Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002407.1

Orthogroup ID

OG0000982

Physical Location & Seq

Genomic Coordinates Reverse (-)

73887 .. 74461

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002407.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgttcataaccactaccactgccgtcgacgcctccactcccaacctcaccacctgtccctaccacgcctcctcctcaacacacccctatttggtctcaaactttcccccaatatcttctccaatccaagttagggttctgtatatggatcctggaccaacatcaagatcggttcttttcggatttcttctacttgtctctttgattctacatgtttctggcaacttggtcttcctggcgagtcacaagtttcagggccgccgcaggcagtggtcacttagtgagttaaaagcccacgacgctcggcgccacggccggaacctcctatatgtttcttcatcagctgtggatctgaagttgggcggtaacaaccacccttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

127

Amino Acids

13.97

Weight (kDa)

10.12

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02740 AT3G02740
fragaria_vesca	FvH4_2g24030 FvH4_6g00390 FvH4_6g00390 FvH4_6g00390
malus_domestica	MD03G1269400.v1.1 MD03G1269600.v1.1 MD04G1246000.v1.1 MD11G1290400.v1.1 MD12G1264000.v1.1
prunus_persica	Prupe.6G362400_v2.0.a1 Prupe.6G362400_v2.0.a1 Prupe.8G245700_v2.0.a1
pyrus_communis	pycom03g21490 pycom04g21690 pycom11g25770
rosa_chinensis	RchiOBHm_Chr2g0165041 RchiOBHm_Chr3g0447731 RchiOBHm_Chr5g0038071 RchiOBHm_Chr6g0291731
rosa_laevigata	RLG00000012088 RLG00000023499 RLG00000025975 RLG00000027765 RLG00000033833 RLG00000033834
rosa_multiflora	Rmu_sc0002407.1_g000014
rosa_roxburghii	Rroxscaffold_1G00042870 Rroxscaffold_3G00230620 Rroxscaffold_6G00425930 Rroxscaffold_7G00175790
rosa_rugosa	Rorug02G0033100 Rorug02G0605200 Rorug06G0221400 Rorug07G0073200
rosa_samantha	Rh1BG276600 Rh1DG307300 Rh2AG078500 Rh2BG591900 Rh2BG592000 Rh2CG562400 Rh2DG077500 Rh3AG004800 Rh3BG004400 Rh3CG004800 Rh3DG004700 Rh4BG233300 Rh5AG258400 Rh5BG261800 Rh5CG293900 Rh5DG270900 Rh6AG333900 Rh6BG341000 Rh6CG347100 Rh6DG334300
rosa_wichuraiana	Rw2G006790 Rw2G048190 Rw3G000350 Rw5G024160 Rw6G014720 Rw6G029070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	3 cut(s)	259, 262, 363
AclWI	GGATC	3 cut(s)	143, 156, 357
AcoI	YGGCCR	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	2 cut(s)	30, 307
AdeI	CACNNNGTG	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	91, 133
AflIII	ACRYGT	1 cut(s)	211
AjnI	CCWGG	2 cut(s)	151, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	1 cut(s)	344
AluI	AGCT	1 cut(s)	344
Alw26I	GTCTC	2 cut(s)	100, 202
AlwI	GGATC	3 cut(s)	143, 156, 357
AoxI	GGCC	2 cut(s)	256, 313
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	155, 256
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	223
BceAI	ACGGC	2 cut(s)	8, 328
BciT130I	CCWGG	2 cut(s)	153, 236
BcoDI	GTCTC	2 cut(s)	100, 202
BfaI	CTAG	1 cut(s)	382
BfoI	RGCGCY	1 cut(s)	310
BisI	GCNGC	2 cut(s)	259, 262
BlsI	GCNGC	2 cut(s)	260, 263
Bme1390I	CCNGG	2 cut(s)	153, 236
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	155, 256
BmiI	GGNNCC	3 cut(s)	150, 308, 320
BmrFI	CCNGG	2 cut(s)	153, 236
BpiI	GAAGAC	1 cut(s)	223
BsaHI	GRCGYC	2 cut(s)	30, 307
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	310
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 56, 83, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 133
BseBI	CCWGG	2 cut(s)	153, 236
BseDI	CCNNGG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	91, 133
BseRI	GAGGAG	2 cut(s)	61, 64
BseX3I	CGGCCG	1 cut(s)	313
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	258, 315
BshNI	GGYRCC	1 cut(s)	306
BsiEI	CGRYCG	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	91, 133
BsmAI	GTCTC	2 cut(s)	100, 202
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	258, 315
Bso31I	GGTCTC	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	148, 167, 349
BspACI	CCGC	3 cut(s)	259, 262, 363
BspANI	GGCC	2 cut(s)	258, 315
BspLI	GGNNCC	3 cut(s)	150, 308, 320
BspPI	GGATC	3 cut(s)	143, 156, 357
BspT107I	GGYRCC	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	3 cut(s)	148, 167, 349
BssNI	GRCGYC	2 cut(s)	30, 307
Bst2UI	CCWGG	2 cut(s)	153, 236
BstACI	GRCGYC	2 cut(s)	30, 307
BstC8I	GCNNGC	1 cut(s)	266
BstDEI	CTNAG	1 cut(s)	278
