Rw2G006790

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
6579256 .. 6582644
3389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006790.1

Sequence Viewer

Length: 1380 bp
ATGGAACCAAGAGGCCTAGGGTACAGGTTGGGTGGTTTCGTTACGGTGGTGGTGGTGCTTGTTTCGGCATTGGTCATTAATGTTTCCGGTAACTTGGTTTTCCCGGTGAGCCATAAGTTTAATGGTAGACACGGAGCGTCGTTGAGTGAACTCAAAGCCCATGATCATCGCCGTCATGCTAGATTGCTCGGGGCCACCCAGAATGCTGTGGATATGTTTTTGGGCGGCAGCACTGAGGAAACTAGGCTCTACTTCACTAAACTTGGGATTGGGAATCCTTCACACGACTATTACTTGCAAATTGATACCGGAAGTAATCTATTTTGGGTGAGTTGCGCTGAGTGCGGCAAAGGCTGCCCTGACAGATCTGAACTCACTGGTGTGGTGTCTTGTGGTGATAACTTTTGCACTTCCCCATCCATAAAATTAATCTCTGATTGCAAGCCAGACGAGAAATGCAACTACCATCTTCAATATGAAGGTAAAGATAAAACTTCCGGATACTTTGTCAAGGATGATGTGCAATTTCAGAAAGCCAGCGGGAACTTTCAAACATCCTCCACTAGTGGATCTGTAATATTCGGGTGCGGGACTGAACAATCTGGCTCGATAAATGACCCCAATGGAGCACTTTCCGGGGTAATTGGTTTTGACCAGGACAATATAACCATGCTTTCACAGCTAGCGGCCGCAGGAAGGGTGAGGAATAAATTTGCACACTGCTTGGATAACACGAAACAATCGCAAGGTGGTGGAATCTGGGCTATAGGAGAAGTCGTCGAACCCAAAATGATGCACACATCACCTATCGTACCAAATCAGACTCGTTACAATATTGTGGTGGAGAAAATTGAGGTTGGAAGTGATGCCATAGAGCTTCCTACTAGTGGTGGTGGTGTTTTGGATGAAACATCTGGCAGCAATTCAGACCAAATTATTGCATTTTTTGATAGTGGTACAACATTTGCTCATTTACCACCAAAGTTGCGTGAACCAATAGTGAAGAAGTACTCATGTTTCAAATATTCCAAAAACATTGATGAGAAGTTTCCTATTGTCAAGTTCACTTTCAAGAATTCCGCTTCATTGTGGGTGTATCCTCATGATTATCTGTATGAAACGGAAGAGGGTGCCTGGTGTCATGGTTGGATGAAAATGATTGCGGAAGACCCCGACATTATTCTGGGAGATATGACGCTTTCGAATAAGTTAGTTGTATACGATCTTGAAAACCAGGTCCTTGGGTGGGCTGATCACAACTGTTCTTCAAGCATAAAAGTGAAAGATGACAAGTCGGGGTCAGACTACTCTGTTCAGTACCACAATCTTGCTTCTTCAGATGCTTCCAGCCCAAAACTACTGATGTCATTCTGGACTTAG

Protein Analysis

459

Amino Acids

50.28

Weight (kDa)

