Prupe.7G116400_v2.0.a1
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
14152985 .. 14156061
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G116400.1

Sequence Viewer

Length: 1635 bp
ATGGAAATGGAGGACCAGTACAACATGTCAGACCTCCGGCAGCTCATGAACGGAGGAGGAAGTAGGGCCCACTTTCCCTCCATCCCCTTACAAGCCGCCACGGAGCTCTTCCCGAGCCACCGAGTTCCGCCTCTCACGGCTCCACCAGCCCATCATCATCAGCAGCACCATCACTATGAGCAGCTGATGATGATGGGCCGTCCTCAGCCGCATGATCATCATATCATCAACCCTCGTGGGCTCCACCATCACGAGTTCCGCTCTCCAGATTCTGCTGCTGGAGGCGGTGCTGCTGCTAATAGTGCCACTGTTACTGCTTCTCTCAGTGGTGGTGGTGGGTTAATGGAGGCCGAGGCTGGCGGCGATATTGGAGGGTCTGGAAGATGGCCGAGGCAGGAGACTCTCACACTTCTAGAGATCCGATCCCGGCTTGATTTTAAGTTCAAAGAGGCCAACCAAAAGGGTCCCCTCTGGGATGAGGTCTCTAGGATCATGTGTGAGGAACATGGGTATCAAAGAAGTGGGAAAAAATGTAGAGAGAAATTTGAAAATTTGTACAAGTATTACAAGAAGACAAAGGAAGGAAAGGCTGGAAGACAAGATGGTAAGAATTATCGCTTCTTTCGACAGCTTGAAGCTCTCTACGGAGAAACCACCAATTCCGTAGTATCAACTTCACTCCCAGAAGCCCATTTCATTGGTAATAACAGTAATAACAATAATCTTCGTTACCAAACAACGATCAACGCTCAAGCCAATCAAGAGATCACTACTCCCTATCATCACTCAACTGATCAAAAGCACTGTGACAGCCTAAGCCTCTCGAATTCCTCCGAGTTCGACACCTCCTCGTCGGAAGATCAGGACAACAATGATGTCAGCGCGGCCGCGATGGATGATGACTCTCCGGACATCAAGACGATGAGGAAGAGAAGAGGTGGGAGGGGTTGGAAGGTGAAGATAAAAGAGTTCATTGATGCACAAATGAGGAAGCTGATGGAGAAACAAGAGGAGTGGCTGGAGAGGTTAATGAGAACTCTTGAGCAAAAGGAGAGGGAGAGGATGGTGAGAGAGGAGGAGTGGAGAAAGCAAGAAGTGGAGAGGGTTGAAAAAGAGCACAAGTTTTGGGCCAAAGAGAGGGCTTGGATTGAAGCAAGGGACAAGGCTTTGATGGAGGCATTGCACAAGCTAACAGGAGGATCATCATCAACAGATCAAGCAAAGGCTAACTATAGTTCTCCATCACCTGATCATGATCATGATCAGCATCATCATCATCATCATCATCATCATCAGACTAGTTCTGATCATGATCAAATTGTTCATAACACTAGTAGTGCAAGGGAGTTGTTGAATAAGAAGCGCAAGGAGAATGTGAATTCAAAAAGCTCAGCTTGTTACTTTCAGAACAATGAGTCTTGTTCCTCATTGTATAGTAGTCAAGGAGGGTATTGTGCTGAAATGAATGACCATGAGCAAGGTGGTAATAATGATGGGTCTAATAATTCTCCTTGTGGCAATGCAAATGTGGGAAATGCAGTGCAGGATAATTGTTTTCCCTTCTTGATGAGTGAAGGAGAGAACTTGTGGGAAAACTATGGACTGAAGCTCAGCAAGGGAAGCCAAAACCAGTGA

Protein Analysis

545

Amino Acids

61.89

Weight (kDa)

