Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Reverse (-)

15290967 .. 15292671

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00175790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGATCCTGGACCAACATCAAGATCGGTTCTTTTCGGATTTCTTCTACTTGTCTCTTTGATTCTACATGTTTCCGGCAACTTGGTCTTCCCGGTGAGTCACAAGTTCCAGGGCCGCCGCGGGCAGTGGTCACTTAGTGAGTTAAAAGCCCACGACGCTCGGCGCCACGGCCGTAACCTCCTCTCTGTTTCTTCATCAGCTGTGGATCTGGAGCTGGGCGGCAACGGCCACCCTTCCGAGACCGGTCTCTACTTCGCCAAGCTCGGGATCGGATCCCCGTCGAAGGACTACTACGTGCAAGTCGACACCGGCAGCGACATTTTGTGGGTCAATTGCATTGAGTGCGCCAATTGCCCCAAGAAAAGCGACATTGGAGTCAAGCTCACATTGTATGATCCAAAGGACTCTTCCACTTCCCAATCCATCACTTGTGATCAGGAGTTTTGCACTTCGCAATACGATGGTCAGTTGCCGGGTTGTAAACCGGAGTTGCTGTGTCAATATAATGTGGTCTATGGGGATGGGAGCTCGACTGCAGGGTACTTTGTGAAGGATGTGATTGAGTTTGATAAGGTTAGTGGGAGTCATCAGACTTCGGTGTCGAATGGGAGCATAGTTTTCGGGTGTGGAGCTAAGCAGTCAGGGCAGCTAGGGAAGTCGTCTGAGGCGCTTGATGGGATTCTTGGTTTCGGGCAAGCGAATTCGTCCATGATTTCGCAGCTGGCTGCAGCTGGGAAGGTGAAGAAGCAGTTTGCGCATTGTTTGGACAATGTGAATGGGGGTGGCATTTTCGCAATTGGGGAAGTTGTGGAGACGAAATTGAAGCTGAACATGACTCCATTGGTGGCCAAAAGTGCGCATTACAATGTGGTCATGGAGGCGATTGAGGTGGGTGGTGATGTTGTAGACCTGCCCTCGGATACATTTGACAGTGGAGACAAGGAGGGGACCATTATCGATAGTGGCACCACTTTGGCTTATCTTCCACAGTATACGGAGAATGTGGATGATGGATTTCCGGTGGTGACTTTTCATTTCAAGAACTCGGTTTCGCTTTCGGTGTATCCCCATGAGTATTTGTTCCAATTGAAAGAGTATGTATGGTGTTCTGGGTGGCAGAGCAGTGGGATGAAAACCAAAGATGGAAGCTCCATGACTCTTCTGGGAGATTTGGTGCTCTCGAATAAGTTGGTGTTTTACGATCTTGAGAATCAGTCCATTGGGTGGATTGATTACAATTGCTCTTCAAGCATCAAAGTGAGGGATGACAGTTCGGGGGCAATATACTATGTTGATGCACACAATATTTCTTCTGCTTCAGATTGTGCTCTGACACTTGAGTTCAAAGTTGCTTCTGATTGTCATTATGATACACATAGGATATGGGGATGTCCAGTTGGTATAATACATGAGAGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

473

Amino Acids

51.13

Weight (kDa)

5.11

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	84 - 267	8.8e-40	Xylanase inhibitor N-terminal
Asp	PF00026	84 - 331	7.4e-16	Eukaryotic aspartyl protease
TAXi_C	PF14541	336 - 408	8.1e-08	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	374, 598
Acc16I	TGCGCA	2 cut(s)	756, 858
Acc36I	ACCTGC	1 cut(s)	918
AccB1I	GGYRCC	2 cut(s)	162, 965
AccB7I	CCANNNNNTGG	1 cut(s)	1224
AccI	GTMKAC	3 cut(s)	303, 906, 992
AccII	CGCG	1 cut(s)	120
AciI	CCGC	4 cut(s)	115, 118, 120, 219
AclWI	GGATC	6 cut(s)	12, 213, 267, 275, 280, 389
AcoI	YGGCCR	3 cut(s)	169, 226, 846
AcsI	RAATTY	1 cut(s)	700
AcuI	CTGAAG	1 cut(s)	1302
AcyI	GRCGYC	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	4 cut(s)	264, 283, 916, 1224
AflIII	ACRYGT	1 cut(s)	67
AgeI	ACCGGT	1 cut(s)	242
AgsI	TTSAA	5 cut(s)	823, 1039, 1090, 1248, 1345
AjnI	CCWGG	2 cut(s)	7, 108
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
