pycom07g05290
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002927
Physical Location & Seq
Reverse (-)
4559903 .. 4560790
888 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g05290.1

Sequence Viewer

Length: 888 bp
ATGAGTCACTTTCAGCTATTGGTTATTTCATCGATCAATCAGTCGATGGAGAGCCTTAAGAACGAGAATAAAAGTTATGCGACCCAGGTAAAGAAGAAATGGAAAGCAAAGGTGGAGGAGTTTGTGAGCTCACAAATGGGGAAGGTAATAAAGACCCAGGAGGAATTGATGGAGAAGATGGTAAAGAGTATTGAAGATAGTGCGGATGAGAGGATAGCTAAGGAAGAAGAATGGAGGAAGCAAGAGGCGGCCATGTATGAGCGAGAAGTGCATGAGTTTTGGGCTAAGGAGAGAGCATGGGTTGAAACTCGAGATGCGGCGATAATGGAGGCTCTAAGCAAATATACAGGCCAAGGAGCTTACAACAACAATGGCAAGGACGATATTGCAAAAGAAACTGGTAATGATAACAGAAAGAATTATCCTAGATGGACTGAACATGAAGTTGCAAGTTTAATACAGCTGAGGACTAGCTCGGAACTCACATCCCAAGAAAGTGAGTATCTGAAGGAGGAGGGAGTGTGGAAGGAGATAGCTGCAAAAATGGGTAGTTTGGGCTACACAAGGAGTGGAGGGGAGTGTAAAGAGAAATGGGAGAATATAAGTGTTTGTTTTAGAATGCCAACAGAATGGAACAAGATGCACAAACAAGAAACGAAGACTAATAACATGTACTTTAGTCAGATGTCTTGTTATGAAGAAGGCCAGGAAGTTTGGAATCAAAGACAGGATGGGATGGGAGTTCAACAAATGGATGAGGGACTTTCACCATCGTGTTCTAATATGGATGTGAACTCTAGCTCGTTGCACATTCCATTTAATGGAGGAGAAAACCTGTGGGATGAGAGATACTCTCATGCAACCAACTCACCACGTGACAACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

296

Amino Acids

34.3

Weight (kDa)