5.7

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 84 - 257 3.1e-34 Xylanase inhibitor N-terminal
Asp PF00026 84 - 418 6.3e-19 Eukaryotic aspartyl protease
TAXi_C PF14541 331 - 417 5.1e-12 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1130
AccI GTMKAC 2 cut(s) 127, 1218
AccIII TCCGGA 1 cut(s) 497
AciI CCGC 8 cut(s) 225, 345, 540, 588, 686, 690, 1080, 1163
AclWI GGATC 1 cut(s) 577
AcoI YGGCCR 1 cut(s) 687
AcsI RAATTY 2 cut(s) 710, 1075
AcuI CTGAAG 1 cut(s) 1320
AfaI GTAC 5 cut(s) 23, 813, 958, 1010, 1319
AfiI CCNNNNNNNGG 3 cut(s) 696, 887, 1246
AgsI TTSAA 6 cut(s) 473, 551, 1021, 1072, 1229, 1269
AhlI ACTAGT 2 cut(s) 563, 884
AjnI CCWGG 3 cut(s) 654, 1133, 1233
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 2 cut(s) 682, 877
AluI AGCT 2 cut(s) 682, 877
Alw21I GWGCWC 1 cut(s) 631
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 497
AoxI GGCC 3 cut(s) 13, 192, 687
ApeKI GCWGC 3 cut(s) 228, 354, 918
ApoI RAATTY 2 cut(s) 710, 1075
AseI ATTAAT 2 cut(s) 78, 428
AspA2I CCTAGG 1 cut(s) 16
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 192, 1237
AsuC2I CCSGG 2 cut(s) 104, 637
AsuHPI GGTGA 5 cut(s) 118, 340, 407, 712, 795
AsuII TTCGAA 1 cut(s) 1202
AsuNHI GCTAGC 1 cut(s) 682
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 1237
AvrII CCTAGG 1 cut(s) 16
BanI GGYRCC 1 cut(s) 1130
BbsI GAAGAC 1 cut(s) 1173
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 3 cut(s) 240, 341, 930
BccI CCATC 2 cut(s) 424, 474
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 3 cut(s) 656, 1135, 1235
BciVI GTATCC 2 cut(s) 494, 1107
BclI TGATCA 2 cut(s) 163, 1252
BcnI CCSGG 2 cut(s) 104, 637
BcuI ACTAGT 2 cut(s) 563, 884
BfaI CTAG 6 cut(s) 17, 180, 243, 564, 683, 885
BfmI CTRYAG 1 cut(s) 765
BfuI GTATCC 2 cut(s) 494, 1107
BglII AGATCT 1 cut(s) 365
BisI GCNGC 7 cut(s) 226, 229, 346, 355, 687, 690, 919
BlnI CCTAGG 1 cut(s) 16
BlsI GCNGC 7 cut(s) 227, 230, 347, 356, 688, 691, 920
BmcAI AGTACT 1 cut(s) 1010
Bme1390I CCNGG 5 cut(s) 104, 637, 656, 1135, 1235
Bme18I GGWCC 1 cut(s) 1237
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 192, 1237
BmiI GGNNCC 3 cut(s) 6, 193, 1132
BmrFI CCNGG 5 cut(s) 104, 637, 656, 1135, 1235
BmsI GCATC 3 cut(s) 783, 856, 1330
BmtI GCTAGC 1 cut(s) 686
BpiI GAAGAC 1 cut(s) 1173
Bpu14I TTCGAA 1 cut(s) 1202
BpuMI CCSGG 2 cut(s) 104, 637
BsaJI CCNNGG 3 cut(s) 16, 636, 1240
BsaWI WCCGGW 3 cut(s) 86, 308, 497
BsaXI ACNNNNNCTCC 2 cut(s) 762, 792
Bsc4I CCNNNNNNNGG 3 cut(s) 696, 887, 1246
Bse1I ACTGG 1 cut(s) 382
BseAI TCCGGA 1 cut(s) 497
BseBI CCWGG 3 cut(s) 656, 1135, 1235
BseDI CCNNGG 3 cut(s) 16, 636, 1240
BseGI GGATG 5 cut(s) 416, 520, 554, 910, 1155
BseLI CCNNNNNNNGG 3 cut(s) 696, 887, 1246
BseMII CTCAG 2 cut(s) 225, 330
BseNI ACTGG 1 cut(s) 382
BseX3I CGGCCG 1 cut(s) 687
