RLG00000029619
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002927
Physical Location & Seq
Forward (+)
41320553 .. 41322509
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029619

Sequence Viewer

Length: 1305 bp
ATGGATGATTATCCAGACCTCCGGCAGCTGATGGCCTCAAGAACACAGCAGTTCGTACAATTCCCAGACCCGTTTTCAGTACGACCTTACAATAATTTTCACCCCAATAGTATCGTTGTAGGTCATGAGGTTAATGCTCATGAATTTTTTGAGTTTGGTTCTGCTGCTTCTGCTGCTGCTAATTTTAGTACAATTATTAGTAATAGTAGTGTTGCTGGTAATCTGAATGGTTCTACTGCTGCTTCGTCTGTTGGTTCGCTGTATGGGTTAGAGTTATTGAATCAGCATGCGTGGAATATTAATGGGAATGATGGATCAGGCAATAACAGCAGATGGCCAAGACAAGAAACTCTTACTCTTCTTGAGATTAGATCCAGTCTCGATTCCAAGTTCAAGGAGACTAATCAGAAAGGTCCATTGTGGGATGAAGTTTCCAGGATAATGAGTGAGGAACATGGATATCACAGGAGTGGGAAGAAATGCAAAGAGAAGTTTGAGAATCTATACAAGTACTACAAGAAAACCAAAGAAGGCAAAGCCGGGAGACAAGATGGGAAGCACTATAGGTTCTTTCGTCAGCTTGAGGCAATATATGGTGACCAAAGTACTACCAATCCCTTGTCCTCAGTTTCGGATCAAACCCATCTAACTGGTACATTAAACCCTACTCTTCTTTATAATCACACCACTGCTACTATTAACCAAGAAAATCAAGAAGTTAAGCTTCGTGCGGAGAGCCTTAGTTTCTCCAACAATTCAACTGACTTAGAAACCTCCAGCTCGGAGAACAATGGAGATGATCTTTCAAATTCAGCTAATGATCACTCTAAAAATGAGAACCAAATTAGGTGTTCAAGGCGTATGAAGAAGACCTGGAAGACACAGGTGGAGGAGTTTGTGAATTCCCAAATGATGAAGGTGATGAAGGCTCAAGAGGGTTGGATGGAGAAGATGTTGAAGACTATTGAAGGTAGAGAAGAGGAGAGGTTGGCTAAAGAAGAAGAATGGAGGAAGCGCGAGGCAGAACGGTTTAATCAACAAGTTCATGAATTCTGGGCTAACGAGAGAGCTTGGGTGGAAACTCGAGATGCTTCAATAATGGAGGCTCTCAGTCAAATTCGAGGAATAGGAACTAACAGTTACAACACCAAAACCAAGGATGAGAGCATGGAACTGCAGCTGACGGATGGAGGTCTATTACCTTCAAGTTCTAATTATATGAATATGAACTCTACCTCCTTTTACATTCCAACGAATGAAGGAGAAAATTTGTGGAACAGGTATGGTGGGAAGCTCAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

435

Amino Acids

49.6

Weight (kDa)

