pycom12g01570
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
1290300 .. 1292347
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g01570.1

Sequence Viewer

Length: 1170 bp
ATGAACGGAGGTCGGACCCACTTCCCCTCCATCCCACTACAACCCACTACCGAGCTCTTCCCGAACCACCACCGAGGACCTCCTCCTCCTCCTCCTTCTCTTCACCACCAACACCATCCGTACGAGCAGCTCATGATGATAGACCGTCCTCAAACCCACGAGATGATCCCTCGTGGGCTTCACCATCATCATGAGTTTCGCTCTCCGGACTCTACTAGTGCTGCAGGTGTAACTACTCCTACTACAGTTACGGCAGCTCCTTCTCTTAGTGGCGGTGGCTTGGAAGCTGAAGCTGGCGGGTGTCTTGGCGGTGAAGGGTCCGGAAGGTGGCCGAGGCAAGAGACTCTCACTCTTCTGGAGATCCGATCCGGGCTTGATTTTAAGTTCAAAGAGGCTAATCAAAAAGGTCCTCTCTGGGATGAAGTCTCTAGGATCATGTGTGAGGAACATGGGTATCAAAGAAGTGGGAAAAAATGTAGAGAGAAGTTTGAAAATTTGTACAAGTACTACAAGAAAACAAAGGAAGGAAAGGCTGGAAGACAAGATGGAAAGCATTATCGGTTCTTTCGACAGCTCGAAGCTCTCTATGGAGAAACTACCAATACCGTAGTCTCACCATCTTTGCCTGCAGAAACCCATTTCGTTGGTAATAATAGTAACAATTATCGTTACCAAGCAGCCGGCAATGCTCAAGCAAATCAAGAGATCACTACTCCCTATCATCATCAGTCATCTGATCAAAAGCACTGTGACAGCCTCAGCCTCTCGAATTCATCCGAGTTCGAAACCTCCTCCTCAGAAGATCAAGACATTAATAATGATGTCAGTGCAGCCGCAATGGACAATGATTCGCAGGAGGTGAAGACAACGAGGAAAAGAAGAGGAGGAATTGGACGGAGGGGTTGGAAAACGAAGATAAAAGAGTTTATCGATGCACAAATGAGGAAGCTGATTGAGAAGCAAGAGGAGTGGTTGGAGAGGCTAATGAGGACCCTTGAGCAAAAGGAGAGGGAGAGGGTGGTGAGAGAGGAGGAGTGGAGGAAACAAGAAGTTGATAGGGTTGAGAGAGAGCAAAATTTCTGGGCCAAAGAGAGGGCATGGATTGAAGCTAGGGATAAGGCTTTGATGGATGCACTGCACAAGATATCGGGAGGATCGATCATCAACTGA

Protein Analysis

390

Amino Acids

44.57

Weight (kDa)