BseXI GCAGC 3 cut(s) 240, 341, 930
Bsh1285I CGRYCG 1 cut(s) 690
BshFI GGCC 3 cut(s) 15, 194, 689
BshNI GGYRCC 1 cut(s) 1130
BsiEI CGRYCG 1 cut(s) 690
BsiHKAI GWGCWC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 5 cut(s) 87, 104, 309, 498, 636
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 3 cut(s) 696, 887, 1246
BsmFI GGGAC 1 cut(s) 604
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 3 cut(s) 15, 194, 689
BsoBI CYCGRG 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 1202
Bsp1286I GDGCHC 1 cut(s) 631
Bsp13I TCCGGA 1 cut(s) 497
Bsp143I GATC 5 cut(s) 163, 365, 569, 1222, 1252
BspACI CCGC 8 cut(s) 225, 345, 540, 588, 686, 690, 1080, 1163
BspANI GGCC 3 cut(s) 15, 194, 689
BspCNI CTCAG 2 cut(s) 226, 331
BspEI TCCGGA 1 cut(s) 497
BspHI TCATGA 1 cut(s) 1102
BspLI GGNNCC 3 cut(s) 6, 193, 1132
BspOI GCTAGC 1 cut(s) 686
BspPI GGATC 1 cut(s) 577
BspT104I TTCGAA 1 cut(s) 1202
BspT107I GGYRCC 1 cut(s) 1130
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 3 cut(s) 16, 636, 1240
BssMI GATC 5 cut(s) 163, 365, 569, 1222, 1252
BssNAI GTATAC 1 cut(s) 1219
BssT1I CCWWGG 2 cut(s) 16, 1240
Bst1107I GTATAC 1 cut(s) 1219
Bst2UI CCWGG 3 cut(s) 656, 1135, 1235
Bst4CI ACNGT 2 cut(s) 46, 1262
Bst6I CTCTTC 1 cut(s) 1119
BstAPI GCANNNNNTGC 1 cut(s) 354
BstBI TTCGAA 1 cut(s) 1202
BstC8I GCNNGC 3 cut(s) 443, 538, 684
BstDEI CTNAG 3 cut(s) 234, 339, 1377
BstF5I GGATG 5 cut(s) 416, 520, 554, 910, 1155
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 5 cut(s) 166, 368, 572, 1225, 1255
BstMBI GATC 5 cut(s) 163, 365, 569, 1222, 1252
BstMCI CGRYCG 1 cut(s) 690
BstMWI GCNNNNNNNGC 4 cut(s) 342, 351, 354, 679
BstNI CCWGG 3 cut(s) 656, 1135, 1235
BstSCI CCNGG 5 cut(s) 102, 635, 654, 1133, 1233
BstSFI CTRYAG 1 cut(s) 765
BstV1I GCAGC 3 cut(s) 240, 341, 930
BstV2I GAAGAC 1 cut(s) 1173
BstX2I RGATCY 2 cut(s) 365, 569
BstXI CCANNNNNNTGG 1 cut(s) 1241
BstYI RGATCY 2 cut(s) 365, 569
BstZ17I GTATAC 1 cut(s) 1219
BstZI CGGCCG 1 cut(s) 687
BsuI GTATCC 2 cut(s) 494, 1107
BsuRI GGCC 3 cut(s) 15, 194, 689
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 5 cut(s) 416, 520, 554, 910, 1155
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 3 cut(s) 231, 375, 718
Cac8I GCNNGC 3 cut(s) 443, 538, 684
CciI TCATGA 1 cut(s) 1102
CciNI GCGGCCGC 1 cut(s) 687
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 192, 1237
CseI GACGC 2 cut(s) 126, 1204
CsiI ACCWGGT 1 cut(s) 1233
Csp6I GTAC 5 cut(s) 22, 812, 957, 1009, 1318
CspCI CAANNNNNGTGG 2 cut(s) 966, 1001
CviAII CATG 6 cut(s) 161, 176, 670, 1014, 1103, 1142
CviQI GTAC 5 cut(s) 22, 812, 957, 1009, 1318
DdeI CTNAG 3 cut(s) 234, 339, 1377
DpnI GATC 5 cut(s) 165, 367, 571, 1224, 1254
DpnII GATC 5 cut(s) 163, 365, 569, 1222, 1252
EaeI YGGCCR 1 cut(s) 687