6.06

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 110 - 197 1.1e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 678
AccII CGCG 1 cut(s) 1017
AciI CCGC 1 cut(s) 731
AclWI GGATC 3 cut(s) 322, 366, 642
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 6 cut(s) 143, 808, 901, 1049, 1116, 1267
AfaI GTAC 6 cut(s) 57, 81, 190, 512, 607, 655
AgsI TTSAA 9 cut(s) 280, 394, 759, 807, 855, 958, 968, 1095, 1206
AjnI CCWGG 2 cut(s) 434, 872
AleI CACNNNNGTG 1 cut(s) 468
AloI GAACNNNNNNTCC 2 cut(s) 1220, 1252
AluBI AGCT 8 cut(s) 28, 580, 724, 780, 815, 1070, 1180, 1294
AluI AGCT 8 cut(s) 28, 580, 724, 780, 815, 1070, 1180, 1294
Alw26I GTCTC 3 cut(s) 383, 392, 538
AlwI GGATC 3 cut(s) 322, 366, 642
Ama87I CYCGRG 1 cut(s) 1083
AoxI GGCC 2 cut(s) 33, 335
ApeKI GCWGC 6 cut(s) 25, 164, 173, 176, 239, 1177
ApoI RAATTY 6 cut(s) 143, 808, 901, 1049, 1116, 1267
AseI ATTAAT 1 cut(s) 300
AspLEI GCGC 1 cut(s) 1017
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 3 cut(s) 92, 608, 931
AvaI CYCGRG 1 cut(s) 1083
AvaII GGWCC 1 cut(s) 413
BalI TGGCCA 1 cut(s) 337
BbsI GAAGAC 3 cut(s) 875, 884, 965
BbvI GCAGC 6 cut(s) 37, 151, 160, 163, 226, 1189
BccI CCATC 7 cut(s) 25, 305, 327, 545, 651, 937, 1181
BciT130I CCWGG 2 cut(s) 436, 874
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 1 cut(s) 541
BcoDI GTCTC 3 cut(s) 383, 392, 538
BfmI CTRYAG 2 cut(s) 562, 1175
BisI GCNGC 6 cut(s) 26, 165, 174, 177, 240, 1178
BlpI GCTNAGC 1 cut(s) 1295
BlsI GCNGC 6 cut(s) 27, 166, 175, 178, 241, 1179
BmcAI AGTACT 2 cut(s) 512, 607
Bme1390I CCNGG 3 cut(s) 436, 541, 874
Bme18I GGWCC 1 cut(s) 413
BmeT110I CYCGRG 1 cut(s) 1083
BmgT120I GGNCC 1 cut(s) 413
BmrFI CCNGG 3 cut(s) 436, 541, 874
BmsI GCATC 1 cut(s) 1078
BpiI GAAGAC 3 cut(s) 875, 884, 965
BpmI CTGGAG 1 cut(s) 760
Bpu1102I GCTNAGC 1 cut(s) 1295
BpuEI CTTGAG 4 cut(s) 22, 383, 602, 915
BpuMI CCSGG 1 cut(s) 541
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 1155
BsaXI ACNNNNNCTCC 4 cut(s) 938, 968, 1220, 1250
Bse1I ACTGG 2 cut(s) 375, 655
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 2 cut(s) 436, 874
BseDI CCNNGG 1 cut(s) 1155
BseGI GGATG 5 cut(s) 10, 430, 948, 1165, 1192
BseJI GATNNNNATC 1 cut(s) 9
BseMII CTCAG 2 cut(s) 639, 1123
BseNI ACTGG 2 cut(s) 375, 655
BseRI GAGGAG 2 cut(s) 905, 995
BseXI GCAGC 6 cut(s) 37, 151, 160, 163, 226, 1189
Bsh1236I CGCG 1 cut(s) 1017
BshFI GGCC 2 cut(s) 35, 337
BsiHKCI CYCGRG 1 cut(s) 1083
BsiSI CCGG 2 cut(s) 22, 540
BsmAI GTCTC 3 cut(s) 383, 392, 538
BsnI GGCC 2 cut(s) 35, 337
BsoBI CYCGRG 1 cut(s) 1083
Bsp143I GATC 5 cut(s) 314, 371, 634, 799, 820
Bsp1720I GCTNAGC 1 cut(s) 1295
BspACI CCGC 1 cut(s) 731
BspANI GGCC 2 cut(s) 35, 337
BspCNI CTCAG 2 cut(s) 638, 1122
BspFNI CGCG 1 cut(s) 1017
BspHI TCATGA 3 cut(s) 124, 139, 1045
BspMAI CTGCAG 1 cut(s) 1179
BspPI GGATC 3 cut(s) 322, 366, 642
BsrI ACTGG 2 cut(s) 375, 655
BssECI CCNNGG 1 cut(s) 1155
BssMI GATC 5 cut(s) 314, 371, 634, 799, 820
