Rmu_sc0008192.1_g000003
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008192.1
Physical Location & Seq
Reverse (-)
16080 .. 18417
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008192.1_g000003.1.cds

Sequence Viewer

Length: 1755 bp
atggaaatggaagaccagtatggtttaggagatctcaggcagctcatgaacggaactggtaggtctcacttcccggccatccagactccgacggagctcttccccagtagccaccaccataggcctcagctcctcgctccggcccatcatcatcatcatcagcagcagcagcagcatccctacgaaatcatgatgatgggccggcttcagaccgcccacgacatcatgccacgtgggattcatgagtttcggtcttctgactcggccggtggttgtggtggtggtggtggtgcttgtactaataatactgttgcggctacttcttctctcagtggcggaggtggtctggaggctgagggcggaggctgtctcggcggggatgtcgggtccgggaggtggccgaggcaagagactctcacgcttctggagatccggtcacgactagattacaagttcaaagaggctaatcaaaaagggccgctctgggatgaagtctctaggatcatgtgtgaggaacatgggtatcaaagaagcggaaaaaaatgcagggaaaaattcgaaaacttatacaagtattacaagaagacaaaggaagggaaggccggaagacaagatggcaagcactatagattctttcggcagcttgaagctctctatggcgaaactagcaacaacattgccgtctcatcactcccaccagatcaatcccatttcctcggtaataataatatcaataacaataataatacttttcgttatcaagctcaaccgagtcatcaagatactactaccgctactacctatcagtccactcaaagcgtctcgaactcttccgatttcgaggactcgtcttcctcggaggataacgacggcagtgccattgctccgatggacgatgaagtgcttgagatgaagaggacgaggaagaggaggggatggaaggtaaagataaaggagtttatcgacgtgcaaatgaggaagatgatggagaagcaagaggagtggttggagaagctgatgggcacgcttgagcagaaagaaagggagagggtgttgagagaggaagagtggcgaaaacaagaggcgggccgggtggagcgagagcagcagttttgggctaaagagagagcttggattgaagcaagggataaagctctcatggatgcattgcagaaattaacaggaagtagtactagtcatgaagtaaagacttcttcttcaacccctgatcatgatcatgaggatattgtgagtgagcaagagacatggccggaatgcgagattaacaaattgattcagttgagaggaagcatggagtcgaggtttagtactaatcagagaggtgggtgtgtggaggaaagactttgggaggagatagcggcgaagatgagttgtttgggatatgaaaggagtggaatggtctgcaaggagaaatgggagagcataaactatgtgaggaagtgttccaaagagttgttcagtaagaagaggaaggagaacaattcaaggtcaagctcttgttactttgggaacaatgagtcaaattcctcattgtatagtagtcaaggaggagtctatgctacatgtgaaatgaataatcatgaacaaggtaatgatggttctccctctaataatccaaatgtaggcaatgctgcagtggtgaacgacacttgttttccatttttgatgggcgaaggagacaatttgtgggagaactacgggttgaagctcagcaagggtagccaaaaccagtga

Protein Analysis

584

Amino Acids

66.33

Weight (kDa)