6.4

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 261
AccII CGCG 2 cut(s) 884, 890
AccIII TCCGGA 1 cut(s) 907
AciI CCGC 8 cut(s) 96, 128, 209, 259, 285, 360, 884, 888
AclWI GGATC 4 cut(s) 412, 417, 497, 1207
AcoI YGGCCR 2 cut(s) 386, 885
AcsI RAATTY 4 cut(s) 542, 550, 826, 1378
AcuI CTGAAG 1 cut(s) 1625
AfaI GTAC 2 cut(s) 20, 557
AfiI CCNNNNNNNGG 1 cut(s) 1137
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 7 cut(s) 445, 548, 635, 1109, 1151, 1354, 1383
AhlI ACTAGT 2 cut(s) 1298, 1331
Alw21I GWGCWC 2 cut(s) 108, 1119
Alw26I GTCTC 2 cut(s) 392, 487
AlwI GGATC 4 cut(s) 412, 417, 497, 1207
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 112
Aor13HI TCCGGA 1 cut(s) 907
AoxI GGCC 7 cut(s) 66, 196, 348, 386, 450, 885, 1128
ApaI GGGCCC 1 cut(s) 70
ApeKI GCWGC 6 cut(s) 40, 163, 181, 275, 290, 293
ApoI RAATTY 4 cut(s) 542, 550, 826, 1378
AspLEI GCGC 2 cut(s) 884, 1365
AspS9I GGNCC 6 cut(s) 13, 66, 67, 196, 464, 1128
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 3 cut(s) 967, 1078, 1236
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 2 cut(s) 13, 464
BaeGI GKGCMC 1 cut(s) 70
BaeI ACNNNNGTAYC 2 cut(s) 494, 527
BanII GRGCYC 3 cut(s) 70, 108, 243
BauI CACGAG 2 cut(s) 234, 251
BbsI GAAGAC 2 cut(s) 578, 601
Bbv12I GWGCWC 2 cut(s) 108, 1119
BbvCI CCTCAGC 1 cut(s) 204
BbvI GCAGC 6 cut(s) 52, 175, 193, 262, 277, 280
BceAI ACGGC 2 cut(s) 153, 183
BclI TGATCA 7 cut(s) 214, 793, 1249, 1255, 1261, 1306, 1312
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 2 cut(s) 392, 487
BcuI ACTAGT 2 cut(s) 1298, 1331
BfaI CTAG 4 cut(s) 413, 486, 1299, 1332
BfmI CTRYAG 1 cut(s) 1231
BlpI GCTNAGC 2 cut(s) 1390, 1610
Bme1390I CCNGG 1 cut(s) 427
Bme18I GGWCC 2 cut(s) 13, 464
BmeT110I CYCGRG 1 cut(s) 112
BmgT120I GGNCC 6 cut(s) 13, 66, 67, 196, 464, 1128
BmiI GGNNCC 5 cut(s) 68, 141, 242, 465, 466
BmrFI CCNGG 1 cut(s) 427
BmsI GCATC 2 cut(s) 967, 1276
BpiI GAAGAC 2 cut(s) 578, 601
BplI GAGNNNNNCTC 2 cut(s) 245, 277
BpmI CTGGAG 3 cut(s) 249, 300, 1040
Bpu10I CCTNAGC 2 cut(s) 204, 815
Bpu1102I GCTNAGC 2 cut(s) 1390, 1610
BpuEI CTTGAG 2 cut(s) 735, 1061
BpuMI CCSGG 1 cut(s) 427
BsaBI GATNNNNATC 5 cut(s) 1204, 1254, 1260, 1266, 1311
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 3 cut(s) 99, 351, 389
BsaWI WCCGGW 1 cut(s) 907
BsaXI ACNNNNNCTCC 3 cut(s) 32, 62, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 1137
Bse1I ACTGG 2 cut(s) 16, 1630
Bse3DI GCAATG 2 cut(s) 1178, 1525
Bse8I GATNNNNATC 5 cut(s) 1204, 1254, 1260, 1266, 1311
BseAI TCCGGA 1 cut(s) 907
BseDI CCNNGG 3 cut(s) 99, 351, 389
BseGI GGATG 4 cut(s) 81, 481, 901, 1068
BseJI GATNNNNATC 5 cut(s) 1204, 1254, 1260, 1266, 1311
BseLI CCNNNNNNNGG 1 cut(s) 1137
BseMI GCAATG 2 cut(s) 1178, 1525