BssT1I CCWWGG 1 cut(s) 1155
Bst2UI CCWGG 2 cut(s) 436, 874
Bst4CI ACNGT 2 cut(s) 1029, 1139
Bst6I CTCTTC 3 cut(s) 363, 675, 972
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 5 cut(s) 625, 740, 766, 1109, 1295
BstEII GGTNACC 1 cut(s) 596
BstF5I GGATG 5 cut(s) 10, 430, 948, 1165, 1192
BstFNI CGCG 1 cut(s) 1017
BstHHI GCGC 1 cut(s) 1017
BstKTI GATC 5 cut(s) 317, 374, 637, 802, 823
BstMAI GTCTC 3 cut(s) 383, 392, 538
BstMBI GATC 5 cut(s) 314, 371, 634, 799, 820
BstMWI GCNNNNNNNGC 3 cut(s) 170, 173, 327
BstNI CCWGG 2 cut(s) 436, 874
BstNSI RCATGY 1 cut(s) 290
BstPI GGTNACC 1 cut(s) 596
BstSCI CCNGG 3 cut(s) 434, 539, 872
BstSFI CTRYAG 2 cut(s) 562, 1175
BstUI CGCG 1 cut(s) 1017
BstV1I GCAGC 6 cut(s) 37, 151, 160, 163, 226, 1189
BstV2I GAAGAC 3 cut(s) 875, 884, 965
BstX2I RGATCY 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 650
BstYI RGATCY 1 cut(s) 371
BsuRI GGCC 2 cut(s) 35, 337
BtsCI GGATG 5 cut(s) 10, 430, 948, 1165, 1192
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 1 cut(s) 288
CciI TCATGA 3 cut(s) 124, 139, 1045
CfoI GCGC 1 cut(s) 1017
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 6 cut(s) 56, 80, 189, 511, 606, 654
CviAII CATG 6 cut(s) 125, 140, 287, 455, 1046, 1168
CviQI GTAC 6 cut(s) 56, 80, 189, 511, 606, 654
DdeI CTNAG 5 cut(s) 625, 740, 766, 1109, 1295
DpnI GATC 5 cut(s) 316, 373, 636, 801, 822
DpnII GATC 5 cut(s) 314, 371, 634, 799, 820
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 3 cut(s) 363, 675, 972
EarI CTCTTC 3 cut(s) 363, 675, 972
Eco130I CCWWGG 1 cut(s) 1155
Eco32I GATATC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 1083
Eco91I GGTNACC 1 cut(s) 596
EcoO65I GGTNACC 1 cut(s) 596
EcoRI GAATTC 2 cut(s) 901, 1049
EcoRII CCWGG 2 cut(s) 434, 872
EcoRV GATATC 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 1155
ErhI CCWWGG 1 cut(s) 1155
FaeI CATG 6 cut(s) 128, 143, 290, 458, 1049, 1171
FalI AAGNNNNNCTT 4 cut(s) 336, 368, 708, 740
FatI CATG 6 cut(s) 124, 139, 286, 454, 1045, 1167
FbaI TGATCA 1 cut(s) 820
Fnu4HI GCNGC 6 cut(s) 26, 165, 174, 177, 240, 1178
FokI GGATG 5 cut(s) 17, 437, 955, 1172, 1199
Fsp4HI GCNGC 6 cut(s) 26, 165, 174, 177, 240, 1178
GlaI GCGC 1 cut(s) 1016
GluI GCNGC 6 cut(s) 26, 165, 174, 177, 240, 1178
GsuI CTGGAG 1 cut(s) 760
HaeIII GGCC 2 cut(s) 35, 337
HapII CCGG 2 cut(s) 22, 540
HhaI GCGC 1 cut(s) 1017
Hin1II CATG 6 cut(s) 128, 143, 290, 458, 1049, 1171
Hin6I GCGC 1 cut(s) 1015
HinP1I GCGC 1 cut(s) 1015
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 3 cut(s) 280, 383, 499
HpaII CCGG 2 cut(s) 22, 540
HphI GGTGA 3 cut(s) 92, 608, 931
Hpy188I TCNGA 4 cut(s) 225, 408, 634, 784
HpyAV CCTTC 6 cut(s) 524, 910, 919, 962, 1212, 1253
HpyCH4III ACNGT 2 cut(s) 1029, 1139
HpyCH4V TGCA 2 cut(s) 483, 1177
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 173, 327
HpyF3I CTNAG 5 cut(s) 625, 740, 766, 1109, 1295
Hsp92II CATG 6 cut(s) 128, 143, 290, 458, 1049, 1171