6.17

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 481
AclWI GGATC 2 cut(s) 424, 509
AcoI YGGCCR 4 cut(s) 75, 264, 398, 1268
AcsI RAATTY 2 cut(s) 554, 1543
AcuI CTGAAG 1 cut(s) 191
AcvI CACGTG 1 cut(s) 233
AfaI GTAC 3 cut(s) 298, 1192, 1330
AfiI CCNNNNNNNGG 3 cut(s) 139, 396, 1643
AflIII ACRYGT 1 cut(s) 1583
AgsI TTSAA 6 cut(s) 457, 647, 1139, 1221, 1506, 1726
AhlI ACTAGT 1 cut(s) 1193
AjiI CACGTC 1 cut(s) 967
AjuI GAANNNNNNNTTGG 2 cut(s) 1460, 1492
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 8 cut(s) 69, 374, 404, 499, 688, 826, 1256, 1692
AlwI GGATC 2 cut(s) 424, 509
ApeKI GCWGC 8 cut(s) 40, 163, 166, 169, 172, 640, 1105, 1652
ApoI RAATTY 2 cut(s) 554, 1543
AspS9I GGNCC 5 cut(s) 142, 199, 387, 476, 1087
AsuC2I CCSGG 3 cut(s) 74, 391, 1091
AsuHPI GGTGA 1 cut(s) 1672
AsuII TTCGAA 1 cut(s) 558
AvaII GGWCC 1 cut(s) 387
BaeGI GKGCMC 1 cut(s) 1025
BaeI ACNNNNGTAYC 2 cut(s) 506, 539
BanII GRGCYC 1 cut(s) 99
BbrPI CACGTG 1 cut(s) 233
BbsI GAAGAC 5 cut(s) 18, 246, 590, 613, 843
Bbv12I GWGCWC 1 cut(s) 99
BbvCI CCTCAGC 2 cut(s) 126, 354
BbvI GCAGC 8 cut(s) 52, 175, 178, 181, 184, 652, 1117, 1639
BceAI ACGGC 2 cut(s) 665, 886
BcgI CGANNNNNNTGC 2 cut(s) 857, 891
BclI TGATCA 2 cut(s) 1228, 1234
BcnI CCSGG 3 cut(s) 74, 391, 1091
BcoDI GTCTC 8 cut(s) 69, 374, 404, 499, 688, 826, 1256, 1692
BcuI ACTAGT 1 cut(s) 1193
BfaI CTAG 4 cut(s) 443, 498, 666, 1194
BfmI CTRYAG 2 cut(s) 625, 1653
BglII AGATCT 1 cut(s) 31
BlpI GCTNAGC 1 cut(s) 1730
BmcAI AGTACT 2 cut(s) 1192, 1330
Bme1390I CCNGG 3 cut(s) 74, 391, 1091
Bme18I GGWCC 1 cut(s) 387
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 5 cut(s) 142, 199, 387, 476, 1087
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 3 cut(s) 74, 391, 1091
BmrI ACTGGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 184, 1153
BmuI ACTGGG 1 cut(s) 99
BpiI GAAGAC 5 cut(s) 18, 246, 590, 613, 843
BplI GAGNNNNNCTC 2 cut(s) 354, 386
BpmI CTGGAG 2 cut(s) 368, 446
Bpu10I CCTNAGC 2 cut(s) 126, 354
Bpu1102I GCTNAGC 1 cut(s) 1730
Bpu14I TTCGAA 1 cut(s) 558
BpuEI CTTGAG 2 cut(s) 926, 1049
BpuMI CCSGG 3 cut(s) 74, 391, 1091
BsaAI YACGTR 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 1233
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 3 cut(s) 401, 715, 855
BsaWI WCCGGW 1 cut(s) 432
BsaXI ACNNNNNCTCC 6 cut(s) 419, 449, 1037, 1067, 1307, 1337
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 396, 1643
Bse118I RCCGGY 2 cut(s) 201, 266
Bse1I ACTGG 4 cut(s) 16, 61, 105, 1750
Bse3DI GCAATG 4 cut(s) 675, 879, 1166, 1654
Bse8I GATNNNNATC 1 cut(s) 1233
BseDI CCNNGG 3 cut(s) 401, 715, 855
BseGI GGATG 6 cut(s) 78, 175, 385, 493, 941, 1168
BseJI GATNNNNATC 1 cut(s) 1233
BseLI CCNNNNNNNGG 3 cut(s) 139, 396, 1643
