Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002927

Physical Location & Seq

Genomic Coordinates Forward (+)

3076781 .. 3079188

Gene Structure 2408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGAGGATCATCAAAACCATCCACAGTACGGTATAGAACAACCATCTTCTCAATTCTCCTCTGATCTCTTCGGCTTCAACCTCGTTTCAGCGCCGGACCAGCACCATCGTCTTCATTTCACCGACCATGAGATAAGTTTATTGCCACGTGGAATACAAGGGCTTACGGTGGCTGGAAACAACAGTAACACTATTACAACGATCCAGAGTGGTGGCTGTGTTGGTGGGTTTAGTGGCTTTACGGACGGCGGAGGAACAGGGAGGTGGCCGAGGCAAGAGACGTTGATGTTGTTGGAGGTCAGATCTCGTCTTGATCACAAGTTCAAAGAAGCTAATCAAAAGGGTCCTCTCTGGGATGAAGTTTCTAGGATTATGTCGGAGGAACATGGATACACTAGGAGTGGCAAGAAGTGTAGAGAGAAGTTCGAGAATCTCTACAAGTACTATAAAAAAACAAAAGAAGGCAAATCCGGTCGGCGACAAGATGGTAAAAACTATAGATTTTTCCGGCAGCTTGAAGCGATATACGGCGAATCCAAAGACTCGGTTTCTTGCTATAACAACACGCAGTTCATAATGACCAATGCTCTTCATAGTAATTTCCGCGCTTCTAACATTCATAACATCGTCCCTCATCATCAGAATCCCTTGATGACCAATACCAATACTCAAAGTCAAAGCCTTAGCATTTCTAACAATTTCAACTCCTCCTCCGATTTGGATCTAACTTCTTCCTCTGAAGGAAACGAAACTACTAAAAGAGAGGGGATGCATTGGAAGGAAAAGATCAAGGAATTCATTGGTGTTCATATGGAGAGGTTGATAGAGAAGCAAGATTTTTGGCTTGAGAAGTTGATGAAGATTGTGGAAGACAAAGAACATCAAAGGATGCTGAGAGAAGAGGAATGGAGAAGGATTGAAGCGGAAAGGATCGATAAGGAACGTTCGTTTTGGACAAAAGAGAGGGAGAGGATTGAAGCTCGGGATGTTGCGGTGATTAATGCCTTGCAGTACTTGACGGGAAGGGCATTGATAAGGCCGGATTCTTCGTCTCCTACAGAGAGGATTAATGGGAATGGAAGCGATAAAATGATGGCTGATAATGAATTTGCTGATGAAGGAAATAAGGGCAAGATGGATAAAAAACAAATGAATAAGAAAAGGAAGGAGAAATGGTCAAGCCACGGAGGGAATCATCCAAGAACCAAAGAGAATATGATGATATACAACAATCAAGAAACTAAGATTAATGATTTTTGTCGAGATGATGACCAATGCCATCATGAAGGTTACTCACCTTCAAACTCCAAGAACGCAGGAACTCCGAGCTGCAGCAATGCCATGGCAGCTAGTACAAAGTGCTTTCCATTGCTTGAAGGAGAAGGAGATCAGAACTTGTGGGAGGGTTATGGTTTGAAGCAAAGGAAAGAAAATAATCATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009909 GO:0010016 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045926 GO:0046620 GO:0046621 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048441 GO:0048442 GO:0048444 GO:0048446 GO:0048464 GO:0048465 GO:0048498 GO:0048519 GO:0048559 GO:0048560 GO:0048580 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090428 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090707 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

481

Amino Acids

55.5

Weight (kDa)