Alw21I	GWGCWC	3 cut(s)	530, 1179, 1330
Alw26I	GTCTC	5 cut(s)	58, 233, 251, 806, 930
AlwI	GGATC	6 cut(s)	12, 213, 267, 275, 280, 389
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	4 cut(s)	112, 169, 226, 846
ApeKI	GCWGC	5 cut(s)	312, 646, 718, 725, 728
ApoI	RAATTY	1 cut(s)	700
AsiGI	ACCGGT	1 cut(s)	242
AspLEI	GCGC	5 cut(s)	165, 347, 670, 757, 859
AspS9I	GGNCC	3 cut(s)	11, 112, 948
AsuC2I	CCSGG	2 cut(s)	92, 474
AsuHPI	GGTGA	4 cut(s)	106, 751, 908, 1036
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	2 cut(s)	11, 948
BalI	TGGCCA	1 cut(s)	848
BamHI	GGATCC	2 cut(s)	4, 272
BanI	GGYRCC	2 cut(s)	162, 965
BanII	GRGCYC	1 cut(s)	530
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	3 cut(s)	530, 1179, 1330
BbvI	GCAGC	5 cut(s)	324, 658, 712, 730, 740
BccI	CCATC	6 cut(s)	431, 455, 515, 668, 1004, 1136
BceAI	ACGGC	3 cut(s)	156, 184, 241
BcgI	CGANNNNNNTGC	2 cut(s)	601, 635
BciT130I	CCWGG	2 cut(s)	9, 110
BciVI	GTATCC	2 cut(s)	913, 1074
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	2 cut(s)	92, 474
BcoDI	GTCTC	5 cut(s)	58, 233, 251, 806, 930
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	2 cut(s)	534, 726
BfoI	RGCGCY	2 cut(s)	166, 671
BfuAI	ACCTGC	1 cut(s)	918
BfuI	GTATCC	2 cut(s)	913, 1074
BisI	GCNGC	8 cut(s)	115, 118, 220, 313, 647, 719, 726, 729
BlpI	GCTNAGC	1 cut(s)	633
BlsI	GCNGC	8 cut(s)	116, 119, 221, 314, 648, 720, 727, 730
Bme1390I	CCNGG	4 cut(s)	9, 92, 110, 474
Bme18I	GGWCC	2 cut(s)	11, 948
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	3 cut(s)	11, 112, 948
BmiI	GGNNCC	5 cut(s)	6, 164, 274, 949, 967
BmrFI	CCNGG	4 cut(s)	9, 92, 110, 474
BmsI	GCATC	2 cut(s)	1260, 1285
BpiI	GAAGAC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	366, 398
BpmI	CTGGAG	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	2 cut(s)	1226, 1358
BpuMI	CCSGG	2 cut(s)	92, 474
Bsa29I	ATCGAT	1 cut(s)	957
BsaAI	YACGTR	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	163
BsaI	GGTCTC	2 cut(s)	233, 251
BsaJI	CCNNGG	4 cut(s)	109, 118, 166, 915
BsaWI	WCCGGW	3 cut(s)	242, 484, 1018
BsaXI	ACNNNNNCTCC	4 cut(s)	479, 509, 1158, 1188
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 283, 916, 1224
Bse118I	RCCGGY	2 cut(s)	242, 308
Bse1I	ACTGG	1 cut(s)	1394
BseBI	CCWGG	2 cut(s)	9, 110
BseCI	ATCGAT	1 cut(s)	957
BseDI	CCNNGG	4 cut(s)	109, 118, 166, 915
BseGI	GGATG	6 cut(s)	526, 559, 1012, 1134, 1270, 1394
BseLI	CCNNNNNNNGG	4 cut(s)	264, 283, 916, 1224
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	1 cut(s)	1394
BseRI	GAGGAG	1 cut(s)	170
BseX3I	CGGCCG	1 cut(s)	169
BseXI	GCAGC	5 cut(s)	324, 658, 712, 730, 740