BseMI GCAATG 4 cut(s) 675, 879, 1166, 1654
BseMII CTCAG 5 cut(s) 49, 140, 343, 345, 1744
BseNI ACTGG 4 cut(s) 16, 61, 105, 1750
BseRI GAGGAG 5 cut(s) 122, 943, 1013, 1385, 1584
BseSI GKGCMC 1 cut(s) 1025
BseX3I CGGCCG 1 cut(s) 264
BseXI GCAGC 8 cut(s) 52, 175, 178, 181, 184, 652, 1117, 1639
Bsh1285I CGRYCG 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 9 cut(s) 74, 140, 202, 267, 390, 433, 603, 1090, 1271
BslI CCNNNNNNNGG 3 cut(s) 139, 396, 1643
BsmAI GTCTC 8 cut(s) 69, 374, 404, 499, 688, 826, 1256, 1692
BsmBI CGTCTC 2 cut(s) 688, 826
BsmI GAATGC 1 cut(s) 1280
Bso31I GGTCTC 1 cut(s) 69
Bsp119I TTCGAA 1 cut(s) 558
Bsp1286I GDGCHC 2 cut(s) 99, 1025
Bsp143I GATC 6 cut(s) 31, 429, 501, 700, 1228, 1234
Bsp1720I GCTNAGC 1 cut(s) 1730
BspCNI CTCAG 5 cut(s) 48, 139, 342, 346, 1743
BspHI TCATGA 7 cut(s) 45, 189, 241, 1198, 1231, 1237, 1600
BspLI GGNNCC 1 cut(s) 388
BspMAI CTGCAG 1 cut(s) 1657
BspPI GGATC 2 cut(s) 424, 509
BspQI GCTCTTC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 558
BspTNI GGTCTC 1 cut(s) 69
BsrBI CCGCTC 1 cut(s) 481
BsrDI GCAATG 4 cut(s) 675, 879, 1166, 1654
BsrFI RCCGGY 2 cut(s) 201, 266
BsrI ACTGG 4 cut(s) 16, 61, 105, 1750
BssAI RCCGGY 2 cut(s) 201, 266
BssECI CCNNGG 3 cut(s) 401, 715, 855
BssMI GATC 6 cut(s) 31, 429, 501, 700, 1228, 1234
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 6 cut(s) 104, 835, 908, 920, 1059, 1481
BstBAI YACGTR 1 cut(s) 233
BstBI TTCGAA 1 cut(s) 558
BstC8I GCNNGC 4 cut(s) 203, 620, 1025, 1087
BstDEI CTNAG 5 cut(s) 35, 126, 329, 354, 1730
BstF5I GGATG 6 cut(s) 78, 175, 385, 493, 941, 1168
BstKTI GATC 6 cut(s) 34, 432, 504, 703, 1231, 1237
BstMAI GTCTC 8 cut(s) 69, 374, 404, 499, 688, 826, 1256, 1692
BstMBI GATC 6 cut(s) 31, 429, 501, 700, 1228, 1234
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 6 cut(s) 169, 172, 372, 666, 1105, 1740
BstNSI RCATGY 1 cut(s) 1587
BstSCI CCNGG 3 cut(s) 72, 389, 1089
BstSFI CTRYAG 2 cut(s) 625, 1653
BstSLI GKGCMC 1 cut(s) 1025
BstV1I GCAGC 8 cut(s) 52, 175, 178, 181, 184, 652, 1117, 1639
BstV2I GAAGAC 5 cut(s) 18, 246, 590, 613, 843
BstX2I RGATCY 2 cut(s) 31, 429
BstYI RGATCY 2 cut(s) 31, 429
BstZI CGGCCG 1 cut(s) 264
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 6 cut(s) 78, 175, 385, 493, 941, 1168
BtsI GCAGTG 2 cut(s) 880, 1662
BtsIMutI CAGTG 3 cut(s) 337, 880, 1662
Cac8I GCNNGC 4 cut(s) 203, 620, 1025, 1087
CciI TCATGA 7 cut(s) 45, 189, 241, 1198, 1231, 1237, 1600
Cfr10I RCCGGY 2 cut(s) 201, 266
Cfr13I GGNCC 5 cut(s) 142, 199, 387, 476, 1087
CseI GACGC 1 cut(s) 808
Csp6I GTAC 3 cut(s) 297, 1191, 1329
CspCI CAANNNNNGTGG 2 cut(s) 983, 1018
CviQI GTAC 3 cut(s) 297, 1191, 1329
DdeI CTNAG 5 cut(s) 35, 126, 329, 354, 1730
