Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Reverse (-)

39856633 .. 39857800

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG233300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGATCCTGGACCAACATCAAGATCAGTTCTTTTTGGATTTCTTCTACTTGTCTCTTTGATTCTACATGTTTCCGGCAACTTGGTCTTCCCGGCGAGTCACAAGTTCCAGGGCCGCCGCCGGCAGTGGTCACTTAGTGAGTTAAAAGCCCACGACGTTAGGCGCCATGGCCGGAACCTCCTCTCTGTTTCTTCATCAGCTGTGGATCTGGAGTTGGGGCGGCAACTACCACCCTTCCGAGACCGGTCTCTACTTCGCCAAGTTCGGAATCGGATCCCCATCGAAGGACTACTACGCGCGTGCAAGTCGACACCGGCAACAATATTTTGTGGGTCAATTGCATTGAGTGCGCCAATTGCCCCAAGAAAAGCGACATTAGAGTCAAGCTCACATTGTATGATTCGAAGGACTTTTCCACTTCCCAATCCACTTGATTGCGTTTTCGTCGAGGCCTTCTATGAACATTTTGTGATTTGGAAGAGAATGGGGTTTTGGGTTTTTGAGGGTTCGAGATTGAAGAAGGGTTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

177

Amino Acids

20.01

Weight (kDa)