BseMII CTCAG 4 cut(s) 218, 337, 1404, 1624
BseNI ACTGG 2 cut(s) 16, 1630
BseRI GAGGAG 5 cut(s) 69, 838, 1025, 1088, 1091
BseSI GKGCMC 1 cut(s) 70
BseX3I CGGCCG 1 cut(s) 885
BseXI GCAGC 6 cut(s) 52, 175, 193, 262, 277, 280
BsgI GTGCAG 1 cut(s) 1562
Bsh1236I CGCG 2 cut(s) 884, 890
Bsh1285I CGRYCG 1 cut(s) 888
BshFI GGCC 7 cut(s) 68, 198, 350, 388, 452, 887, 1130
BsiEI CGRYCG 1 cut(s) 888
BsiHKAI GWGCWC 2 cut(s) 108, 1119
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 3 cut(s) 37, 427, 908
BslFI GGGAC 2 cut(s) 450, 1172
BslI CCNNNNNNNGG 1 cut(s) 1137
BsmAI GTCTC 2 cut(s) 392, 487
BsmFI GGGAC 2 cut(s) 450, 1172
BsnI GGCC 7 cut(s) 68, 198, 350, 388, 452, 887, 1130
Bso31I GGTCTC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 112
Bsp120I GGGCCC 1 cut(s) 66
Bsp1286I GDGCHC 4 cut(s) 70, 108, 243, 1119
Bsp13I TCCGGA 1 cut(s) 907
Bsp1407I TGTACA 1 cut(s) 555
Bsp1720I GCTNAGC 2 cut(s) 1390, 1610
BspACI CCGC 8 cut(s) 96, 128, 209, 259, 285, 360, 884, 888
BspANI GGCC 7 cut(s) 68, 198, 350, 388, 452, 887, 1130
BspCNI CTCAG 4 cut(s) 217, 336, 1403, 1623
BspEI TCCGGA 1 cut(s) 907
BspFNI CGCG 2 cut(s) 884, 890
BspHI TCATGA 4 cut(s) 45, 1252, 1258, 1309
BspLI GGNNCC 5 cut(s) 68, 141, 242, 465, 466
BspPI GGATC 4 cut(s) 412, 417, 497, 1207
BspQI GCTCTTC 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 487
BsrBI CCGCTC 1 cut(s) 261
BsrDI GCAATG 2 cut(s) 1178, 1525
BsrGI TGTACA 1 cut(s) 555
BsrI ACTGG 2 cut(s) 16, 1630
BssECI CCNNGG 3 cut(s) 99, 351, 389
BssSI CACGAG 2 cut(s) 234, 251
Bst2BI CACGAG 2 cut(s) 234, 251
Bst4CI ACNGT 3 cut(s) 310, 710, 806
Bst6I CTCTTC 3 cut(s) 113, 923, 928
BstAUI TGTACA 1 cut(s) 555
BstC8I GCNNGC 1 cut(s) 358
BstDEI CTNAG 5 cut(s) 204, 323, 815, 1390, 1610
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 4 cut(s) 81, 481, 901, 1068
BstFNI CGCG 2 cut(s) 884, 890
BstHHI GCGC 2 cut(s) 884, 1365
BstMAI GTCTC 2 cut(s) 392, 487
BstMCI CGRYCG 1 cut(s) 888
BstMWI GCNNNNNNNGC 3 cut(s) 146, 302, 1620
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 425
BstSFI CTRYAG 1 cut(s) 1231
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 2 cut(s) 884, 890
BstV1I GCAGC 6 cut(s) 52, 175, 193, 262, 277, 280
BstV2I GAAGAC 2 cut(s) 578, 601
BstX2I RGATCY 1 cut(s) 417
BstXI CCANNNNNNTGG 1 cut(s) 698
BstYI RGATCY 1 cut(s) 417
BstZI CGGCCG 1 cut(s) 885
BsuRI GGCC 7 cut(s) 68, 198, 350, 388, 452, 887, 1130
BtgI CCRYGG 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 905
BtsCI GGATG 4 cut(s) 81, 481, 901, 1068
BtsI GCAGTG 1 cut(s) 1545
BtsIMutI CAGTG 4 cut(s) 306, 331, 802, 1545
Cac8I GCNNGC 1 cut(s) 358
CaiI CAGNNNCTG 1 cut(s) 272
CciI TCATGA 4 cut(s) 45, 1252, 1258, 1309
CciNI GCGGCCGC 1 cut(s) 885