7.34

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 109 - 195 5e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 215
AccIII TCCGGA 2 cut(s) 205, 320
AciI CCGC 4 cut(s) 273, 297, 309, 834
AclWI GGATC 5 cut(s) 160, 355, 360, 440, 1162
AcoI YGGCCR 1 cut(s) 329
AcsI RAATTY 3 cut(s) 493, 769, 1075
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 3 cut(s) 122, 500, 506
AfiI CCNNNNNNNGG 2 cut(s) 327, 1092
AgsI TTSAA 3 cut(s) 388, 491, 1106
AhlI ACTAGT 1 cut(s) 215
AluBI AGCT 9 cut(s) 55, 130, 257, 287, 293, 574, 581, 949, 1109
AluI AGCT 9 cut(s) 55, 130, 257, 287, 293, 574, 581, 949, 1109
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 3 cut(s) 335, 430, 616
AlwI GGATC 5 cut(s) 160, 355, 360, 440, 1162
Aor13HI TCCGGA 2 cut(s) 205, 320
AoxI GGCC 2 cut(s) 329, 1083
ApeKI GCWGC 5 cut(s) 127, 221, 254, 677, 830
ApoI RAATTY 3 cut(s) 493, 769, 1075
AseI ATTAAT 1 cut(s) 813
AspS9I GGNCC 6 cut(s) 15, 77, 318, 407, 990, 1083
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 6 cut(s) 95, 173, 323, 606, 871, 1033
AsuII TTCGAA 1 cut(s) 783
AvaII GGWCC 5 cut(s) 15, 77, 318, 407, 990
BaeI ACNNNNGTAYC 2 cut(s) 437, 470
BanII GRGCYC 1 cut(s) 57
BauI CACGAG 2 cut(s) 158, 171
BbsI GAAGAC 2 cut(s) 544, 869
Bbv12I GWGCWC 1 cut(s) 57
BbvCI CCTCAGC 1 cut(s) 758
BbvI GCAGC 5 cut(s) 139, 208, 266, 689, 842
BccI CCATC 6 cut(s) 38, 123, 192, 539, 625, 1120
BceAI ACGGC 1 cut(s) 267
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 3 cut(s) 335, 430, 616
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 3 cut(s) 216, 429, 1110
BfmI CTRYAG 3 cut(s) 222, 243, 627
BfuAI ACCTGC 1 cut(s) 215
BisI GCNGC 6 cut(s) 128, 222, 255, 678, 831, 834
BlsI GCNGC 6 cut(s) 129, 223, 256, 679, 832, 835
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 1 cut(s) 370
Bme18I GGWCC 5 cut(s) 15, 77, 318, 407, 990
BmgT120I GGNCC 6 cut(s) 15, 77, 318, 407, 990, 1083
BmiI GGNNCC 3 cut(s) 17, 319, 992
BmrFI CCNGG 1 cut(s) 370
BmsI GCATC 2 cut(s) 922, 1120
BpiI GAAGAC 2 cut(s) 544, 869
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 1 cut(s) 377
Bpu10I CCTNAGC 1 cut(s) 758
Bpu14I TTCGAA 1 cut(s) 783
BpuEI CTTGAG 2 cut(s) 675, 1016
BpuMI CCSGG 1 cut(s) 370
Bsa29I ATCGAT 2 cut(s) 930, 1157
BsaJI CCNNGG 2 cut(s) 73, 332
BsaWI WCCGGW 2 cut(s) 205, 320
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 241, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 327, 1092
Bse118I RCCGGY 1 cut(s) 680
Bse3DI GCAATG 2 cut(s) 691, 843
BseAI TCCGGA 2 cut(s) 205, 320
BseCI ATCGAT 2 cut(s) 930, 1157
BseDI CCNNGG 2 cut(s) 73, 332
BseGI GGATG 5 cut(s) 30, 115, 424, 773, 1135
BseLI CCNNNNNNNGG 2 cut(s) 327, 1092
BseMI GCAATG 2 cut(s) 691, 843
BseMII CTCAG 2 cut(s) 772, 810
BseXI GCAGC 5 cut(s) 139, 208, 266, 689, 842
BsgI GTGCAG 2 cut(s) 849, 1121
BshFI GGCC 2 cut(s) 331, 1085
BshVI ATCGAT 2 cut(s) 930, 1157
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 4 cut(s) 206, 321, 369, 681
BsiWI CGTACG 1 cut(s) 120
BslI CCNNNNNNNGG 2 cut(s) 327, 1092
BsmAI GTCTC 3 cut(s) 335, 430, 616
BsnI GGCC 2 cut(s) 331, 1085
Bsp119I TTCGAA 1 cut(s) 783
Bsp1286I GDGCHC 1 cut(s) 57
Bsp13I TCCGGA 2 cut(s) 205, 320
Bsp1407I TGTACA 1 cut(s) 498
Bsp143I GATC 9 cut(s) 165, 360, 365, 432, 705, 736, 802, 1154, 1158
BspACI CCGC 4 cut(s) 273, 297, 309, 834
BspANI GGCC 2 cut(s) 331, 1085
BspCNI CTCAG 2 cut(s) 771, 809
BspDI ATCGAT 2 cut(s) 930, 1157
BspEI TCCGGA 2 cut(s) 205, 320
BspHI TCATGA 2 cut(s) 132, 190
BspLI GGNNCC 3 cut(s) 17, 319, 992
BspMAI CTGCAG 2 cut(s) 226, 631