HspAI GCGC 1 cut(s) 1015
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 5 cut(s) 314, 371, 634, 799, 820
Lsp1109I GCAGC 6 cut(s) 37, 151, 160, 163, 226, 1189
LweI GCATC 1 cut(s) 1078
MaeIII GTNAC 2 cut(s) 596, 1139
MalI GATC 5 cut(s) 316, 373, 636, 801, 822
MboI GATC 5 cut(s) 314, 371, 634, 799, 820
MflI RGATCY 1 cut(s) 371
MlsI TGGCCA 1 cut(s) 337
MluNI TGGCCA 1 cut(s) 337
MmeI TCCRAC 3 cut(s) 774, 920, 1274
Mox20I TGGCCA 1 cut(s) 337
MscI TGGCCA 1 cut(s) 337
MseI TTAA 6 cut(s) 132, 300, 659, 699, 720, 1032
MslI CAYNNNNRTG 1 cut(s) 468
Msp20I TGGCCA 1 cut(s) 337
MspA1I CMGCKG 2 cut(s) 28, 1180
MspI CCGG 2 cut(s) 22, 540
MspR9I CCNGG 3 cut(s) 436, 541, 874
MvaI CCWGG 2 cut(s) 436, 874
MvnI CGCG 1 cut(s) 1017
MwoI GCNNNNNNNGC 3 cut(s) 170, 173, 327
NciI CCSGG 1 cut(s) 541
NdeII GATC 5 cut(s) 314, 371, 634, 799, 820
NlaIII CATG 6 cut(s) 128, 143, 290, 458, 1049, 1171
NmuCI GTSAC 1 cut(s) 596
NspI RCATGY 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 468
PaeI GCATGC 1 cut(s) 290
PaeR7I CTCGAG 1 cut(s) 1083
PagI TCATGA 3 cut(s) 124, 139, 1045
PfeI GAWTC 3 cut(s) 280, 383, 499
PfoI TCCNGGA 1 cut(s) 434
PkrI GCNGC 6 cut(s) 27, 166, 175, 178, 241, 1179
PshBI ATTAAT 1 cut(s) 300
PsiI TTATAA 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 434, 872
PspEI GGTNACC 1 cut(s) 596
PspGI CCWGG 2 cut(s) 434, 872
PspPI GGNCC 1 cut(s) 413
PstI CTGCAG 1 cut(s) 1179
PsuI RGATCY 1 cut(s) 371
PvuII CAGCTG 2 cut(s) 28, 1180
RsaI GTAC 6 cut(s) 57, 81, 190, 512, 607, 655
RsaNI GTAC 6 cut(s) 56, 80, 189, 511, 606, 654
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 6 cut(s) 132, 300, 659, 699, 720, 1032
SatI GCNGC 6 cut(s) 26, 165, 174, 177, 240, 1178
Sau3AI GATC 5 cut(s) 314, 371, 634, 799, 820
Sau96I GGNCC 1 cut(s) 413
ScaI AGTACT 2 cut(s) 512, 607
ScrFI CCNGG 3 cut(s) 436, 541, 874
SfaNI GCATC 1 cut(s) 1078
SfcI CTRYAG 2 cut(s) 562, 1175
Sfr274I CTCGAG 1 cut(s) 1083
SinI GGWCC 1 cut(s) 413
SlaI CTCGAG 1 cut(s) 1083
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 5 cut(s) 37, 362, 581, 930, 1083
SmoI CTYRAG 5 cut(s) 37, 362, 581, 930, 1083
SphI GCATGC 1 cut(s) 290
SsiI CCGC 1 cut(s) 731
SspI AATATT 1 cut(s) 298
StyD4I CCNGG 3 cut(s) 434, 539, 872
StyI CCWWGG 1 cut(s) 1155
TaaI ACNGT 2 cut(s) 1029, 1139
TaqI TCGA 3 cut(s) 381, 1084, 1120
TatI WGTACW 3 cut(s) 188, 510, 605
TfiI GAWTC 3 cut(s) 280, 383, 499
Tru1I TTAA 6 cut(s) 132, 300, 659, 699, 720, 1032
Tru9I TTAA 6 cut(s) 132, 300, 659, 699, 720, 1032
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 6 cut(s) 25, 164, 173, 176, 239, 1177
Tsp45I GTSAC 1 cut(s) 596
TspGWI ACGGA 1 cut(s) 1199
TspRI CASTG 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 413
VspI ATTAAT 1 cut(s) 300
XapI RAATTY 6 cut(s) 143, 808, 901, 1049, 1116, 1267
XceI RCATGY 1 cut(s) 290
XhoI CTCGAG 1 cut(s) 1083
ZrmI AGTACT 2 cut(s) 512, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.