CfoI GCGC 2 cut(s) 884, 1365
Cfr13I GGNCC 6 cut(s) 13, 66, 67, 196, 464, 1128
Csp6I GTAC 2 cut(s) 19, 556
CspCI CAANNNNNGTGG 4 cut(s) 217, 252, 995, 1030
CviAII CATG 9 cut(s) 25, 46, 212, 493, 506, 1253, 1259, 1310, 1472
CviQI GTAC 2 cut(s) 19, 556
DdeI CTNAG 5 cut(s) 204, 323, 815, 1390, 1610
EaeI YGGCCR 2 cut(s) 386, 885
EagI CGGCCG 1 cut(s) 885
Eam1104I CTCTTC 3 cut(s) 113, 923, 928
EarI CTCTTC 3 cut(s) 113, 923, 928
EciI GGCGGA 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 106
EclXI CGGCCG 1 cut(s) 885
Eco24I GRGCYC 3 cut(s) 70, 108, 243
Eco31I GGTCTC 1 cut(s) 487
Eco47I GGWCC 2 cut(s) 13, 464
Eco52I CGGCCG 1 cut(s) 885
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 1625
Eco88I CYCGRG 1 cut(s) 112
EcoICRI GAGCTC 1 cut(s) 106
EcoO109I RGGNCCY 2 cut(s) 66, 464
EcoRI GAATTC 2 cut(s) 826, 1378
EcoT38I GRGCYC 3 cut(s) 70, 108, 243
FaeI CATG 9 cut(s) 28, 49, 215, 496, 509, 1256, 1262, 1313, 1475
FalI AAGNNNNNCTT 2 cut(s) 1378, 1410
FaqI GGGAC 2 cut(s) 450, 1172
FatI CATG 9 cut(s) 24, 45, 211, 492, 505, 1252, 1258, 1309, 1471
FbaI TGATCA 7 cut(s) 214, 793, 1249, 1255, 1261, 1306, 1312
FokI GGATG 4 cut(s) 68, 488, 908, 1075
FriOI GRGCYC 3 cut(s) 70, 108, 243
FspBI CTAG 4 cut(s) 413, 486, 1299, 1332
GlaI GCGC 2 cut(s) 883, 1364
GsuI CTGGAG 3 cut(s) 249, 300, 1040
HaeIII GGCC 7 cut(s) 68, 198, 350, 388, 452, 887, 1130
HapII CCGG 3 cut(s) 37, 427, 908
HhaI GCGC 2 cut(s) 884, 1365
Hin1II CATG 9 cut(s) 28, 49, 215, 496, 509, 1256, 1262, 1313, 1475
Hin6I GCGC 2 cut(s) 882, 1363
HinP1I GCGC 2 cut(s) 882, 1363
HinfI GANTC 4 cut(s) 269, 400, 902, 1415
HpaII CCGG 3 cut(s) 37, 427, 908
HphI GGTGA 3 cut(s) 967, 1078, 1236
Hpy188I TCNGA 7 cut(s) 31, 422, 835, 856, 1296, 1306, 1407
Hpy99I CGWCG 1 cut(s) 856
HpyAV CCTTC 4 cut(s) 575, 946, 1568, 1570
HpyCH4III ACNGT 3 cut(s) 310, 710, 806
HpyCH4V TGCA 6 cut(s) 980, 1183, 1340, 1523, 1538, 1543
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 302, 1620
HpyF3I CTNAG 5 cut(s) 204, 323, 815, 1390, 1610
Hsp92II CATG 9 cut(s) 28, 49, 215, 496, 509, 1256, 1262, 1313, 1475
HspAI GCGC 2 cut(s) 882, 1363
KflI GGGWCCC 1 cut(s) 464
Kpn2I TCCGGA 1 cut(s) 907
Ksp22I TGATCA 7 cut(s) 214, 793, 1249, 1255, 1261, 1306, 1312
LguI GCTCTTC 1 cut(s) 113
LmnI GCTCC 3 cut(s) 103, 145, 246
Lsp1109I GCAGC 6 cut(s) 52, 175, 193, 262, 277, 280
LweI GCATC 2 cut(s) 967, 1276
MaeI CTAG 4 cut(s) 413, 486, 1299, 1332
MaeIII GTNAC 4 cut(s) 310, 728, 806, 1397
MbiI CCGCTC 1 cut(s) 261
MboII GAAGA 9 cut(s) 100, 393, 583, 606, 716, 869, 940, 945, 970
MflI RGATCY 1 cut(s) 417
MhlI GDGCHC 4 cut(s) 70, 108, 243, 1119
MluCI AATT 9 cut(s) 542, 550, 610, 658, 826, 1317, 1378, 1504, 1549
MlyI GAGTC 3 cut(s) 394, 896, 1424
MmeI TCCRAC 2 cut(s) 834, 929