11.01

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	379
AccB1I	GGYRCC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	308
AccII	CGCG	2 cut(s)	297, 299
AciI	CCGC	3 cut(s)	115, 118, 220
AclWI	GGATC	4 cut(s)	12, 213, 268, 281
AcoI	YGGCCR	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	67
AgeI	ACCGGT	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	517
AjnI	CCWGG	2 cut(s)	7, 108
AjuI	GAANNNNNNNTTGG	2 cut(s)	475, 507
AluBI	AGCT	2 cut(s)	200, 387
AluI	AGCT	2 cut(s)	200, 387
Alw26I	GTCTC	3 cut(s)	58, 234, 252
AlwI	GGATC	4 cut(s)	12, 213, 268, 281
AoxI	GGCC	3 cut(s)	112, 169, 450
AsiGI	ACCGGT	1 cut(s)	243
AspLEI	GCGC	3 cut(s)	165, 299, 352
AspS9I	GGNCC	2 cut(s)	11, 112
AsuC2I	CCSGG	1 cut(s)	92
AsuII	TTCGAA	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	11
BamHI	GGATCC	2 cut(s)	4, 273
BanI	GGYRCC	1 cut(s)	162
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
BbsI	GAAGAC	1 cut(s)	79
BccI	CCATC	1 cut(s)	287
BciT130I	CCWGG	2 cut(s)	9, 110
BcnI	CCSGG	1 cut(s)	92
BcoDI	GTCTC	3 cut(s)	58, 234, 252
BfoI	RGCGCY	1 cut(s)	166
BisI	GCNGC	3 cut(s)	115, 118, 221
BlsI	GCNGC	3 cut(s)	116, 119, 222
Bme1390I	CCNGG	3 cut(s)	9, 92, 110
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	11, 112
BmiI	GGNNCC	4 cut(s)	6, 164, 176, 275
BmrFI	CCNGG	3 cut(s)	9, 92, 110
BpiI	GAAGAC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	230
Bpu14I	TTCGAA	1 cut(s)	403
BpuMI	CCSGG	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	163
BsaI	GGTCTC	2 cut(s)	234, 252
BsaJI	CCNNGG	2 cut(s)	109, 166
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse118I	RCCGGY	3 cut(s)	120, 243, 313
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	2 cut(s)	9, 110
BseDI	CCNNGG	2 cut(s)	109, 166
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	170
Bsh1236I	CGCG	2 cut(s)	297, 299
BshFI	GGCC	3 cut(s)	114, 171, 452
BshNI	GGYRCC	1 cut(s)	162
BshTI	ACCGGT	1 cut(s)	243
BsiSI	CCGG	6 cut(s)	75, 92, 121, 172, 244, 314
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	3 cut(s)	58, 234, 252
BsnI	GGCC	3 cut(s)	114, 171, 452
Bso31I	GGTCTC	2 cut(s)	234, 252
Bsp119I	TTCGAA	1 cut(s)	403
Bsp143I	GATC	4 cut(s)	4, 23, 205, 273
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	3 cut(s)	115, 118, 220
BspANI	GGCC	3 cut(s)	114, 171, 452
BspFNI	CGCG	2 cut(s)	297, 299
BspLI	GGNNCC	4 cut(s)	6, 164, 176, 275
BspPI	GGATC	4 cut(s)	12, 213, 268, 281
BspT104I	TTCGAA	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	162
BspTNI	GGTCTC	2 cut(s)	234, 252
BsrFI	RCCGGY	3 cut(s)	120, 243, 313
BssAI	RCCGGY	3 cut(s)	120, 243, 313
BssECI	CCNNGG	2 cut(s)	109, 166
BssMI	GATC	4 cut(s)	4, 23, 205, 273
BssNI	GRCGYC	1 cut(s)	163
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	9, 110
Bst6I	CTCTTC	1 cut(s)	473
BstACI	GRCGYC	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	122, 301
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	166
BstFNI	CGCG	2 cut(s)	297, 299
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	3 cut(s)	165, 299, 352
BstKTI	GATC	4 cut(s)	7, 26, 208, 276
BstMAI	GTCTC	3 cut(s)	58, 234, 252
BstMBI	GATC	4 cut(s)	4, 23, 205, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 356
BstNI	CCWGG	2 cut(s)	9, 110
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	3 cut(s)	7, 90, 108
BstUI	CGCG	2 cut(s)	297, 299
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	3 cut(s)	4, 205, 273
BstYI	RGATCY	3 cut(s)	4, 205, 273
BsuRI	GGCC	3 cut(s)	114, 171, 452
BtgI	CCRYGG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	122, 301
CfoI	GCGC	3 cut(s)	165, 299, 352
Cfr10I	RCCGGY	3 cut(s)	120, 243, 313
Cfr13I	GGNCC	2 cut(s)	11, 112
CspAI	ACCGGT	1 cut(s)	243
CviAII	CATG	2 cut(s)	68, 167
CviJI	RGCY	6 cut(s)	114, 149, 171, 200, 387, 452
CviKI_1	RGCY	6 cut(s)	114, 149, 171, 200, 387, 452
DdeI	CTNAG	1 cut(s)	134
DinI	GGCGCC	1 cut(s)	164
DpnI	GATC	4 cut(s)	6, 25, 207, 275
DpnII	GATC	4 cut(s)	4, 23, 205, 273
DraIII	CACNNNGTG	1 cut(s)	137
DrdI	GACNNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	166
Eco147I	AGGCCT	1 cut(s)	452
Eco31I	GGTCTC	2 cut(s)	234, 252
