Prupe.2G086500_v2.0.a1
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
13708491 .. 13711214
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G086500.1

Sequence Viewer

Length: 1698 bp
ATGGATGAGTATGGAGTTCCAGATCTCCGGCAGCTGATGGCCTCAAGAACCCAGTTTTGCACGACCTCACAATTCCAAGAGCCATTTTCAGCACATGGAAATCTCACAGCTCAACCTAATTACCAGCCCATGCTTGTTCCAGCTGGTGGCTTGGTTGATCATCTTCATCCTCCTCATTATTCTACTATAATCAACGGCTGTGGTGCAGCTCATCCTCCTAATAACAATGCTGCCGCCACCACTTCATCAGCTGCTGCATTGTATGGGATAGATTTGGAGCATGGACATGGATGGAATAATAATATTAATGTTGGCATGAATGCTGCTGATGGAGGAAATAATATGAATTACAGATGGCCAAGACAAGAAACTCTTACCCTTCTTGAGATTAGATCTGGTCTTGATTCCAAGTTCAAGGAGACTAATCAGAAAGGACCCTTGTGGGATGAAGTCTCTAGGATAATGGGTGAGGAACATGGATACCAGAGGAGTGGGAAGAAATGCAAAGAGAAGTTTGAGAACTTGTACAAGTACTACAAGAAAACAAAGGAAGGCAAAGCTGGGAGACAAGATGGGAAGCACTACAGGTTCTTTCGTCAGCTCGAAGCAATTTATGGAGATCAAACCAGCAATCAATCGTCAACTTATGGTAGATTGAACCCTCTTCTTTATCATCACACTACTCCAAATGACACTGTTAACCCTAAAAATCAAGAAGTGGTGCAAGACCAAAAGCACATCAGTTGTGAGAGCCTTAGTTTCTCCAATAACTCAACTGAATTTGATCAGACCTCATCCTCGGAGAACAATGATGATGATCTTTCAATTTCAGCCATTGATTATTTTATGATGAATCAATCAATGGGGAGCCTTAAGAATGAGAAACAAACTTGTGCAAGGCCGGTTAATAAGAAGAGCTGGAAAGCAAAGGTGGAGGATTTTGTGAATTCACAGATTGGGAAAGTAATAAACACCCAGGAGGCTTGGATGGAGAAGATGTTAAAGAGTATTGAACATAGAGAGGAGGAGAGGATAGCTCAAGAAGAAGAATGGAGGAAGCAACAGGCGGCCAAGTTCGATCGAGAAGTGCATGAATTTTGGGCTAAGGAGAGAGCATGGGTTGAAAGCCGAGATGCTGCAATAATGGAGGCTCTAGGTACATTTTCAAGACCAGGAATTAGTAACCACGACAAGGACAAGGATGACATTTCAAAGCTTCAAATTCCTAATGATACTATTAACAGATGGACTGAACATGAGGTTGCAAGTTTAATAGAGCTGATCAGGACAAGCTTGGAACTCACAACTCAAGACTGTGGGTGTTTTAAGGAGGGCCTATGGGAGGAGATAGCTGCAAAAATGGGTTGCTTGGGCTATAGAAGAAGTGTAGGAGAGTGCAAAGAGAAATTGGAGAATATGAGTGTTTATCCCAGAATGACAGCAGAATGTAACAAGAAGCACAAACAAGATGCCAAAGCTAACATGTACCATGGCCAACTTTCTTGTTATGAAGGCCAGCAGGAAGTTTCGAAACGACGGCCGGATGGGATGGGGCTTCAACTAATGGATGGAGGGCTATCACCCTCAAGTTCTAATATGGATGTGAGCTCCAGCTCCTTTCACGTGCAGTTTAATGGAGGAGAAAACTTATGGGACAGATATGGAACTGTGAAGCTCGGCAAGGGAAAGAACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

566

Amino Acids

64.16

Weight (kDa)

6.2

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 146
AciI CCGC 2 cut(s) 234, 1067
AcoI YGGCCR 4 cut(s) 356, 1068, 1492, 1538
AcsI RAATTY 4 cut(s) 779, 946, 1094, 1221
AcvI CACGTG 1 cut(s) 1624
AfaI GTAC 4 cut(s) 527, 533, 1159, 1487
AfiI CCNNNNNNNGG 3 cut(s) 146, 1192, 1342
AflII CTTAAG 1 cut(s) 872
AflIII ACRYGT 1 cut(s) 1482
AgsI TTSAA 9 cut(s) 415, 658, 825, 1013, 1124, 1167, 1212, 1220, 1559