MroI TCCGGA 1 cut(s) 907
MseI TTAA 3 cut(s) 341, 438, 1028
MslI CAYNNNNRTG 2 cut(s) 174, 1257
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 3 cut(s) 37, 427, 908
MspR9I CCNGG 1 cut(s) 427
MvnI CGCG 2 cut(s) 884, 890
MwoI GCNNNNNNNGC 3 cut(s) 146, 302, 1620
NciI CCSGG 1 cut(s) 427
NlaIII CATG 9 cut(s) 28, 49, 215, 496, 509, 1256, 1262, 1313, 1475
NlaIV GGNNCC 5 cut(s) 68, 141, 242, 465, 466
NmeAIII GCCGAG 2 cut(s) 376, 414
NmuCI GTSAC 1 cut(s) 806
NotI GCGGCCGC 1 cut(s) 885
NspI RCATGY 1 cut(s) 28
PagI TCATGA 4 cut(s) 45, 1252, 1258, 1309
PciI ACATGT 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 622
PfeI GAWTC 1 cut(s) 269
PleI GAGTC 3 cut(s) 394, 896, 1423
PpsI GAGTC 3 cut(s) 394, 896, 1423
PpuMI RGGWCCY 1 cut(s) 464
PscI ACATGT 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 464
PspN4I GGNNCC 5 cut(s) 68, 141, 242, 465, 466
PspOMI GGGCCC 1 cut(s) 66
PspPI GGNCC 6 cut(s) 13, 66, 67, 196, 464, 1128
PspPPI RGGWCCY 1 cut(s) 464
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 417
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 2 cut(s) 20, 557
RsaNI GTAC 2 cut(s) 19, 556
RseI CAYNNNNRTG 2 cut(s) 174, 1257
SacI GAGCTC 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 341, 438, 1028
Sau96I GGNCC 6 cut(s) 13, 66, 67, 196, 464, 1128
SchI GAGTC 3 cut(s) 394, 896, 1424
ScrFI CCNGG 1 cut(s) 427
SduI GDGCHC 4 cut(s) 70, 108, 243, 1119
SfaNI GCATC 2 cut(s) 967, 1276
SfcI CTRYAG 1 cut(s) 1231
SinI GGWCC 2 cut(s) 13, 464
SmiMI CAYNNNNRTG 2 cut(s) 174, 1257
SmlI CTYRAG 2 cut(s) 750, 1040
SmoI CTYRAG 2 cut(s) 750, 1040
SpeI ACTAGT 2 cut(s) 1298, 1331
Sse9I AATT 9 cut(s) 542, 550, 610, 658, 826, 1317, 1378, 1504, 1549
SsiI CCGC 8 cut(s) 96, 128, 209, 259, 285, 360, 884, 888
SspMI CTAG 4 cut(s) 413, 486, 1299, 1332
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 425
TaaI ACNGT 3 cut(s) 310, 710, 806
TaqI TCGA 3 cut(s) 625, 824, 840
TasI AATT 9 cut(s) 542, 550, 610, 658, 826, 1317, 1378, 1504, 1549
TatI WGTACW 2 cut(s) 18, 555
TauI GCSGC 5 cut(s) 98, 211, 363, 887, 890
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 3 cut(s) 341, 438, 1028
Tru9I TTAA 3 cut(s) 341, 438, 1028
TscAI CASTG 4 cut(s) 313, 331, 809, 1545
TseFI GTSAC 1 cut(s) 806
TseI GCWGC 6 cut(s) 40, 163, 181, 275, 290, 293
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 5 cut(s) 62, 685, 961, 1313, 1478
TspGWI ACGGA 4 cut(s) 66, 116, 652, 660
TspRI CASTG 4 cut(s) 313, 331, 809, 1545
VpaK11BI GGWCC 2 cut(s) 13, 464
XapI RAATTY 4 cut(s) 542, 550, 826, 1378
XbaI TCTAGA 1 cut(s) 412
XceI RCATGY 1 cut(s) 28
XcmI CCANNNNNNNNNTGG 1 cut(s) 1478
XspI CTAG 4 cut(s) 413, 486, 1299, 1332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.