DpnI GATC 6 cut(s) 33, 431, 503, 702, 1230, 1236
DpnII GATC 6 cut(s) 31, 429, 501, 700, 1228, 1234
EaeI YGGCCR 4 cut(s) 75, 264, 398, 1268
EagI CGGCCG 1 cut(s) 264
Eam1104I CTCTTC 6 cut(s) 104, 835, 908, 920, 1059, 1481
EarI CTCTTC 6 cut(s) 104, 835, 908, 920, 1059, 1481
EciI GGCGGA 2 cut(s) 351, 375
Ecl136II GAGCTC 1 cut(s) 97
EclXI CGGCCG 1 cut(s) 264
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 387
Eco52I CGGCCG 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 191
Eco72I CACGTG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 1168
EcoT38I GRGCYC 1 cut(s) 99
Esp3I CGTCTC 2 cut(s) 688, 826
FauI CCCGC 2 cut(s) 368, 1078
FbaI TGATCA 2 cut(s) 1228, 1234
FokI GGATG 6 cut(s) 65, 162, 392, 500, 948, 1175
FriOI GRGCYC 1 cut(s) 99
FspBI CTAG 4 cut(s) 443, 498, 666, 1194
GsuI CTGGAG 2 cut(s) 368, 446
HapII CCGG 9 cut(s) 74, 140, 202, 267, 390, 433, 603, 1090, 1271
HgaI GACGC 1 cut(s) 808
HpaII CCGG 9 cut(s) 74, 140, 202, 267, 390, 433, 603, 1090, 1271
HphI GGTGA 1 cut(s) 1672
Hpy166II GTNNAC 2 cut(s) 810, 1663
Hpy188I TCNGA 7 cut(s) 90, 210, 259, 835, 859, 888, 1338
Hpy8I GTNNAC 2 cut(s) 810, 1663
Hpy99I CGWCG 3 cut(s) 94, 872, 968
HpyAV CCTTC 5 cut(s) 587, 592, 934, 1486, 1688
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 2 cut(s) 232, 966
HpyCH4V TGCA 6 cut(s) 546, 970, 1166, 1171, 1425, 1655
HpyF10VI GCNNNNNNNGC 6 cut(s) 169, 172, 372, 666, 1105, 1740
HpyF3I CTNAG 5 cut(s) 35, 126, 329, 354, 1730
HpySE526I ACGT 2 cut(s) 232, 966
KroI GCCGGC 1 cut(s) 201
KroNI GCCGGC 1 cut(s) 203
Ksp22I TGATCA 2 cut(s) 1228, 1234
Kzo9I GATC 6 cut(s) 31, 429, 501, 700, 1228, 1234
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 5 cut(s) 94, 135, 142, 889, 1096
Lsp1109I GCAGC 8 cut(s) 52, 175, 178, 181, 184, 652, 1117, 1639
LweI GCATC 2 cut(s) 184, 1153
MaeI CTAG 4 cut(s) 443, 498, 666, 1194
MaeII ACGT 2 cut(s) 232, 966
MaeIII GTNAC 2 cut(s) 435, 1520
MalI GATC 6 cut(s) 33, 431, 503, 702, 1230, 1236
MbiI CCGCTC 1 cut(s) 481
MboI GATC 6 cut(s) 31, 429, 501, 700, 1228, 1234
MflI RGATCY 2 cut(s) 31, 429
MhlI GDGCHC 2 cut(s) 99, 1025
MluCI AATT 6 cut(s) 554, 1175, 1289, 1501, 1543, 1702
MlyI GAGTC 8 cut(s) 79, 254, 406, 781, 839, 1325, 1547, 1581
MmeI TCCRAC 2 cut(s) 113, 987
Mph1103I ATGCAT 1 cut(s) 1168
MroNI GCCGGC 1 cut(s) 201
MseI TTAA 2 cut(s) 1178, 1284
MslI CAYNNNNRTG 2 cut(s) 194, 1236
MspI CCGG 9 cut(s) 74, 140, 202, 267, 390, 433, 603, 1090, 1271
MspR9I CCNGG 3 cut(s) 74, 391, 1091
Mva1269I GAATGC 1 cut(s) 1280
MwoI GCNNNNNNNGC 6 cut(s) 169, 172, 372, 666, 1105, 1740
NaeI GCCGGC 1 cut(s) 203
NciI CCSGG 3 cut(s) 74, 391, 1091
NdeII GATC 6 cut(s) 31, 429, 501, 700, 1228, 1234
NgoMIV GCCGGC 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 388