7.69

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	88 - 165	1.1e-11	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10000 AT3G10000 AT5G03680
fragaria_vesca	FvH4_6g17990 FvH4_6g17990 FvH4_7g05970
malus_domestica	MD02G1247700.v1.1 MD07G1068800.v1.1 MD12G1018900.v1.1 MD14G1016900.v1.1
prunus_persica	Prupe.2G086500_v2.0.a1 Prupe.7G116400_v2.0.a1
pyrus_communis	pycom02g21160 pycom07g05290 pycom12g01570 pycom14g01450
rosa_chinensis	RchiOBHm_Chr1g0333231 RchiOBHm_Chr3g0472271
rosa_laevigata	RLG00000024094 RLG00000029619
rosa_multiflora	Rmu_sc0001214.1_g000051 Rmu_sc0008192.1_g000003
rosa_roxburghii	Rroxscaffold_4G00317680 Rroxscaffold_6G00409120
rosa_rugosa	Rorug01G0108100 Rorug03G0123400
rosa_samantha	Rh1AG131100 Rh1BG100500 Rh1CG125000 Rh1DG136500 Rh3AG175700 Rh3BG201200 Rh3CG192500 Rh3CG199600 Rh3CG199700 Rh3DG173800
rosa_wichuraiana	Rw1G010840 Rw3G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	606
AciI	CCGC	4 cut(s)	249, 604, 923, 992
AclI	AACGTT	1 cut(s)	943
AclWI	GGATC	4 cut(s)	15, 196, 729, 938
AcoI	YGGCCR	1 cut(s)	266
AcsI	RAATTY	2 cut(s)	794, 1106
AcuI	CTGAAG	1 cut(s)	759
AcvI	CACGTG	1 cut(s)	149
AfaI	GTAC	4 cut(s)	29, 443, 1013, 1354
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	9 cut(s)	79, 325, 518, 703, 920, 977, 1302, 1376, 1417
AluBI	AGCT	5 cut(s)	332, 514, 980, 1329, 1349
AluI	AGCT	5 cut(s)	332, 514, 980, 1329, 1349
Alw26I	GTCTC	2 cut(s)	272, 1056
AlwI	GGATC	4 cut(s)	15, 196, 729, 938
Ama87I	CYCGRG	1 cut(s)	981
AoxI	GGCC	2 cut(s)	266, 1037
ApeKI	GCWGC	4 cut(s)	511, 1329, 1332, 1346
ApoI	RAATTY	2 cut(s)	794, 1106
AseI	ATTAAT	3 cut(s)	999, 1068, 1248
AspLEI	GCGC	2 cut(s)	94, 608
AspS9I	GGNCC	2 cut(s)	97, 344
AsuHPI	GGTGA	3 cut(s)	112, 1006, 1287
AvaI	CYCGRG	1 cut(s)	981
AvaII	GGWCC	2 cut(s)	97, 344
BbrPI	CACGTG	1 cut(s)	149
BbsI	GAAGAC	2 cut(s)	104, 876
BbvI	GCAGC	4 cut(s)	523, 1316, 1344, 1358
BccI	CCATC	7 cut(s)	27, 52, 114, 479, 1087, 1129, 1287
BceAI	ACGGC	2 cut(s)	262, 544
BciVI	GTATCC	1 cut(s)	383
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	272, 1056
BfaI	CTAG	3 cut(s)	366, 396, 1350
BfmI	CTRYAG	3 cut(s)	496, 1056, 1330
BfoI	RGCGCY	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	383
BglII	AGATCT	1 cut(s)	302
BisI	GCNGC	4 cut(s)	512, 1330, 1333, 1347
BlsI	GCNGC	4 cut(s)	513, 1331, 1334, 1348
BmcAI	AGTACT	2 cut(s)	443, 1013
Bme18I	GGWCC	2 cut(s)	97, 344
BmeT110I	CYCGRG	1 cut(s)	981
BmgT120I	GGNCC	2 cut(s)	97, 344
BmiI	GGNNCC	1 cut(s)	345
BmsI	GCATC	2 cut(s)	759, 879
BpiI	GAAGAC	2 cut(s)	104, 876
Bpu10I	CCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	866