BseYI	CCCAGC	2 cut(s)	214, 731
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	4 cut(s)	114, 171, 228, 848
BshNI	GGYRCC	2 cut(s)	162, 965
BshTI	ACCGGT	1 cut(s)	242
BshVI	ATCGAT	1 cut(s)	957
BsiEI	CGRYCG	1 cut(s)	172
BsiHKAI	GWGCWC	3 cut(s)	530, 1179, 1330
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	7 cut(s)	75, 92, 243, 309, 473, 485, 1019
BslFI	GGGAC	1 cut(s)	961
BslI	CCNNNNNNNGG	4 cut(s)	264, 283, 916, 1224
BsmAI	GTCTC	5 cut(s)	58, 233, 251, 806, 930
BsmBI	CGTCTC	1 cut(s)	806
BsmFI	GGGAC	1 cut(s)	961
BsnI	GGCC	4 cut(s)	114, 171, 228, 848
Bso31I	GGTCTC	2 cut(s)	233, 251
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	530, 1179, 1330
Bsp143I	GATC	8 cut(s)	4, 23, 205, 267, 272, 394, 433, 1201
Bsp1720I	GCTNAGC	1 cut(s)	633
BspACI	CCGC	4 cut(s)	115, 118, 120, 219
BspANI	GGCC	4 cut(s)	114, 171, 228, 848
BspCNI	CTCAG	1 cut(s)	655
BspDI	ATCGAT	1 cut(s)	957
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	5 cut(s)	6, 164, 274, 949, 967
BspMAI	CTGCAG	2 cut(s)	538, 730
BspMI	ACCTGC	1 cut(s)	918
BspPI	GGATC	6 cut(s)	12, 213, 267, 275, 280, 389
BspQI	GCTCTTC	1 cut(s)	1249
BspT107I	GGYRCC	2 cut(s)	162, 965
BspTNI	GGTCTC	2 cut(s)	233, 251
BsrFI	RCCGGY	2 cut(s)	242, 308
BsrI	ACTGG	1 cut(s)	1394
BssAI	RCCGGY	2 cut(s)	242, 308
BssECI	CCNNGG	4 cut(s)	109, 118, 166, 915
BssMI	GATC	8 cut(s)	4, 23, 205, 267, 272, 394, 433, 1201
BssNAI	GTATAC	1 cut(s)	993
BssNI	GRCGYC	1 cut(s)	163
Bst1107I	GTATAC	1 cut(s)	993
Bst2UI	CCWGG	2 cut(s)	9, 110
Bst4CI	ACNGT	3 cut(s)	932, 990, 1271
Bst6I	CTCTTC	3 cut(s)	412, 1164, 1249
BstACI	GRCGYC	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	3 cut(s)	122, 696, 723
BstDEI	CTNAG	3 cut(s)	134, 633, 663
BstDSI	CCRYGG	2 cut(s)	118, 166
BstF5I	GGATG	6 cut(s)	526, 559, 1012, 1134, 1270, 1394
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	2 cut(s)	166, 671
BstHHI	GCGC	5 cut(s)	165, 347, 670, 757, 859
BstKTI	GATC	8 cut(s)	7, 26, 208, 270, 275, 397, 436, 1204
BstMAI	GTCTC	5 cut(s)	58, 233, 251, 806, 930
BstMBI	GATC	8 cut(s)	4, 23, 205, 267, 272, 394, 433, 1201
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	8 cut(s)	155, 225, 342, 351, 643, 754, 854, 1248
BstNI	CCWGG	2 cut(s)	9, 110
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	4 cut(s)	7, 90, 108, 472
BstSFI	CTRYAG	2 cut(s)	534, 726
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	5 cut(s)	324, 658, 712, 730, 740
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	3 cut(s)	4, 205, 272
BstYI	RGATCY	3 cut(s)	4, 205, 272
BstZ17I	GTATAC	1 cut(s)	993
BstZI	CGGCCG	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	957
BsuI	GTATCC	2 cut(s)	913, 1074