BstDSI	CCRYGG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	3 cut(s)	151, 170, 352
BstMAI	GTCTC	2 cut(s)	100, 202
BstMBI	GATC	3 cut(s)	148, 167, 349
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 299
BstNI	CCWGG	2 cut(s)	153, 236
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	151, 234
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	2 cut(s)	148, 349
BstYI	RGATCY	2 cut(s)	148, 349
BstZI	CGGCCG	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	258, 315
BtgI	CCRYGG	1 cut(s)	310
BtsI	GCAGTG	2 cut(s)	18, 275
BtsIMutI	CAGTG	2 cut(s)	18, 275
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	155, 256
CseI	GACGC	2 cut(s)	38, 308
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	4 cut(s)	258, 293, 315, 344
CviKI_1	RGCY	4 cut(s)	258, 293, 315, 344
DdeI	CTNAG	1 cut(s)	278
DinI	GGCGCC	1 cut(s)	308
DpnI	GATC	3 cut(s)	150, 169, 351
DpnII	GATC	3 cut(s)	148, 167, 349
DraIII	CACNNNGTG	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	313
EagI	CGGCCG	1 cut(s)	313
EclXI	CGGCCG	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	155
Eco52I	CGGCCG	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	151, 234
EgeI	GGCGCC	1 cut(s)	308
EheI	GGCGCC	1 cut(s)	308
FaeI	CATG	1 cut(s)	215
FaiI	YATR	6 cut(s)	8, 144, 146, 213, 328, 330
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	259, 262
Fsp4HI	GCNGC	2 cut(s)	259, 262
FspBI	CTAG	1 cut(s)	382
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	2 cut(s)	259, 262
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	2 cut(s)	258, 315
HapII	CCGG	1 cut(s)	316
HgaI	GACGC	2 cut(s)	38, 308
HhaI	GCGC	1 cut(s)	309
Hin1I	GRCGYC	2 cut(s)	30, 307
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	2 cut(s)	205, 241
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	182, 354
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	3 cut(s)	29, 32, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 299
HpyF3I	CTNAG	1 cut(s)	278
Hsp92I	GRCGYC	2 cut(s)	30, 307
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	307
KasI	GGCGCC	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	148, 167, 349
LpnPI	CCDG	9 cut(s)	67, 138, 165, 204, 221, 239, 248, 250, 329
MaeI	CTAG	1 cut(s)	382
MaeIII	GTNAC	3 cut(s)	242, 273, 365
MalI	GATC	3 cut(s)	150, 169, 351
MboI	GATC	3 cut(s)	148, 167, 349
MboII	GAAGA	4 cut(s)	108, 179, 223, 327
MflI	RGATCY	2 cut(s)	148, 349
Mly113I	GGCGCC	1 cut(s)	307
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	6 cut(s)	43, 56, 79, 82, 85, 332
MseI	TTAA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	2 cut(s)	153, 236
MvaI	CCWGG	2 cut(s)	153, 236
MwoI	GCNNNNNNNGC	2 cut(s)	29, 299
NarI	GGCGCC	1 cut(s)	307
NdeII	GATC	3 cut(s)	148, 167, 349
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	3 cut(s)	150, 308, 320
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	2 cut(s)	242, 273
NspI	RCATGY	1 cut(s)	215
PciI	ACATGT	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	205
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	260, 263
PleI	GAGTC	1 cut(s)	249
PluTI	GGCGCC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	249
PscI	ACATGT	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	151, 234
PspGI	CCWGG	2 cut(s)	151, 234
PspN4I	GGNNCC	3 cut(s)	150, 308, 320
PspPI	GGNCC	2 cut(s)	155, 256
PsuI	RGATCY	2 cut(s)	148, 349
PvuII	CAGCTG	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	2 cut(s)	259, 262
Sau3AI	GATC	3 cut(s)	148, 167, 349
Sau96I	GGNCC	2 cut(s)	155, 256
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	153, 236
SetI	ASST	4 cut(s)	48, 56, 324, 346
SfoI	GGCGCC	1 cut(s)	308
SgrDI	CGTCGACG	1 cut(s)	26
SinI	GGWCC	1 cut(s)	155
SsiI	CCGC	3 cut(s)	259, 262, 363
SspDI	GGCGCC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	151, 234
TaqI	TCGA	1 cut(s)	27
TauI	GCSGC	2 cut(s)	261, 264
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	2 cut(s)	25, 275
TseFI	GTSAC	2 cut(s)	242, 273
Tsp45I	GTSAC	2 cut(s)	242, 273
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	25, 275
VpaK11BI	GGWCC	1 cut(s)	155
XceI	RCATGY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.