EagI CGGCCG 1 cut(s) 687
Eam1104I CTCTTC 1 cut(s) 1119
EarI CTCTTC 1 cut(s) 1119
EclXI CGGCCG 1 cut(s) 687
Eco130I CCWWGG 2 cut(s) 16, 1240
Eco147I AGGCCT 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 1237
Eco52I CGGCCG 1 cut(s) 687
Eco57I CTGAAG 1 cut(s) 1320
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 1237
EcoRI GAATTC 1 cut(s) 1075
EcoRII CCWGG 3 cut(s) 654, 1133, 1233
EcoT14I CCWWGG 2 cut(s) 16, 1240
ErhI CCWWGG 2 cut(s) 16, 1240
FaeI CATG 6 cut(s) 164, 179, 673, 1017, 1106, 1145
FaqI GGGAC 1 cut(s) 604
FatI CATG 6 cut(s) 160, 175, 669, 1013, 1102, 1141
FauI CCCGC 2 cut(s) 533, 581
FbaI TGATCA 2 cut(s) 163, 1252
FblI GTMKAC 2 cut(s) 127, 1218
Fnu4HI GCNGC 7 cut(s) 226, 229, 346, 355, 687, 690, 919
FokI GGATG 5 cut(s) 403, 527, 541, 917, 1162
Fsp4HI GCNGC 7 cut(s) 226, 229, 346, 355, 687, 690, 919
FspBI CTAG 6 cut(s) 17, 180, 243, 564, 683, 885
GlaI GCGC 1 cut(s) 337
GluI GCNGC 7 cut(s) 226, 229, 346, 355, 687, 690, 919
HaeIII GGCC 3 cut(s) 15, 194, 689
HapII CCGG 5 cut(s) 87, 104, 309, 498, 636
HgaI GACGC 2 cut(s) 126, 1204
HhaI GCGC 1 cut(s) 338
Hin1II CATG 6 cut(s) 164, 179, 673, 1017, 1106, 1145
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 3 cut(s) 274, 756, 823
HpaII CCGG 5 cut(s) 87, 104, 309, 498, 636
HphI GGTGA 5 cut(s) 118, 340, 407, 712, 795
Hpy166II GTNNAC 5 cut(s) 128, 149, 992, 1065, 1219
Hpy188I TCNGA 7 cut(s) 370, 436, 531, 822, 928, 1303, 1339
Hpy188III TCNNGA 5 cut(s) 498, 1072, 1103, 1226, 1372
Hpy8I GTNNAC 5 cut(s) 128, 149, 992, 1065, 1219
Hpy99I CGWCG 2 cut(s) 142, 782
HpyAV CCTTC 3 cut(s) 288, 473, 690
HpyCH4III ACNGT 2 cut(s) 46, 1262
HpyCH4V TGCA 8 cut(s) 298, 408, 441, 459, 523, 716, 796, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 342, 351, 354, 679
HpyF3I CTNAG 3 cut(s) 234, 339, 1377
Hsp92II CATG 6 cut(s) 164, 179, 673, 1017, 1106, 1145
HspAI GCGC 1 cut(s) 336
Kpn2I TCCGGA 1 cut(s) 497
Ksp22I TGATCA 2 cut(s) 163, 1252
Kzo9I GATC 5 cut(s) 163, 365, 569, 1222, 1252
LmnI GCTCC 2 cut(s) 134, 626
Lsp1109I GCAGC 3 cut(s) 240, 341, 930
LweI GCATC 3 cut(s) 783, 856, 1330
MabI ACCWGGT 1 cut(s) 1233
MaeI CTAG 6 cut(s) 17, 180, 243, 564, 683, 885
MaeIII GTNAC 3 cut(s) 40, 89, 827
MalI GATC 5 cut(s) 165, 367, 571, 1224, 1254
MboI GATC 5 cut(s) 163, 365, 569, 1222, 1252
MboII GAAGA 6 cut(s) 461, 1015, 1136, 1178, 1257, 1326
MflI RGATCY 2 cut(s) 365, 569
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 9 cut(s) 300, 425, 524, 642, 710, 849, 922, 933, 1075
MlyI GAGTC 1 cut(s) 817
MmeI TCCRAC 2 cut(s) 838, 1127
MnlI CCTC 7 cut(s) 5, 229, 568, 696, 847, 1110, 1120
MroI TCCGGA 1 cut(s) 497
MseI TTAA 3 cut(s) 78, 120, 428
MslI CAYNNNNRTG 2 cut(s) 380, 1277
MspA1I CMGCKG 1 cut(s) 540
MspI CCGG 5 cut(s) 87, 104, 309, 498, 636
MspR9I CCNGG 5 cut(s) 104, 637, 656, 1135, 1235
