Trihelix transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10000 AT3G10000 AT5G03680 |
| fragaria_vesca | FvH4_6g17990 FvH4_6g17990 FvH4_7g05970 |
| malus_domestica | MD02G1247700.v1.1 MD07G1068800.v1.1 MD12G1018900.v1.1 MD14G1016900.v1.1 |
| prunus_persica | Prupe.2G086500_v2.0.a1 Prupe.7G116400_v2.0.a1 |
| pyrus_communis | pycom02g21160 pycom07g05290 pycom12g01570 pycom14g01450 |
| rosa_chinensis | RchiOBHm_Chr1g0333231 RchiOBHm_Chr3g0472271 |
| rosa_laevigata | RLG00000024094 RLG00000029619 |
| rosa_multiflora | Rmu_sc0001214.1_g000051 Rmu_sc0008192.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00317680 Rroxscaffold_6G00409120 |
| rosa_rugosa | Rorug01G0108100 Rorug03G0123400 |
| rosa_samantha | Rh1AG131100 Rh1BG100500 Rh1CG125000 Rh1DG136500 Rh3AG175700 Rh3BG201200 Rh3CG192500 Rh3CG199600 Rh3CG199700 Rh3DG173800 |
| rosa_wichuraiana | Rw1G010840 Rw3G016550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 146 |
| AciI | CCGC | 2 cut(s) | 234, 1067 |
| AcoI | YGGCCR | 4 cut(s) | 356, 1068, 1492, 1538 |
| AcsI | RAATTY | 4 cut(s) | 779, 946, 1094, 1221 |
| AcvI | CACGTG | 1 cut(s) | 1624 |
| AfaI | GTAC | 4 cut(s) | 527, 533, 1159, 1487 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 146, 1192, 1342 |
| AflII | CTTAAG | 1 cut(s) | 872 |
| AflIII | ACRYGT | 1 cut(s) | 1482 |
| AgsI | TTSAA | 9 cut(s) | 415, 658, 825, 1013, 1124, 1167, 1212, 1220, 1559 |
| AjnI | CCWGG | 2 cut(s) | 975, 1171 |
| Alw21I | GWGCWC | 1 cut(s) | 1610 |
| Alw26I | GTCTC | 3 cut(s) | 413, 457, 559 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 254 |
| AoxI | GGCC | 8 cut(s) | 39, 356, 899, 1068, 1333, 1492, 1513, 1538 |
| ApeKI | GCWGC | 8 cut(s) | 31, 206, 230, 251, 254, 323, 1136, 1352 |
| ApoI | RAATTY | 4 cut(s) | 779, 946, 1094, 1221 |
| AseI | ATTAAT | 1 cut(s) | 306 |
| AspS9I | GGNCC | 2 cut(s) | 434, 1333 |
| AsuHPI | GGTGA | 2 cut(s) | 479, 1572 |
| AsuII | TTCGAA | 1 cut(s) | 1529 |
| AvaII | GGWCC | 1 cut(s) | 434 |
| BalI | TGGCCA | 2 cut(s) | 358, 1494 |
| BanII | GRGCYC | 1 cut(s) | 1610 |
| BbrPI | CACGTG | 1 cut(s) | 1624 |
| Bbv12I | GWGCWC | 1 cut(s) | 1610 |
| BbvI | GCAGC | 8 cut(s) | 43, 217, 218, 238, 241, 310, 1123, 1339 |
| BceAI | ACGGC | 2 cut(s) | 211, 1553 |
| BciT130I | CCWGG | 2 cut(s) | 977, 1173 |
| BciVI | GTATCC | 1 cut(s) | 473 |
| BclI | TGATCA | 3 cut(s) | 157, 784, 1281 |
| BcoDI | GTCTC | 3 cut(s) | 413, 457, 559 |
| BfaI | CTAG | 2 cut(s) | 456, 1154 |
| BfmI | CTRYAG | 2 cut(s) | 583, 1375 |
| BfrI | CTTAAG | 1 cut(s) | 872 |
| BfuI | GTATCC | 1 cut(s) | 473 |
| BglII | AGATCT | 2 cut(s) | 22, 392 |
| BmcAI | AGTACT | 1 cut(s) | 533 |
| Bme1390I | CCNGG | 2 cut(s) | 977, 1173 |
| Bme18I | GGWCC | 1 cut(s) | 434 |
| BmgT120I | GGNCC | 2 cut(s) | 434, 1333 |