AjnI CCWGG 2 cut(s) 975, 1171
Alw21I GWGCWC 1 cut(s) 1610
Alw26I GTCTC 3 cut(s) 413, 457, 559
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 8 cut(s) 39, 356, 899, 1068, 1333, 1492, 1513, 1538
ApeKI GCWGC 8 cut(s) 31, 206, 230, 251, 254, 323, 1136, 1352
ApoI RAATTY 4 cut(s) 779, 946, 1094, 1221
AseI ATTAAT 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 434, 1333
AsuHPI GGTGA 2 cut(s) 479, 1572
AsuII TTCGAA 1 cut(s) 1529
AvaII GGWCC 1 cut(s) 434
BalI TGGCCA 2 cut(s) 358, 1494
BanII GRGCYC 1 cut(s) 1610
BbrPI CACGTG 1 cut(s) 1624
Bbv12I GWGCWC 1 cut(s) 1610
BbvI GCAGC 8 cut(s) 43, 217, 218, 238, 241, 310, 1123, 1339
BceAI ACGGC 2 cut(s) 211, 1553
BciT130I CCWGG 2 cut(s) 977, 1173
BciVI GTATCC 1 cut(s) 473
BclI TGATCA 3 cut(s) 157, 784, 1281
BcoDI GTCTC 3 cut(s) 413, 457, 559
BfaI CTAG 2 cut(s) 456, 1154
BfmI CTRYAG 2 cut(s) 583, 1375
BfrI CTTAAG 1 cut(s) 872
BfuI GTATCC 1 cut(s) 473
BglII AGATCT 2 cut(s) 22, 392
BmcAI AGTACT 1 cut(s) 533
Bme1390I CCNGG 2 cut(s) 977, 1173
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 2 cut(s) 434, 1333
BmiI GGNNCC 2 cut(s) 436, 869
BmrFI CCNGG 2 cut(s) 977, 1173
BmrI ACTGGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 1123, 1459
BmuI ACTGGG 1 cut(s) 46
BplI GAGNNNNNCTC 2 cut(s) 1021, 1053
BpmI CTGGAG 1 cut(s) 1594
Bpu10I CCTNAGC 1 cut(s) 1104
Bpu14I TTCGAA 1 cut(s) 1529
BpuEI CTTGAG 5 cut(s) 28, 404, 1023, 1293, 1570
BsaAI YACGTR 1 cut(s) 1624
BsaBI GATNNNNATC 1 cut(s) 816
BsaJI CCNNGG 3 cut(s) 798, 975, 1489
BsaXI ACNNNNNCTCC 2 cut(s) 983, 1013
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 1192, 1342
Bse118I RCCGGY 1 cut(s) 901
Bse1I ACTGG 2 cut(s) 52, 1693
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 2 cut(s) 977, 1173
BseDI CCNNGG 3 cut(s) 798, 975, 1489
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 3 cut(s) 146, 1192, 1342
BseNI ACTGG 2 cut(s) 52, 1693
BseRI GAGGAG 6 cut(s) 162, 502, 1037, 1040, 1358, 1653
BseX3I CGGCCG 1 cut(s) 1538
BseXI GCAGC 8 cut(s) 43, 217, 218, 238, 241, 310, 1123, 1339
BseYI CCCAGC 1 cut(s) 560
BsgI GTGCAG 2 cut(s) 225, 1646
Bsh1285I CGRYCG 2 cut(s) 1081, 1541
BshFI GGCC 8 cut(s) 41, 358, 901, 1070, 1335, 1494, 1515, 1540
BsiEI CGRYCG 2 cut(s) 1081, 1541
BsiHKAI GWGCWC 1 cut(s) 1610
BsiSI CCGG 3 cut(s) 28, 902, 1541
BslFI GGGAC 1 cut(s) 1667
BslI CCNNNNNNNGG 3 cut(s) 146, 1192, 1342
BsmAI GTCTC 3 cut(s) 413, 457, 559
BsmFI GGGAC 1 cut(s) 1667