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 3 cut(s) 656, 1135, 1235
MwoI GCNNNNNNNGC 4 cut(s) 342, 351, 354, 679
NciI CCSGG 2 cut(s) 104, 637
NdeII GATC 5 cut(s) 163, 365, 569, 1222, 1252
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 6 cut(s) 164, 179, 673, 1017, 1106, 1145
NlaIV GGNNCC 3 cut(s) 6, 193, 1132
NotI GCGGCCGC 1 cut(s) 687
NspV TTCGAA 1 cut(s) 1202
OliI CACNNNNGTG 1 cut(s) 380
PagI TCATGA 1 cut(s) 1102
PceI AGGCCT 1 cut(s) 15
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 274, 756
PkrI GCNGC 7 cut(s) 227, 230, 347, 356, 688, 691, 920
PleI GAGTC 1 cut(s) 817
PpsI GAGTC 1 cut(s) 817
PpuMI RGGWCCY 1 cut(s) 1237
PshBI ATTAAT 2 cut(s) 78, 428
Psp5II RGGWCCY 1 cut(s) 1237
Psp6I CCWGG 3 cut(s) 654, 1133, 1233
PspGI CCWGG 3 cut(s) 654, 1133, 1233
PspN4I GGNNCC 3 cut(s) 6, 193, 1132
PspPI GGNCC 2 cut(s) 192, 1237
PspPPI RGGWCCY 1 cut(s) 1237
PsuI RGATCY 2 cut(s) 365, 569
RsaI GTAC 5 cut(s) 23, 813, 958, 1010, 1319
RsaNI GTAC 5 cut(s) 22, 812, 957, 1009, 1318
RseI CAYNNNNRTG 2 cut(s) 380, 1277
SaqAI TTAA 3 cut(s) 78, 120, 428
SatI GCNGC 7 cut(s) 226, 229, 346, 355, 687, 690, 919
Sau3AI GATC 5 cut(s) 163, 365, 569, 1222, 1252
Sau96I GGNCC 2 cut(s) 192, 1237
ScaI AGTACT 1 cut(s) 1010
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 5 cut(s) 104, 637, 656, 1135, 1235
SduI GDGCHC 1 cut(s) 631
SetI ASST 8 cut(s) 29, 484, 684, 751, 808, 858, 879, 1239
SexAI ACCWGGT 1 cut(s) 1233
SfaNI GCATC 3 cut(s) 783, 856, 1330
SfcI CTRYAG 1 cut(s) 765
SfuI TTCGAA 1 cut(s) 1202
SinI GGWCC 1 cut(s) 1237
SmiMI CAYNNNNRTG 2 cut(s) 380, 1277
SpeI ACTAGT 2 cut(s) 563, 884
Sse9I AATT 9 cut(s) 300, 425, 524, 642, 710, 849, 922, 933, 1075
SseBI AGGCCT 1 cut(s) 15
SsiI CCGC 8 cut(s) 225, 345, 540, 588, 686, 690, 1080, 1163
SspI AATATT 3 cut(s) 579, 835, 1025
SspMI CTAG 6 cut(s) 17, 180, 243, 564, 683, 885
StuI AGGCCT 1 cut(s) 15
StyD4I CCNGG 5 cut(s) 102, 635, 654, 1133, 1233
StyI CCWWGG 2 cut(s) 16, 1240
TaaI ACNGT 2 cut(s) 46, 1262
TaqI TCGA 3 cut(s) 608, 780, 1202
TasI AATT 9 cut(s) 300, 425, 524, 642, 710, 849, 922, 933, 1075
TatI WGTACW 1 cut(s) 1008
TauI GCSGC 4 cut(s) 228, 348, 689, 692
TfiI GAWTC 2 cut(s) 274, 756
Tru1I TTAA 3 cut(s) 78, 120, 428
Tru9I TTAA 3 cut(s) 78, 120, 428
TscAI CASTG 3 cut(s) 238, 382, 725
TseI GCWGC 3 cut(s) 228, 354, 918
TspDTI ATGAA 5 cut(s) 492, 921, 1074, 1131, 1166
TspGWI ACGGA 2 cut(s) 147, 1136
TspRI CASTG 3 cut(s) 238, 382, 725
VpaK11BI GGWCC 1 cut(s) 1237
VspI ATTAAT 2 cut(s) 78, 428
XapI RAATTY 2 cut(s) 710, 1075
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XmaJI CCTAGG 1 cut(s) 16
XmiI GTMKAC 2 cut(s) 127, 1218
XspI CTAG 6 cut(s) 17, 180, 243, 564, 683, 885
ZrmI AGTACT 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.