BspMI ACCTGC 1 cut(s) 215
BspPI GGATC 5 cut(s) 160, 355, 360, 440, 1162
BspQI GCTCTTC 1 cut(s) 62
BspT104I TTCGAA 1 cut(s) 783
BsrDI GCAATG 2 cut(s) 691, 843
BsrFI RCCGGY 1 cut(s) 680
BsrGI TGTACA 1 cut(s) 498
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 2 cut(s) 73, 332
BssMI GATC 9 cut(s) 165, 360, 365, 432, 705, 736, 802, 1154, 1158
BssSI CACGAG 2 cut(s) 158, 171
Bst2BI CACGAG 2 cut(s) 158, 171
Bst4CI ACNGT 4 cut(s) 146, 247, 607, 749
Bst6I CTCTTC 4 cut(s) 62, 105, 357, 874
BstAUI TGTACA 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 783
BstC8I GCNNGC 3 cut(s) 295, 627, 682
BstDEI CTNAG 3 cut(s) 266, 758, 796
BstF5I GGATG 5 cut(s) 30, 115, 424, 773, 1135
BstKTI GATC 9 cut(s) 168, 363, 368, 435, 708, 739, 805, 1157, 1161
BstMAI GTCTC 3 cut(s) 335, 430, 616
BstMBI GATC 9 cut(s) 165, 360, 365, 432, 705, 736, 802, 1154, 1158
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 368
BstSFI CTRYAG 3 cut(s) 222, 243, 627
BstV1I GCAGC 5 cut(s) 139, 208, 266, 689, 842
BstV2I GAAGAC 2 cut(s) 544, 869
BstX2I RGATCY 1 cut(s) 360
BstXI CCANNNNNNTGG 1 cut(s) 644
BstYI RGATCY 1 cut(s) 360
Bsu15I ATCGAT 2 cut(s) 930, 1157
BsuRI GGCC 2 cut(s) 331, 1085
BsuTUI ATCGAT 2 cut(s) 930, 1157
BtsCI GGATG 5 cut(s) 30, 115, 424, 773, 1135
BtsI GCAGTG 1 cut(s) 1133
BtsIMutI CAGTG 3 cut(s) 745, 832, 1133
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 3 cut(s) 295, 627, 682
CciI TCATGA 2 cut(s) 132, 190
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 6 cut(s) 15, 77, 318, 407, 990, 1083
ClaI ATCGAT 2 cut(s) 930, 1157
Csp6I GTAC 3 cut(s) 121, 499, 505
CspCI CAANNNNNGTGG 2 cut(s) 950, 985
CviAII CATG 5 cut(s) 133, 191, 436, 449, 1098
CviQI GTAC 3 cut(s) 121, 499, 505
DdeI CTNAG 3 cut(s) 266, 758, 796
DpnI GATC 9 cut(s) 167, 362, 367, 434, 707, 738, 804, 1156, 1160
DpnII GATC 9 cut(s) 165, 360, 365, 432, 705, 736, 802, 1154, 1158
EaeI YGGCCR 1 cut(s) 329
Eam1104I CTCTTC 4 cut(s) 62, 105, 357, 874
EarI CTCTTC 4 cut(s) 62, 105, 357, 874
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco32I GATATC 1 cut(s) 1146
Eco47I GGWCC 5 cut(s) 15, 77, 318, 407, 990
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 55
EcoO109I RGGNCCY 3 cut(s) 77, 407, 990
EcoRI GAATTC 1 cut(s) 769
EcoRV GATATC 1 cut(s) 1146
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 5 cut(s) 136, 194, 439, 452, 1101
FaiI YATR 6 cut(s) 134, 192, 437, 450, 588, 1099
FatI CATG 5 cut(s) 132, 190, 435, 448, 1097
FauI CCCGC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 6 cut(s) 128, 222, 255, 678, 831, 834
FokI GGATG 5 cut(s) 17, 102, 431, 760, 1142
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 6 cut(s) 128, 222, 255, 678, 831, 834
FspBI CTAG 3 cut(s) 216, 429, 1110
GluI GCNGC 6 cut(s) 128, 222, 255, 678, 831, 834
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 2 cut(s) 331, 1085
HapII CCGG 4 cut(s) 206, 321, 369, 681
Hin1II CATG 5 cut(s) 136, 194, 439, 452, 1101
HinfI GANTC 3 cut(s) 209, 343, 848
HpaII CCGG 4 cut(s) 206, 321, 369, 681
HphI GGTGA 6 cut(s) 95, 173, 323, 606, 871, 1033
Hpy188I TCNGA 5 cut(s) 15, 365, 736, 778, 799
HpyAV CCTTC 5 cut(s) 105, 270, 308, 318, 518
HpyCH4III ACNGT 4 cut(s) 146, 247, 607, 749
HpyCH4V TGCA 6 cut(s) 224, 629, 830, 935, 1133, 1138
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 3 cut(s) 266, 758, 796
Hsp92II CATG 5 cut(s) 136, 194, 439, 452, 1101
Kpn2I TCCGGA 2 cut(s) 205, 320
KroI GCCGGC 1 cut(s) 680
KroNI GCCGGC 1 cut(s) 682