BsuRI	GGCC	4 cut(s)	114, 171, 228, 848
BsuTUI	ATCGAT	1 cut(s)	957
BtgI	CCRYGG	2 cut(s)	118, 166
BtsCI	GGATG	6 cut(s)	526, 559, 1012, 1134, 1270, 1394
BtsI	GCAGTG	2 cut(s)	131, 1129
BtsIMutI	CAGTG	3 cut(s)	131, 937, 1129
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	3 cut(s)	122, 696, 723
CfoI	GCGC	5 cut(s)	165, 347, 670, 757, 859
Cfr10I	RCCGGY	2 cut(s)	242, 308
Cfr13I	GGNCC	3 cut(s)	11, 112, 948
Cfr42I	CCGCGG	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	957
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	541
CspAI	ACCGGT	1 cut(s)	242
CviAII	CATG	7 cut(s)	68, 709, 832, 874, 1070, 1153, 1409
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	3 cut(s)	134, 633, 663
DinI	GGCGCC	1 cut(s)	164
DpnI	GATC	8 cut(s)	6, 25, 207, 269, 274, 396, 435, 1203
DpnII	GATC	8 cut(s)	4, 23, 205, 267, 272, 394, 433, 1201
DraIII	CACNNNGTG	1 cut(s)	137
DrdI	GACNNNNNNGTC	2 cut(s)	374, 598
DseDI	GACNNNNNNGTC	2 cut(s)	374, 598
EaeI	YGGCCR	3 cut(s)	169, 226, 846
EagI	CGGCCG	1 cut(s)	169
Eam1104I	CTCTTC	3 cut(s)	412, 1164, 1249
EarI	CTCTTC	3 cut(s)	412, 1164, 1249
Ecl136II	GAGCTC	1 cut(s)	528
EclXI	CGGCCG	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	530
Eco31I	GGTCTC	2 cut(s)	233, 251
Eco47I	GGWCC	2 cut(s)	11, 948
Eco52I	CGGCCG	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	1302
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	7, 108
EcoT38I	GRGCYC	1 cut(s)	530
EgeI	GGCGCC	1 cut(s)	164
EheI	GGCGCC	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	806
FaeI	CATG	7 cut(s)	71, 712, 835, 877, 1073, 1156, 1412
FaqI	GGGAC	1 cut(s)	961
FatI	CATG	7 cut(s)	67, 708, 831, 873, 1069, 1152, 1408
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	3 cut(s)	303, 906, 992
Fnu4HI	GCNGC	8 cut(s)	115, 118, 220, 313, 647, 719, 726, 729
FokI	GGATG	6 cut(s)	533, 566, 1019, 1141, 1277, 1401
FriOI	GRGCYC	1 cut(s)	530
Fsp4HI	GCNGC	8 cut(s)	115, 118, 220, 313, 647, 719, 726, 729
FspAI	RTGCGCAY	1 cut(s)	858
FspBI	CTAG	1 cut(s)	650
FspI	TGCGCA	2 cut(s)	756, 858
GlaI	GCGC	5 cut(s)	164, 346, 669, 756, 858
GluI	GCNGC	8 cut(s)	115, 118, 220, 313, 647, 719, 726, 729
GsaI	CCCAGC	2 cut(s)	218, 735
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	2 cut(s)	166, 671
HaeIII	GGCC	4 cut(s)	114, 171, 228, 848
HapII	CCGG	7 cut(s)	75, 92, 243, 309, 473, 485, 1019
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	5 cut(s)	165, 347, 670, 757, 859
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	7 cut(s)	71, 712, 835, 877, 1073, 1156, 1412
Hin6I	GCGC	5 cut(s)	163, 345, 668, 755, 857
HinP1I	GCGC	5 cut(s)	163, 345, 668, 755, 857