Bsa29I	ATCGAT	1 cut(s)	933
BsaAI	YACGTR	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	720
BsaJI	CCNNGG	3 cut(s)	269, 1183, 1341
BsaWI	WCCGGW	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	695, 725, 1160, 1190
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse3DI	GCAATG	2 cut(s)	1342, 1367
Bse8I	GATNNNNATC	1 cut(s)	720
BseCI	ATCGAT	1 cut(s)	933
BseDI	CCNNGG	3 cut(s)	269, 1183, 1341
BseGI	GGATG	6 cut(s)	19, 361, 774, 894, 991, 1195
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	2 cut(s)	1342, 1367
BseMII	CTCAG	1 cut(s)	884
BseRI	GAGGAG	3 cut(s)	49, 697, 700
BseXI	GCAGC	4 cut(s)	523, 1316, 1344, 1358
Bsh1236I	CGCG	1 cut(s)	606
Bsh1285I	CGRYCG	1 cut(s)	475
BshFI	GGCC	2 cut(s)	268, 1039
BshVI	ATCGAT	1 cut(s)	933
BsiEI	CGRYCG	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	981
BsiSI	CCGG	4 cut(s)	95, 471, 508, 1040
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	272, 1056
BsmBI	CGTCTC	2 cut(s)	272, 1056
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	268, 1039
BsoBI	CYCGRG	1 cut(s)	981
Bsp143I	GATC	9 cut(s)	7, 64, 201, 302, 313, 721, 786, 930, 1387
Bsp19I	CCATGG	1 cut(s)	1341
BspACI	CCGC	4 cut(s)	249, 604, 923, 992
BspANI	GGCC	2 cut(s)	268, 1039
BspCNI	CTCAG	1 cut(s)	885
BspDI	ATCGAT	1 cut(s)	933
BspFNI	CGCG	1 cut(s)	606
BspHI	TCATGA	1 cut(s)	1282
BspLI	GGNNCC	1 cut(s)	345
BspMAI	CTGCAG	1 cut(s)	1334
BspPI	GGATC	4 cut(s)	15, 196, 729, 938
BspQI	GCTCTTC	1 cut(s)	594
BsrDI	GCAATG	2 cut(s)	1342, 1367
BssECI	CCNNGG	3 cut(s)	269, 1183, 1341
BssMI	GATC	9 cut(s)	7, 64, 201, 302, 313, 721, 786, 930, 1387
BssT1I	CCWWGG	1 cut(s)	1341
Bst4CI	ACNGT	4 cut(s)	27, 32, 169, 185
Bst6I	CTCTTC	3 cut(s)	74, 594, 894
BstBAI	YACGTR	1 cut(s)	149
BstDEI	CTNAG	3 cut(s)	683, 893, 1242
BstDSI	CCRYGG	2 cut(s)	1183, 1341
BstF5I	GGATG	6 cut(s)	19, 361, 774, 894, 991, 1195
BstFNI	CGCG	1 cut(s)	606
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	94, 608
BstKTI	GATC	9 cut(s)	10, 67, 204, 305, 316, 724, 789, 933, 1390
BstMAI	GTCTC	2 cut(s)	272, 1056
BstMBI	GATC	9 cut(s)	7, 64, 201, 302, 313, 721, 786, 930, 1387
BstMCI	CGRYCG	1 cut(s)	475
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 1346
BstSFI	CTRYAG	3 cut(s)	496, 1056, 1330
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	4 cut(s)	523, 1316, 1344, 1358
BstV2I	GAAGAC	2 cut(s)	104, 876
BstX2I	RGATCY	2 cut(s)	302, 721
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	2 cut(s)	302, 721
Bsu15I	ATCGAT	1 cut(s)	933
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	2 cut(s)	268, 1039