5.33

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 143 - 229 5.4e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 821
AciI CCGC 3 cut(s) 203, 248, 317
AcoI YGGCCR 1 cut(s) 249
AcuI CTGAAG 1 cut(s) 527
AcvI CACGTG 1 cut(s) 875
AdeI CACNNNGTG 1 cut(s) 875
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 1 cut(s) 821
AflII CTTAAG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 669
AgsI TTSAA 3 cut(s) 194, 305, 746
AjnI CCWGG 3 cut(s) 84, 156, 705
AleI CACNNNNGTG 1 cut(s) 772
AluBI AGCT 8 cut(s) 16, 129, 218, 359, 463, 474, 536, 801
AluI AGCT 8 cut(s) 16, 129, 218, 359, 463, 474, 536, 801
Alw21I GWGCWC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 3 cut(s) 249, 349, 703
ApeKI GCWGC 1 cut(s) 536
AsuHPI GGTGA 2 cut(s) 759, 861
AvaI CYCGRG 1 cut(s) 309
BanII GRGCYC 1 cut(s) 131
BbrPI CACGTG 1 cut(s) 875
BbsI GAAGAC 1 cut(s) 665
Bbv12I GWGCWC 1 cut(s) 131
BbvCI CCTCAGC 1 cut(s) 464
BbvI GCAGC 1 cut(s) 523
BccI CCATC 7 cut(s) 40, 163, 172, 423, 725, 730, 778
BciT130I CCWGG 3 cut(s) 86, 158, 707
BfaI CTAG 3 cut(s) 426, 471, 798
BfrI CTTAAG 1 cut(s) 56
BisI GCNGC 3 cut(s) 249, 318, 537
BlsI GCNGC 3 cut(s) 250, 319, 538
Bme1390I CCNGG 3 cut(s) 86, 158, 707
BmeT110I CYCGRG 1 cut(s) 309
BmrFI CCNGG 3 cut(s) 86, 158, 707
BmsI GCATC 2 cut(s) 304, 630
BpiI GAAGAC 1 cut(s) 665
BplI GAGNNNNNCTC 4 cut(s) 836, 868, 838, 870
Bpu10I CCTNAGC 3 cut(s) 219, 285, 464
Bsa29I ATCGAT 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 875
BsaJI CCNNGG 3 cut(s) 84, 156, 352
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 1 cut(s) 821
Bse1I ACTGG 1 cut(s) 403
BseBI CCWGG 3 cut(s) 86, 158, 707
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 3 cut(s) 84, 156, 352
BseGI GGATG 7 cut(s) 211, 485, 736, 741, 760, 793, 847
BseLI CCNNNNNNNGG 1 cut(s) 821
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 3 cut(s) 131, 527, 840
BseXI GCAGC 1 cut(s) 523
BshFI GGCC 3 cut(s) 251, 351, 705
BshVI ATCGAT 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 774
BslI CCNNNNNNNGG 1 cut(s) 821
BsmFI GGGAC 1 cut(s) 774
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 3 cut(s) 251, 351, 705
BsoBI CYCGRG 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 3 cut(s) 203, 248, 317
BspANI GGCC 3 cut(s) 251, 351, 705
BspCNI CTCAG 1 cut(s) 456
BspDI ATCGAT 1 cut(s) 32
BspTI CTTAAG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 3 cut(s) 84, 156, 352
BssMI GATC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 352
Bst2UI CCWGG 3 cut(s) 86, 158, 707
Bst4CI ACNGT 1 cut(s) 884
BstAFI CTTAAG 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 875
BstDEI CTNAG 4 cut(s) 219, 285, 335, 464
BstF5I GGATG 7 cut(s) 211, 485, 736, 741, 760, 793, 847
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 3 cut(s) 86, 158, 707
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 3 cut(s) 84, 156, 705
BstV1I GCAGC 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 665
BstXI CCANNNNNNTGG 1 cut(s) 630
Bsu15I ATCGAT 1 cut(s) 32
BsuRI GGCC 3 cut(s) 251, 351, 705
BsuTUI ATCGAT 1 cut(s) 32
BtsCI GGATG 7 cut(s) 211, 485, 736, 741, 760, 793, 847
ClaI ATCGAT 1 cut(s) 32
Csp6I GTAC 1 cut(s) 673
CviAII CATG 6 cut(s) 253, 272, 297, 440, 670, 857
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 4 cut(s) 219, 285, 335, 464
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
DraIII CACNNNGTG 1 cut(s) 875
EaeI YGGCCR 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 527
Eco72I CACGTG 1 cut(s) 875
Eco88I CYCGRG 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 129
EcoRII CCWGG 3 cut(s) 84, 156, 705