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	9 cut(s)	61, 97, 375, 404, 583, 679, 835, 1156, 1210
HpaII	CCGG	7 cut(s)	75, 92, 243, 309, 473, 485, 1019
HphI	GGTGA	4 cut(s)	106, 751, 908, 1036
Hpy166II	GTNNAC	4 cut(s)	304, 482, 907, 993
Hpy188I	TCNGA	9 cut(s)	38, 238, 272, 591, 664, 919, 1321, 1332, 1357
Hpy188III	TCNNGA	7 cut(s)	21, 209, 265, 437, 1039, 1180, 1205
Hpy8I	GTNNAC	4 cut(s)	304, 482, 907, 993
Hpy99I	CGWCG	2 cut(s)	158, 283
HpyAV	CCTTC	4 cut(s)	243, 277, 544, 730
HpyCH4III	ACNGT	3 cut(s)	932, 990, 1271
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	6 cut(s)	298, 336, 447, 536, 728, 1298
HpyF10VI	GCNNNNNNNGC	8 cut(s)	155, 225, 342, 351, 643, 754, 854, 1248
HpyF3I	CTNAG	3 cut(s)	134, 633, 663
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	7 cut(s)	71, 712, 835, 877, 1073, 1156, 1412
HspAI	GCGC	5 cut(s)	163, 345, 668, 755, 857
KasI	GGCGCC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	433
KspI	CCGCGG	1 cut(s)	121
Kzo9I	GATC	8 cut(s)	4, 23, 205, 267, 272, 394, 433, 1201
LguI	GCTCTTC	1 cut(s)	1249
LmnI	GCTCC	5 cut(s)	211, 525, 609, 629, 1154
Lsp1109I	GCAGC	5 cut(s)	324, 658, 712, 730, 740
LweI	GCATC	2 cut(s)	1260, 1285
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	4 cut(s)	98, 129, 173, 1024
MalI	GATC	8 cut(s)	6, 25, 207, 269, 274, 396, 435, 1203
MboI	GATC	8 cut(s)	4, 23, 205, 267, 272, 394, 433, 1201
MboII	GAAGA	9 cut(s)	35, 79, 183, 399, 754, 974, 1151, 1236, 1302
MfeI	CAATTG	5 cut(s)	331, 349, 795, 1085, 1237
MflI	RGATCY	3 cut(s)	4, 205, 272
MhlI	GDGCHC	3 cut(s)	530, 1179, 1330
MlsI	TGGCCA	1 cut(s)	848
MluCI	AATT	7 cut(s)	331, 349, 700, 795, 818, 1085, 1237
MluNI	TGGCCA	1 cut(s)	848
Mly113I	GGCGCC	1 cut(s)	163
MlyI	GAGTC	6 cut(s)	106, 384, 398, 592, 829, 1150
MnlI	CCTC	8 cut(s)	188, 191, 658, 871, 880, 925, 937, 1254
Mox20I	TGGCCA	1 cut(s)	848
MscI	TGGCCA	1 cut(s)	848
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	3 cut(s)	864, 1256, 1413
Msp20I	TGGCCA	1 cut(s)	848
MspA1I	CMGCKG	4 cut(s)	120, 200, 721, 731
MspI	CCGG	7 cut(s)	75, 92, 243, 309, 473, 485, 1019
MspR9I	CCNGG	4 cut(s)	9, 92, 110, 474
MunI	CAATTG	5 cut(s)	331, 349, 795, 1085, 1237
MvaI	CCWGG	2 cut(s)	9, 110
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	8 cut(s)	155, 225, 342, 351, 643, 754, 854, 1248
NarI	GGCGCC	1 cut(s)	163
NciI	CCSGG	2 cut(s)	92, 474
NdeII	GATC	8 cut(s)	4, 23, 205, 267, 272, 394, 433, 1201
NlaIII	CATG	7 cut(s)	71, 712, 835, 877, 1073, 1156, 1412
NlaIV	GGNNCC	5 cut(s)	6, 164, 274, 949, 967
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	3 cut(s)	98, 129, 1024
NsbI	TGCGCA	2 cut(s)	756, 858
NspI	RCATGY	1 cut(s)	71