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 8 cut(s) 41, 358, 901, 1070, 1335, 1494, 1515, 1540
Bsp119I TTCGAA 1 cut(s) 1529
Bsp1286I GDGCHC 1 cut(s) 1610
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 8 cut(s) 22, 157, 392, 619, 784, 817, 1078, 1281
Bsp19I CCATGG 1 cut(s) 1489
BspACI CCGC 2 cut(s) 234, 1067
BspANI GGCC 8 cut(s) 41, 358, 901, 1070, 1335, 1494, 1515, 1540
BspLI GGNNCC 2 cut(s) 436, 869
BspQI GCTCTTC 1 cut(s) 908
BspT104I TTCGAA 1 cut(s) 1529
BspTI CTTAAG 1 cut(s) 872
BsrFI RCCGGY 1 cut(s) 901
BsrGI TGTACA 1 cut(s) 525
BsrI ACTGG 2 cut(s) 52, 1693
BssAI RCCGGY 1 cut(s) 901
BssECI CCNNGG 3 cut(s) 798, 975, 1489
BssMI GATC 8 cut(s) 22, 157, 392, 619, 784, 817, 1078, 1281
BssT1I CCWWGG 1 cut(s) 1489
Bst2UI CCWGG 2 cut(s) 977, 1173
Bst4CI ACNGT 3 cut(s) 697, 1316, 1669
Bst6I CTCTTC 2 cut(s) 669, 908
BstAFI CTTAAG 1 cut(s) 872
BstAUI TGTACA 1 cut(s) 525
BstBAI YACGTR 1 cut(s) 1624
BstBI TTCGAA 1 cut(s) 1529
BstC8I GCNNGC 1 cut(s) 1517
BstDEI CTNAG 2 cut(s) 755, 1104
BstDSI CCRYGG 1 cut(s) 1489
BstENI CCTNNNNNAGG 1 cut(s) 1340
BstKTI GATC 8 cut(s) 25, 160, 395, 622, 787, 820, 1081, 1284
BstMAI GTCTC 3 cut(s) 413, 457, 559
BstMBI GATC 8 cut(s) 22, 157, 392, 619, 784, 817, 1078, 1281
BstMCI CGRYCG 2 cut(s) 1081, 1541
BstNI CCWGG 2 cut(s) 977, 1173
BstNSI RCATGY 1 cut(s) 1486
BstSCI CCNGG 2 cut(s) 975, 1171
BstSFI CTRYAG 2 cut(s) 583, 1375
BstV1I GCAGC 8 cut(s) 43, 217, 218, 238, 241, 310, 1123, 1339
BstX2I RGATCY 2 cut(s) 22, 392
BstXI CCANNNNNNTGG 1 cut(s) 491
BstYI RGATCY 2 cut(s) 22, 392
BstZI CGGCCG 1 cut(s) 1538
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 8 cut(s) 41, 358, 901, 1070, 1335, 1494, 1515, 1540
BtgI CCRYGG 1 cut(s) 1489
BtsIMutI CAGTG 1 cut(s) 693
Cac8I GCNNGC 1 cut(s) 1517
CaiI CAGNNNCTG 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 901
Cfr13I GGNCC 2 cut(s) 434, 1333
Csp6I GTAC 4 cut(s) 526, 532, 1158, 1486
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviQI GTAC 4 cut(s) 526, 532, 1158, 1486
DdeI CTNAG 2 cut(s) 755, 1104
DpnI GATC 8 cut(s) 24, 159, 394, 621, 786, 819, 1080, 1283
DpnII GATC 8 cut(s) 22, 157, 392, 619, 784, 817, 1078, 1281
EaeI YGGCCR 4 cut(s) 356, 1068, 1492, 1538
EagI CGGCCG 1 cut(s) 1538
Eam1104I CTCTTC 2 cut(s) 669, 908
EarI CTCTTC 2 cut(s) 669, 908
Ecl136II GAGCTC 1 cut(s) 1608
EclXI CGGCCG 1 cut(s) 1538
Eco130I CCWWGG 1 cut(s) 1489
Eco24I GRGCYC 1 cut(s) 1610
Eco47I GGWCC 1 cut(s) 434