BsuTUI	ATCGAT	1 cut(s)	933
BtgI	CCRYGG	2 cut(s)	1183, 1341
BtsCI	GGATG	6 cut(s)	19, 361, 774, 894, 991, 1195
CciI	TCATGA	1 cut(s)	1282
CfoI	GCGC	2 cut(s)	94, 608
Cfr13I	GGNCC	2 cut(s)	97, 344
ClaI	ATCGAT	1 cut(s)	933
Csp6I	GTAC	4 cut(s)	28, 442, 1012, 1353
CviAII	CATG	4 cut(s)	128, 386, 1283, 1342
CviQI	GTAC	4 cut(s)	28, 442, 1012, 1353
DdeI	CTNAG	3 cut(s)	683, 893, 1242
DpnI	GATC	9 cut(s)	9, 66, 203, 304, 315, 723, 788, 932, 1389
DpnII	GATC	9 cut(s)	7, 64, 201, 302, 313, 721, 786, 930, 1387
EaeI	YGGCCR	1 cut(s)	266
Eam1104I	CTCTTC	3 cut(s)	74, 594, 894
EarI	CTCTTC	3 cut(s)	74, 594, 894
EciI	GGCGGA	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	1341
Eco47I	GGWCC	2 cut(s)	97, 344
Eco57I	CTGAAG	1 cut(s)	759
Eco72I	CACGTG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	981
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	794
EcoT14I	CCWWGG	1 cut(s)	1341
EcoT22I	ATGCAT	1 cut(s)	774
ErhI	CCWWGG	1 cut(s)	1341
Esp3I	CGTCTC	2 cut(s)	272, 1056
FaeI	CATG	4 cut(s)	131, 389, 1286, 1345
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	4 cut(s)	127, 385, 1282, 1341
FauNDI	CATATG	1 cut(s)	810
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	512, 1330, 1333, 1347
FokI	GGATG	6 cut(s)	6, 368, 781, 901, 998, 1182
Fsp4HI	GCNGC	4 cut(s)	512, 1330, 1333, 1347
FspBI	CTAG	3 cut(s)	366, 396, 1350
GlaI	GCGC	2 cut(s)	93, 607
GluI	GCNGC	4 cut(s)	512, 1330, 1333, 1347
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	268, 1039
HapII	CCGG	4 cut(s)	95, 471, 508, 1040
HhaI	GCGC	2 cut(s)	94, 608
Hin1II	CATG	4 cut(s)	131, 389, 1286, 1345
Hin6I	GCGC	2 cut(s)	92, 606
HinP1I	GCGC	2 cut(s)	92, 606
HinfI	GANTC	6 cut(s)	430, 533, 542, 643, 1043, 1192
HpaII	CCGG	4 cut(s)	95, 471, 508, 1040
HphI	GGTGA	3 cut(s)	112, 1006, 1287
Hpy188I	TCNGA	8 cut(s)	64, 302, 379, 642, 715, 739, 1326, 1392
Hpy188III	TCNNGA	7 cut(s)	205, 311, 427, 983, 1235, 1262, 1283
HpyCH4III	ACNGT	4 cut(s)	27, 32, 169, 185
HpyCH4IV	ACGT	3 cut(s)	148, 281, 943
HpyCH4V	TGCA	3 cut(s)	772, 1009, 1332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 1346
HpyF3I	CTNAG	3 cut(s)	683, 893, 1242
HpySE526I	ACGT	3 cut(s)	148, 281, 943
Hsp92II	CATG	4 cut(s)	131, 389, 1286, 1345
HspAI	GCGC	2 cut(s)	92, 606
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	9 cut(s)	7, 64, 201, 302, 313, 721, 786, 930, 1387
LguI	GCTCTTC	1 cut(s)	594
Lsp1109I	GCAGC	4 cut(s)	523, 1316, 1344, 1358
LweI	GCATC	2 cut(s)	759, 879
MaeI	CTAG	3 cut(s)	366, 396, 1350
MaeII	ACGT	3 cut(s)	148, 281, 943
MaeIII	GTNAC	2 cut(s)	185, 1289
