cut(s) 433, 658, 1204
PpsI GAGTC 3 cut(s) 433, 658, 1204
PpuMI RGGWCCY 1 cut(s) 1141
Psp1406I AACGTT 1 cut(s) 930
Psp5II RGGWCCY 1 cut(s) 1141
Psp6I CCWGG 3 cut(s) 868, 1031, 1137
PspGI CCWGG 3 cut(s) 868, 1031, 1137
PspN4I GGNNCC 2 cut(s) 654, 1030
PspPI GGNCC 1 cut(s) 1141
PspPPI RGGWCCY 1 cut(s) 1141
PstNI CAGNNNCTG 1 cut(s) 869
PsuI RGATCY 2 cut(s) 167, 416
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 5 cut(s) 654, 802, 905, 1122, 1223
RsaNI GTAC 5 cut(s) 653, 801, 904, 1121, 1222
RseI CAYNNNNRTG 1 cut(s) 1181
SaqAI TTAA 2 cut(s) 488, 1055
SatI GCNGC 9 cut(s) 148, 157, 474, 534, 537, 760, 1293, 1296, 1299
Sau3AI GATC 8 cut(s) 7, 167, 202, 416, 766, 1126, 1156, 1311
Sau96I GGNCC 1 cut(s) 1141
ScaI AGTACT 1 cut(s) 905
SchI GAGTC 3 cut(s) 433, 658, 1205
ScrFI CCNGG 5 cut(s) 484, 503, 870, 1033, 1139
SexAI ACCWGGT 1 cut(s) 1137
SfaNI GCATC 3 cut(s) 624, 697, 1234
SfcI CTRYAG 2 cut(s) 606, 861
SfuI TTCGAA 1 cut(s) 1106
SinI GGWCC 1 cut(s) 1141
SmiMI CAYNNNNRTG 1 cut(s) 1181
SpeI ACTAGT 2 cut(s) 410, 725
SsiI CCGC 5 cut(s) 147, 387, 435, 537, 975
SspI AATATT 2 cut(s) 426, 676
SspMI CTAG 4 cut(s) 411, 530, 726, 756
StyD4I CCNGG 5 cut(s) 482, 501, 868, 1031, 1137
StyI CCWWGG 1 cut(s) 1144
TaaI ACNGT 3 cut(s) 32, 212, 1166
TaiI ACGT 1 cut(s) 933
TaqI TCGA 6 cut(s) 20, 205, 621, 915, 1077, 1106
TatI WGTACW 1 cut(s) 903
TauI GCSGC 2 cut(s) 150, 539
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 488, 1055
Tru9I TTAA 2 cut(s) 488, 1055
TscAI CASTG 3 cut(s) 572, 769, 802
TseI GCWGC 7 cut(s) 156, 473, 533, 759, 1292, 1295, 1298
TspDTI ATGAA 6 cut(s) 473, 762, 849, 951, 969, 1064
TspGWI ACGGA 3 cut(s) 256, 596, 1083
TspRI CASTG 3 cut(s) 572, 769, 802
VpaK11BI GGWCC 1 cut(s) 1141
XapI RAATTY 3 cut(s) 557, 878, 970
XmnI GAANNNNTTC 2 cut(s) 211, 942
XspI CTAG 4 cut(s) 411, 530, 726, 756
ZrmI AGTACT 1 cut(s) 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.