Eco52I CGGCCG 1 cut(s) 1538
Eco53kI GAGCTC 1 cut(s) 1608
Eco72I CACGTG 1 cut(s) 1624
EcoICRI GAGCTC 1 cut(s) 1608
EcoNI CCTNNNNNAGG 1 cut(s) 1340
EcoO109I RGGNCCY 2 cut(s) 434, 1333
EcoRI GAATTC 1 cut(s) 946
EcoRII CCWGG 2 cut(s) 975, 1171
EcoT14I CCWWGG 1 cut(s) 1489
EcoT38I GRGCYC 1 cut(s) 1610
ErhI CCWWGG 1 cut(s) 1489
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 1 cut(s) 1667
FbaI TGATCA 3 cut(s) 157, 784, 1281
FriOI GRGCYC 1 cut(s) 1610
FspBI CTAG 2 cut(s) 456, 1154
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 1594
HaeIII GGCC 8 cut(s) 41, 358, 901, 1070, 1335, 1494, 1515, 1540
HapII CCGG 3 cut(s) 28, 902, 1541
HincII GTYRAC 2 cut(s) 642, 700
HindII GTYRAC 2 cut(s) 642, 700
HindIII AAGCTT 2 cut(s) 1214, 1291
HinfI GANTC 2 cut(s) 404, 853
HpaI GTTAAC 1 cut(s) 700
HpaII CCGG 3 cut(s) 28, 902, 1541
HphI GGTGA 2 cut(s) 479, 1572
Hpy166II GTNNAC 2 cut(s) 642, 700
Hpy188I TCNGA 3 cut(s) 429, 789, 802
Hpy8I GTNNAC 2 cut(s) 642, 700
Hpy99I CGWCG 1 cut(s) 1539
HpyAV CCTTC 3 cut(s) 389, 545, 1505
HpyCH4III ACNGT 3 cut(s) 697, 1316, 1669
HpyCH4IV ACGT 1 cut(s) 1623
HpyF3I CTNAG 2 cut(s) 755, 1104
HpySE526I ACGT 1 cut(s) 1623
Ksp22I TGATCA 3 cut(s) 157, 784, 1281
KspAI GTTAAC 1 cut(s) 700
Kzo9I GATC 8 cut(s) 22, 157, 392, 619, 784, 817, 1078, 1281
LguI GCTCTTC 1 cut(s) 908
LmnI GCTCC 4 cut(s) 277, 867, 1613, 1619
Lsp1109I GCAGC 8 cut(s) 43, 217, 218, 238, 241, 310, 1123, 1339
LweI GCATC 2 cut(s) 1123, 1459
MaeI CTAG 2 cut(s) 456, 1154
MaeII ACGT 1 cut(s) 1623
MaeIII GTNAC 2 cut(s) 1181, 1448
MalI GATC 8 cut(s) 24, 159, 394, 621, 786, 819, 1080, 1283
MboI GATC 8 cut(s) 22, 157, 392, 619, 784, 817, 1078, 1281
MboII GAAGA 8 cut(s) 155, 508, 656, 925, 1006, 1055, 1058, 1392
MflI RGATCY 2 cut(s) 22, 392
MhlI GDGCHC 1 cut(s) 1610
MlsI TGGCCA 2 cut(s) 358, 1494
MluNI TGGCCA 2 cut(s) 358, 1494
Mox20I TGGCCA 2 cut(s) 358, 1494
MscI TGGCCA 2 cut(s) 358, 1494
MseI TTAA 9 cut(s) 306, 699, 873, 906, 1001, 1239, 1271, 1326, 1632
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 2 cut(s) 358, 1494
MspA1I CMGCKG 3 cut(s) 34, 143, 251
MspCI CTTAAG 1 cut(s) 872
MspI CCGG 3 cut(s) 28, 902, 1541
MspR9I CCNGG 2 cut(s) 977, 1173
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 2 cut(s) 977, 1173
NcoI CCATGG 1 cut(s) 1489
NdeII GATC 8 cut(s) 22, 157, 392, 619, 784, 817, 1078, 1281
NlaIV GGNNCC 2 cut(s) 436, 869
NmeAIII GCCGAG 2 cut(s) 1154, 1656
NspI RCATGY 1 cut(s) 1486