MalI	GATC	9 cut(s)	9, 66, 203, 304, 315, 723, 788, 932, 1389
MboI	GATC	9 cut(s)	7, 64, 201, 302, 313, 721, 786, 930, 1387
MboII	GAAGA	9 cut(s)	39, 61, 104, 581, 723, 871, 881, 911, 1038
MflI	RGATCY	2 cut(s)	302, 721
MluCI	AATT	5 cut(s)	53, 598, 697, 794, 1106
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	2 cut(s)	273, 357
Mph1103I	ATGCAT	1 cut(s)	774
MseI	TTAA	3 cut(s)	999, 1068, 1248
MspI	CCGG	4 cut(s)	95, 471, 508, 1040
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	100, 1346
NcoI	CCATGG	1 cut(s)	1341
NdeI	CATATG	1 cut(s)	810
NdeII	GATC	9 cut(s)	7, 64, 201, 302, 313, 721, 786, 930, 1387
NlaIII	CATG	4 cut(s)	131, 389, 1286, 1345
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	774
PagI	TCATGA	1 cut(s)	1282
PciSI	GCTCTTC	1 cut(s)	594
PfeI	GAWTC	5 cut(s)	430, 533, 643, 1043, 1192
PkrI	GCNGC	4 cut(s)	513, 1331, 1334, 1348
PleI	GAGTC	1 cut(s)	536
PmaCI	CACGTG	1 cut(s)	149
PmlI	CACGTG	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	536
Ppu21I	YACGTR	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	344
PshBI	ATTAAT	3 cut(s)	999, 1068, 1248
Psp1406I	AACGTT	1 cut(s)	943
Psp5II	RGGWCCY	1 cut(s)	344
PspCI	CACGTG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	2 cut(s)	97, 344
PspPPI	RGGWCCY	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	1334
PsuI	RGATCY	2 cut(s)	302, 721
RsaI	GTAC	4 cut(s)	29, 443, 1013, 1354
RsaNI	GTAC	4 cut(s)	28, 442, 1012, 1353
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	3 cut(s)	999, 1068, 1248
SatI	GCNGC	4 cut(s)	512, 1330, 1333, 1347
Sau3AI	GATC	9 cut(s)	7, 64, 201, 302, 313, 721, 786, 930, 1387
Sau96I	GGNCC	2 cut(s)	97, 344
ScaI	AGTACT	2 cut(s)	443, 1013
SchI	GAGTC	1 cut(s)	536
SfaNI	GCATC	2 cut(s)	759, 879
SfcI	CTRYAG	3 cut(s)	496, 1056, 1330
SinI	GGWCC	2 cut(s)	97, 344
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	5 cut(s)	53, 598, 697, 794, 1106
SsiI	CCGC	4 cut(s)	249, 604, 923, 992
SspMI	CTAG	3 cut(s)	366, 396, 1350
StyI	CCWWGG	1 cut(s)	1341
TaaI	ACNGT	4 cut(s)	27, 32, 169, 185
TaiI	ACGT	3 cut(s)	151, 284, 946
TaqI	TCGA	3 cut(s)	426, 933, 1261
TasI	AATT	5 cut(s)	53, 598, 697, 794, 1106
TatI	WGTACW	3 cut(s)	441, 1011, 1352
TfiI	GAWTC	5 cut(s)	430, 533, 643, 1043, 1192
Tru1I	TTAA	3 cut(s)	999, 1068, 1248
Tru9I	TTAA	3 cut(s)	999, 1068, 1248
TseI	GCWGC	4 cut(s)	511, 1329, 1332, 1346
TspGWI	ACGGA	2 cut(s)	257, 1200
VpaK11BI	GGWCC	2 cut(s)	97, 344
VspI	ATTAAT	3 cut(s)	999, 1068, 1248
XapI	RAATTY	2 cut(s)	794, 1106
XspI	CTAG	3 cut(s)	366, 396, 1350
ZrmI	AGTACT	2 cut(s)	443, 1013
Zsp2I	ATGCAT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.