EcoT14I CCWWGG 1 cut(s) 352
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 6 cut(s) 256, 275, 300, 443, 673, 860
FaqI GGGAC 1 cut(s) 774
FatI CATG 6 cut(s) 252, 271, 296, 439, 669, 856
Fnu4HI GCNGC 3 cut(s) 249, 318, 537
FokI GGATG 7 cut(s) 218, 472, 743, 748, 767, 800, 854
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 249, 318, 537
FspBI CTAG 3 cut(s) 426, 471, 798
GluI GCNGC 3 cut(s) 249, 318, 537
HaeIII GGCC 3 cut(s) 251, 351, 705
Hin1II CATG 6 cut(s) 256, 275, 300, 443, 673, 860
HinfI GANTC 2 cut(s) 4, 718
HphI GGTGA 2 cut(s) 759, 861
Hpy166II GTNNAC 1 cut(s) 793
Hpy188I TCNGA 3 cut(s) 478, 507, 684
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 793
HpyAV CCTTC 4 cut(s) 136, 502, 520, 695
HpyCH4III ACNGT 1 cut(s) 884
HpyCH4IV ACGT 1 cut(s) 874
HpyCH4V TGCA 7 cut(s) 271, 389, 449, 539, 643, 808, 860
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 4 cut(s) 219, 285, 335, 464
HpySE526I ACGT 1 cut(s) 874
Hsp92II CATG 6 cut(s) 256, 275, 300, 443, 673, 860
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 356
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 2 cut(s) 304, 630
MaeI CTAG 3 cut(s) 426, 471, 798
MaeII ACGT 1 cut(s) 874
MaeIII GTNAC 2 cut(s) 5, 875
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 7 cut(s) 106, 187, 206, 236, 239, 670, 710
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 2 cut(s) 164, 418
MlyI GAGTC 1 cut(s) 13
MseI TTAA 4 cut(s) 57, 455, 819, 886
MslI CAYNNNNRTG 1 cut(s) 772
MspA1I CMGCKG 1 cut(s) 463
MspCI CTTAAG 1 cut(s) 56
MspR9I CCNGG 3 cut(s) 86, 158, 707
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 3 cut(s) 86, 158, 707
MwoI GCNNNNNNNGC 1 cut(s) 268
NdeII GATC 1 cut(s) 33
NlaIII CATG 6 cut(s) 256, 275, 300, 443, 673, 860
NmuCI GTSAC 2 cut(s) 5, 875
NspI RCATGY 1 cut(s) 673
OliI CACNNNNGTG 1 cut(s) 772
PaeR7I CTCGAG 1 cut(s) 309
PciI ACATGT 1 cut(s) 669
PcsI WCGNNNNNNNCGW 1 cut(s) 880
PctI GAATGC 1 cut(s) 624
PfeI GAWTC 1 cut(s) 718
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 3 cut(s) 250, 319, 538
PleI GAGTC 1 cut(s) 12
PmaCI CACGTG 1 cut(s) 875
PmlI CACGTG 1 cut(s) 875
PpsI GAGTC 1 cut(s) 12
Ppu21I YACGTR 1 cut(s) 875
PscI ACATGT 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 131
Psp6I CCWGG 3 cut(s) 84, 156, 705
PspCI CACGTG 1 cut(s) 875
PspGI CCWGG 3 cut(s) 84, 156, 705
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 1 cut(s) 772
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 4 cut(s) 57, 455, 819, 886
SatI GCNGC 3 cut(s) 249, 318, 537
Sau3AI GATC 1 cut(s) 33
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 86, 158, 707
SduI GDGCHC 1 cut(s) 131
SfaNI GCATC 2 cut(s) 304, 630
Sfr274I CTCGAG 1 cut(s) 309
SlaI CTCGAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 772
SmlI CTYRAG 2 cut(s) 56, 309
SmoI CTYRAG 2 cut(s) 56, 309
Sse9I AATT 2 cut(s) 164, 418
SsiI CCGC 3 cut(s) 203, 248, 317
SspMI CTAG 3 cut(s) 426, 471, 798
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 3 cut(s) 84, 156, 705
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 884
TaiI ACGT 1 cut(s) 877
TaqI TCGA 3 cut(s) 32, 44, 310
TasI AATT 2 cut(s) 164, 418
TatI WGTACW 1 cut(s) 672
TauI GCSGC 2 cut(s) 251, 320
TfiI GAWTC 1 cut(s) 718
Tru1I TTAA 4 cut(s) 57, 455, 819, 886
Tru9I TTAA 4 cut(s) 57, 455, 819, 886
TseFI GTSAC 2 cut(s) 5, 875
TseI GCWGC 1 cut(s) 536
Tsp45I GTSAC 2 cut(s) 5, 875
TspDTI ATGAA 3 cut(s) 18, 456, 711
Van91I CCANNNNNTGG 1 cut(s) 821
Vha464I CTTAAG 1 cut(s) 56
XceI RCATGY 1 cut(s) 673
XhoI CTCGAG 1 cut(s) 309
XspI CTAG 3 cut(s) 426, 471, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.