NspV TTCGAA 1 cut(s) 1529
PciI ACATGT 1 cut(s) 1482
PciSI GCTCTTC 1 cut(s) 908
PctI GAATGC 1 cut(s) 325
PfeI GAWTC 2 cut(s) 404, 853
PflMI CCANNNNNTGG 1 cut(s) 146
Ple19I CGATCG 1 cut(s) 1081
PmaCI CACGTG 1 cut(s) 1624
PmlI CACGTG 1 cut(s) 1624
Ppu21I YACGTR 1 cut(s) 1624
PpuMI RGGWCCY 1 cut(s) 434
PscI ACATGT 1 cut(s) 1482
PshBI ATTAAT 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 1610
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 975, 1171
PspCI CACGTG 1 cut(s) 1624
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 2 cut(s) 975, 1171
PspN4I GGNNCC 2 cut(s) 436, 869
PspPI GGNCC 2 cut(s) 434, 1333
PspPPI RGGWCCY 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 2 cut(s) 22, 392
PvuI CGATCG 1 cut(s) 1081
PvuII CAGCTG 3 cut(s) 34, 143, 251
RsaI GTAC 4 cut(s) 527, 533, 1159, 1487
RsaNI GTAC 4 cut(s) 526, 532, 1158, 1486
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 1 cut(s) 1610
SapI GCTCTTC 1 cut(s) 908
SaqAI TTAA 9 cut(s) 306, 699, 873, 906, 1001, 1239, 1271, 1326, 1632
Sau3AI GATC 8 cut(s) 22, 157, 392, 619, 784, 817, 1078, 1281
Sau96I GGNCC 2 cut(s) 434, 1333
ScaI AGTACT 1 cut(s) 533
ScrFI CCNGG 2 cut(s) 977, 1173
SduI GDGCHC 1 cut(s) 1610
SfaNI GCATC 2 cut(s) 1123, 1459
SfcI CTRYAG 2 cut(s) 583, 1375
SfuI TTCGAA 1 cut(s) 1529
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 6 cut(s) 43, 383, 872, 1038, 1308, 1585
SmoI CTYRAG 6 cut(s) 43, 383, 872, 1038, 1308, 1585
SsiI CCGC 2 cut(s) 234, 1067
SspI AATATT 1 cut(s) 304
SspMI CTAG 2 cut(s) 456, 1154
SstI GAGCTC 1 cut(s) 1610
StyD4I CCNGG 2 cut(s) 975, 1171
StyI CCWWGG 1 cut(s) 1489
TaaI ACNGT 3 cut(s) 697, 1316, 1669
TaiI ACGT 1 cut(s) 1626
TaqI TCGA 4 cut(s) 603, 1077, 1081, 1529
TatI WGTACW 2 cut(s) 525, 531
TauI GCSGC 2 cut(s) 236, 1070
TfiI GAWTC 2 cut(s) 404, 853
Tru1I TTAA 9 cut(s) 306, 699, 873, 906, 1001, 1239, 1271, 1326, 1632
Tru9I TTAA 9 cut(s) 306, 699, 873, 906, 1001, 1239, 1271, 1326, 1632
TscAI CASTG 1 cut(s) 700
TseI GCWGC 8 cut(s) 31, 206, 230, 251, 254, 323, 1136, 1352
TspDTI ATGAA 8 cut(s) 155, 234, 332, 359, 462, 866, 1107, 1524
TspRI CASTG 1 cut(s) 700
Van91I CCANNNNNTGG 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 434
VspI ATTAAT 1 cut(s) 306
XagI CCTNNNNNAGG 1 cut(s) 1340
XapI RAATTY 4 cut(s) 779, 946, 1094, 1221
XceI RCATGY 1 cut(s) 1486
XspI CTAG 2 cut(s) 456, 1154
ZrmI AGTACT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.