NmeAIII GCCGAG 3 cut(s) 242, 351, 426
NmuCI GTSAC 1 cut(s) 435
NsiI ATGCAT 1 cut(s) 1168
NspI RCATGY 1 cut(s) 1587
NspV TTCGAA 1 cut(s) 558
PagI TCATGA 7 cut(s) 45, 189, 241, 1198, 1231, 1237, 1600
PceI AGGCCT 1 cut(s) 124
PciI ACATGT 1 cut(s) 1583
PciSI GCTCTTC 1 cut(s) 104
PctI GAATGC 1 cut(s) 1280
PdiI GCCGGC 1 cut(s) 203
PfeI GAWTC 3 cut(s) 238, 630, 1294
PfoI TCCNGGA 1 cut(s) 389
PleI GAGTC 8 cut(s) 79, 254, 406, 780, 839, 1324, 1546, 1580
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
PpsI GAGTC 8 cut(s) 79, 254, 406, 780, 839, 1324, 1546, 1580
Ppu21I YACGTR 1 cut(s) 233
PscI ACATGT 1 cut(s) 1583
Psp124BI GAGCTC 1 cut(s) 99
PspCI CACGTG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 5 cut(s) 142, 199, 387, 476, 1087
PsrI GAACNNNNNNTAC 2 cut(s) 1603, 1635
PstI CTGCAG 1 cut(s) 1657
PsuI RGATCY 2 cut(s) 31, 429
RsaI GTAC 3 cut(s) 298, 1192, 1330
RsaNI GTAC 3 cut(s) 297, 1191, 1329
RseI CAYNNNNRTG 2 cut(s) 194, 1236
SacI GAGCTC 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 1178, 1284
Sau3AI GATC 6 cut(s) 31, 429, 501, 700, 1228, 1234
Sau96I GGNCC 5 cut(s) 142, 199, 387, 476, 1087
ScaI AGTACT 2 cut(s) 1192, 1330
SchI GAGTC 8 cut(s) 79, 254, 406, 781, 839, 1325, 1547, 1581
ScrFI CCNGG 3 cut(s) 74, 391, 1091
SduI GDGCHC 2 cut(s) 99, 1025
SfaNI GCATC 2 cut(s) 184, 1153
SfcI CTRYAG 2 cut(s) 625, 1653
SfuI TTCGAA 1 cut(s) 558
SinI GGWCC 1 cut(s) 387
SmiMI CAYNNNNRTG 2 cut(s) 194, 1236
SmlI CTYRAG 2 cut(s) 905, 1028
SmoI CTYRAG 2 cut(s) 905, 1028
SpeI ACTAGT 1 cut(s) 1193
Sse9I AATT 6 cut(s) 554, 1175, 1289, 1501, 1543, 1702
SseBI AGGCCT 1 cut(s) 124
SspMI CTAG 4 cut(s) 443, 498, 666, 1194
SstI GAGCTC 1 cut(s) 99
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 72, 389, 1089
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 2 cut(s) 235, 969
TaqI TCGA 5 cut(s) 558, 824, 840, 963, 1319
TaqII GACCGA 1 cut(s) 240
TasI AATT 6 cut(s) 554, 1175, 1289, 1501, 1543, 1702
TatI WGTACW 3 cut(s) 296, 1190, 1328
TauI GCSGC 3 cut(s) 317, 481, 1382
TfiI GAWTC 3 cut(s) 238, 630, 1294
Tru1I TTAA 2 cut(s) 1178, 1284
Tru9I TTAA 2 cut(s) 1178, 1284
TscAI CASTG 3 cut(s) 337, 880, 1662
TseFI GTSAC 1 cut(s) 435
TseI GCWGC 8 cut(s) 40, 163, 166, 169, 172, 640, 1105, 1652
Tsp45I GTSAC 1 cut(s) 435
TspDTI ATGAA 9 cut(s) 62, 230, 504, 912, 926, 1215, 1419, 1607, 1617
TspGWI ACGGA 2 cut(s) 66, 107
TspRI CASTG 3 cut(s) 337, 880, 1662
VpaK11BI GGWCC 1 cut(s) 387
XapI RAATTY 2 cut(s) 554, 1543
XceI RCATGY 1 cut(s) 1587
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XspI CTAG 4 cut(s) 443, 498, 666, 1194
ZrmI AGTACT 2 cut(s) 1192, 1330
Zsp2I ATGCAT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.