PciI	ACATGT	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	1249
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	3 cut(s)	61, 679, 1210
PflMI	CCANNNNNTGG	1 cut(s)	1224
PfoI	TCCNGGA	1 cut(s)	7
PinAI	ACCGGT	1 cut(s)	242
PkrI	GCNGC	8 cut(s)	116, 119, 221, 314, 648, 720, 727, 730
PleI	GAGTC	6 cut(s)	105, 383, 398, 591, 829, 1150
PluTI	GGCGCC	1 cut(s)	166
PpsI	GAGTC	6 cut(s)	105, 383, 398, 591, 829, 1150
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	530
Psp6I	CCWGG	2 cut(s)	7, 108
PspFI	CCCAGC	2 cut(s)	214, 731
PspGI	CCWGG	2 cut(s)	7, 108
PspN4I	GGNNCC	5 cut(s)	6, 164, 274, 949, 967
PspPI	GGNCC	3 cut(s)	11, 112, 948
PstI	CTGCAG	2 cut(s)	538, 730
PsuI	RGATCY	3 cut(s)	4, 205, 272
PvuII	CAGCTG	3 cut(s)	200, 721, 731
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	3 cut(s)	864, 1256, 1413
SacI	GAGCTC	1 cut(s)	530
SacII	CCGCGG	1 cut(s)	121
SalI	GTCGAC	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	1249
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	8 cut(s)	115, 118, 220, 313, 647, 719, 726, 729
Sau3AI	GATC	8 cut(s)	4, 23, 205, 267, 272, 394, 433, 1201
Sau96I	GGNCC	3 cut(s)	11, 112, 948
SchI	GAGTC	6 cut(s)	106, 384, 398, 592, 829, 1150
ScrFI	CCNGG	4 cut(s)	9, 92, 110, 474
SduI	GDGCHC	3 cut(s)	530, 1179, 1330
SfaNI	GCATC	2 cut(s)	1260, 1285
SfcI	CTRYAG	2 cut(s)	534, 726
SfoI	GGCGCC	1 cut(s)	164
Sfr303I	CCGCGG	1 cut(s)	121
SgrBI	CCGCGG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	11, 948
SmiMI	CAYNNNNRTG	3 cut(s)	864, 1256, 1413
SmlI	CTYRAG	2 cut(s)	1205, 1337
SmoI	CTYRAG	2 cut(s)	1205, 1337
Sse9I	AATT	7 cut(s)	331, 349, 700, 795, 818, 1085, 1237
SsiI	CCGC	4 cut(s)	115, 118, 120, 219
SspDI	GGCGCC	1 cut(s)	162
SspI	AATATT	1 cut(s)	1306
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	530
StyD4I	CCNGG	4 cut(s)	7, 90, 108, 472
TaaI	ACNGT	3 cut(s)	932, 990, 1271
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	6 cut(s)	281, 303, 530, 602, 957, 1181
TasI	AATT	7 cut(s)	331, 349, 700, 795, 818, 1085, 1237
TauI	GCSGC	3 cut(s)	117, 120, 222
TfiI	GAWTC	3 cut(s)	61, 679, 1210
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	3 cut(s)	131, 937, 1129
TseFI	GTSAC	3 cut(s)	98, 129, 1024
TseI	GCWGC	5 cut(s)	312, 646, 718, 725, 728
Tsp45I	GTSAC	3 cut(s)	98, 129, 1024
TspDTI	ATGAA	3 cut(s)	183, 1022, 1145
TspGWI	ACGGA	1 cut(s)	1010
TspRI	CASTG	3 cut(s)	131, 937, 1129
Van91I	CCANNNNNTGG	1 cut(s)	1224
VpaK11BI	GGWCC	2 cut(s)	11, 948
XapI	RAATTY	1 cut(s)	700
XceI	RCATGY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1159
XmiI	GTMKAC	3 cut(s)	303, 906, 992
XspI	CTAG	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.