Eco47I	GGWCC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	7, 108
EcoT14I	CCWWGG	1 cut(s)	166
EgeI	GGCGCC	1 cut(s)	164
EheI	GGCGCC	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	2 cut(s)	71, 170
FaiI	YATR	4 cut(s)	69, 168, 398, 459
FatI	CATG	2 cut(s)	67, 166
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	3 cut(s)	115, 118, 221
Fsp4HI	GCNGC	3 cut(s)	115, 118, 221
GlaI	GCGC	3 cut(s)	164, 298, 351
GluI	GCNGC	3 cut(s)	115, 118, 221
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	3 cut(s)	114, 171, 452
HapII	CCGG	6 cut(s)	75, 92, 121, 172, 244, 314
HhaI	GCGC	3 cut(s)	165, 299, 352
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	71, 170
Hin6I	GCGC	3 cut(s)	163, 297, 350
HinP1I	GCGC	3 cut(s)	163, 297, 350
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	5 cut(s)	61, 97, 268, 380, 400
HpaII	CCGG	6 cut(s)	75, 92, 121, 172, 244, 314
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	3 cut(s)	239, 267, 273
Hpy188III	TCNNGA	3 cut(s)	21, 209, 510
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	2 cut(s)	158, 449
HpyAV	CCTTC	5 cut(s)	244, 278, 399, 463, 514
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	303, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 356
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	71, 170
HspAI	GCGC	3 cut(s)	163, 297, 350
KasI	GGCGCC	1 cut(s)	162
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
Kzo9I	GATC	4 cut(s)	4, 23, 205, 273
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	98, 129
MalI	GATC	4 cut(s)	6, 25, 207, 275
MboI	GATC	4 cut(s)	4, 23, 205, 273
MboII	GAAGA	5 cut(s)	35, 79, 183, 490, 529
MfeI	CAATTG	2 cut(s)	336, 354
MflI	RGATCY	3 cut(s)	4, 205, 273
MluCI	AATT	2 cut(s)	336, 354
Mly113I	GGCGCC	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	106, 389
MnlI	CCTC	4 cut(s)	188, 191, 442, 496
MroNI	GCCGGC	1 cut(s)	120
MseI	TTAA	2 cut(s)	143, 532
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	6 cut(s)	75, 92, 121, 172, 244, 314
MspR9I	CCNGG	3 cut(s)	9, 92, 110
MunI	CAATTG	2 cut(s)	336, 354
MvaI	CCWGG	2 cut(s)	9, 110
MvnI	CGCG	2 cut(s)	297, 299
MwoI	GCNNNNNNNGC	2 cut(s)	347, 356
NaeI	GCCGGC	1 cut(s)	122
NarI	GGCGCC	1 cut(s)	163
NciI	CCSGG	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	4 cut(s)	4, 23, 205, 273
NgoMIV	GCCGGC	1 cut(s)	120
NlaIII	CATG	2 cut(s)	71, 170
NlaIV	GGNNCC	4 cut(s)	6, 164, 176, 275
NmuCI	GTSAC	2 cut(s)	98, 129
NspI	RCATGY	1 cut(s)	71
NspV	TTCGAA	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	452
PciI	ACATGT	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	122
PfeI	GAWTC	3 cut(s)	61, 268, 400
PfoI	TCCNGGA	1 cut(s)	7
PinAI	ACCGGT	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	116, 119, 222
PleI	GAGTC	2 cut(s)	105, 388
PluTI	GGCGCC	1 cut(s)	166
PpsI	GAGTC	2 cut(s)	105, 388
PscI	ACATGT	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	7, 108
PspGI	CCWGG	2 cut(s)	7, 108
PspN4I	GGNNCC	4 cut(s)	6, 164, 176, 275
PspPI	GGNCC	2 cut(s)	11, 112
PsuI	RGATCY	3 cut(s)	4, 205, 273
PvuII	CAGCTG	1 cut(s)	200
SalI	GTCGAC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	143, 532
SatI	GCNGC	3 cut(s)	115, 118, 221
Sau3AI	GATC	4 cut(s)	4, 23, 205, 273
Sau96I	GGNCC	2 cut(s)	11, 112
SchI	GAGTC	2 cut(s)	106, 389
ScrFI	CCNGG	3 cut(s)	9, 92, 110
SetI	ASST	4 cut(s)	159, 180, 202, 389
SfoI	GGCGCC	1 cut(s)	164
SfuI	TTCGAA	1 cut(s)	403
SinI	GGWCC	1 cut(s)	11
Sse9I	AATT	2 cut(s)	336, 354
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	3 cut(s)	115, 118, 220
SspDI	GGCGCC	1 cut(s)	162
SspI	AATATT	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	3 cut(s)	7, 90, 108
StyI	CCWWGG	1 cut(s)	166
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	5 cut(s)	282, 308, 403, 447, 509
TasI	AATT	2 cut(s)	336, 354
TauI	GCSGC	3 cut(s)	117, 120, 223
TfiI	GAWTC	3 cut(s)	61, 268, 400
Tru1I	TTAA	2 cut(s)	143, 532
Tru9I	TTAA	2 cut(s)	143, 532
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	98, 129
Tsp45I	GTSAC	2 cut(s)	98, 129
TspDTI	ATGAA	2 cut(s)	183, 474
TspRI	CASTG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	11
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.