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 9 cut(s) 165, 360, 365, 432, 705, 736, 802, 1154, 1158
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 1 cut(s) 262
Lsp1109I GCAGC 5 cut(s) 139, 208, 266, 689, 842
LweI GCATC 2 cut(s) 922, 1120
MaeI CTAG 3 cut(s) 216, 429, 1110
MaeIII GTNAC 5 cut(s) 229, 247, 656, 668, 749
MalI GATC 9 cut(s) 167, 362, 367, 434, 707, 738, 804, 1156, 1160
MboI GATC 9 cut(s) 165, 360, 365, 432, 705, 736, 802, 1154, 1158
MboII GAAGA 8 cut(s) 49, 92, 344, 549, 812, 874, 891, 925
MflI RGATCY 1 cut(s) 360
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 5 cut(s) 493, 661, 769, 888, 1075
MlyI GAGTC 2 cut(s) 203, 337
MmeI TCCRAC 2 cut(s) 884, 954
MroI TCCGGA 2 cut(s) 205, 320
MroNI GCCGGC 1 cut(s) 680
MseI TTAA 2 cut(s) 381, 813
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 4 cut(s) 206, 321, 369, 681
MspR9I CCNGG 1 cut(s) 370
MwoI GCNNNNNNNGC 1 cut(s) 686
NaeI GCCGGC 1 cut(s) 682
NciI CCSGG 1 cut(s) 370
NdeII GATC 9 cut(s) 165, 360, 365, 432, 705, 736, 802, 1154, 1158
NgoMIV GCCGGC 1 cut(s) 680
NlaIII CATG 5 cut(s) 136, 194, 439, 452, 1101
NlaIV GGNNCC 3 cut(s) 17, 319, 992
NmeAIII GCCGAG 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 749
NspV TTCGAA 1 cut(s) 783
PagI TCATGA 2 cut(s) 132, 190
PaqCI CACCTGC 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 2 cut(s) 565, 1154
PdiI GCCGGC 1 cut(s) 682
PfeI GAWTC 1 cut(s) 848
Pfl23II CGTACG 1 cut(s) 120
PkrI GCNGC 6 cut(s) 129, 223, 256, 679, 832, 835
PleI GAGTC 2 cut(s) 203, 337
PpsI GAGTC 2 cut(s) 203, 337
PpuMI RGGWCCY 3 cut(s) 77, 407, 990
PshBI ATTAAT 1 cut(s) 813
Psp124BI GAGCTC 1 cut(s) 57
Psp5II RGGWCCY 3 cut(s) 77, 407, 990
PspLI CGTACG 1 cut(s) 120
PspN4I GGNNCC 3 cut(s) 17, 319, 992
PspPI GGNCC 6 cut(s) 15, 77, 318, 407, 990, 1083
PspPPI RGGWCCY 3 cut(s) 77, 407, 990
PstI CTGCAG 2 cut(s) 226, 631
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 3 cut(s) 122, 500, 506
RsaNI GTAC 3 cut(s) 121, 499, 505
RseI CAYNNNNRTG 1 cut(s) 189
SacI GAGCTC 1 cut(s) 57
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 381, 813
SatI GCNGC 6 cut(s) 128, 222, 255, 678, 831, 834
Sau3AI GATC 9 cut(s) 165, 360, 365, 432, 705, 736, 802, 1154, 1158
Sau96I GGNCC 6 cut(s) 15, 77, 318, 407, 990, 1083
ScaI AGTACT 1 cut(s) 506
SchI GAGTC 2 cut(s) 203, 337
ScrFI CCNGG 1 cut(s) 370
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 2 cut(s) 922, 1120
SfcI CTRYAG 3 cut(s) 222, 243, 627
SfuI TTCGAA 1 cut(s) 783
SinI GGWCC 5 cut(s) 15, 77, 318, 407, 990
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 690, 995
SmoI CTYRAG 2 cut(s) 690, 995
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 5 cut(s) 493, 661, 769, 888, 1075
SsiI CCGC 4 cut(s) 273, 297, 309, 834
SspMI CTAG 3 cut(s) 216, 429, 1110
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 368
TaaI ACNGT 4 cut(s) 146, 247, 607, 749
TaqI TCGA 6 cut(s) 568, 576, 767, 783, 930, 1157
TasI AATT 5 cut(s) 493, 661, 769, 888, 1075
TatI WGTACW 2 cut(s) 498, 504
TauI GCSGC 1 cut(s) 836
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 2 cut(s) 381, 813
Tru9I TTAA 2 cut(s) 381, 813
TscAI CASTG 3 cut(s) 752, 832, 1140
TseFI GTSAC 1 cut(s) 749
TseI GCWGC 5 cut(s) 127, 221, 254, 677, 830
Tsp45I GTSAC 1 cut(s) 749
TspDTI ATGAA 3 cut(s) 17, 435, 762
TspGWI ACGGA 3 cut(s) 21, 108, 910
TspRI CASTG 3 cut(s) 752, 832, 1140
VpaK11BI GGWCC 5 cut(s) 15, 77, 318, 407, 990
VspI ATTAAT 1 cut(s) 813
XapI RAATTY 3 cut(s) 493, 769, 1075
XspI CTAG 3 cut(s) 216, 429, 1110
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.