| BmiI | GGNNCC | 2 cut(s) | 436, 869 |
| BmrFI | CCNGG | 2 cut(s) | 977, 1173 |
| BmrI | ACTGGG | 1 cut(s) | 46 |
| BmsI | GCATC | 2 cut(s) | 1123, 1459 |
| BmuI | ACTGGG | 1 cut(s) | 46 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1021, 1053 |
| BpmI | CTGGAG | 1 cut(s) | 1594 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1104 |
| Bpu14I | TTCGAA | 1 cut(s) | 1529 |
| BpuEI | CTTGAG | 5 cut(s) | 28, 404, 1023, 1293, 1570 |
| BsaAI | YACGTR | 1 cut(s) | 1624 |
| BsaBI | GATNNNNATC | 1 cut(s) | 816 |
| BsaJI | CCNNGG | 3 cut(s) | 798, 975, 1489 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 983, 1013 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 146, 1192, 1342 |
| Bse118I | RCCGGY | 1 cut(s) | 901 |
| Bse1I | ACTGG | 2 cut(s) | 52, 1693 |
| Bse8I | GATNNNNATC | 1 cut(s) | 816 |
| BseBI | CCWGG | 2 cut(s) | 977, 1173 |
| BseDI | CCNNGG | 3 cut(s) | 798, 975, 1489 |
| BseJI | GATNNNNATC | 1 cut(s) | 816 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 146, 1192, 1342 |
| BseNI | ACTGG | 2 cut(s) | 52, 1693 |
| BseRI | GAGGAG | 6 cut(s) | 162, 502, 1037, 1040, 1358, 1653 |
| BseX3I | CGGCCG | 1 cut(s) | 1538 |
| BseXI | GCAGC | 8 cut(s) | 43, 217, 218, 238, 241, 310, 1123, 1339 |
| BseYI | CCCAGC | 1 cut(s) | 560 |
| BsgI | GTGCAG | 2 cut(s) | 225, 1646 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1081, 1541 |
| BshFI | GGCC | 8 cut(s) | 41, 358, 901, 1070, 1335, 1494, 1515, 1540 |
| BsiEI | CGRYCG | 2 cut(s) | 1081, 1541 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1610 |
| BsiSI | CCGG | 3 cut(s) | 28, 902, 1541 |
| BslFI | GGGAC | 1 cut(s) | 1667 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 146, 1192, 1342 |
| BsmAI | GTCTC | 3 cut(s) | 413, 457, 559 |
| BsmFI | GGGAC | 1 cut(s) | 1667 |
| BsmI | GAATGC | 1 cut(s) | 325 |
| BsnI | GGCC | 8 cut(s) | 41, 358, 901, 1070, 1335, 1494, 1515, 1540 |
| Bsp119I | TTCGAA | 1 cut(s) | 1529 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1610 |
| Bsp1407I | TGTACA | 1 cut(s) | 525 |
| Bsp143I | GATC | 8 cut(s) | 22, 157, 392, 619, 784, 817, 1078, 1281 |
| Bsp19I | CCATGG | 1 cut(s) | 1489 |
| BspACI | CCGC | 2 cut(s) | 234, 1067 |
| BspANI | GGCC | 8 cut(s) | 41, 358, 901, 1070, 1335, 1494, 1515, 1540 |
| BspLI | GGNNCC | 2 cut(s) | 436, 869 |
| BspQI | GCTCTTC | 1 cut(s) | 908 |
| BspT104I | TTCGAA | 1 cut(s) | 1529 |
| BspTI | CTTAAG | 1 cut(s) | 872 |
| BsrFI | RCCGGY | 1 cut(s) | 901 |
| BsrGI | TGTACA | 1 cut(s) | 525 |
| BsrI | ACTGG | 2 cut(s) | 52, 1693 |
| BssAI | RCCGGY | 1 cut(s) | 901 |
| BssECI | CCNNGG | 3 cut(s) | 798, 975, 1489 |
| BssMI | GATC | 8 cut(s) | 22, 157, 392, 619, 784, 817, 1078, 1281 |
| BssT1I | CCWWGG | 1 cut(s) | 1489 |
| Bst2UI | CCWGG | 2 cut(s) | 977, 1173 |
| Bst4CI | ACNGT | 3 cut(s) | 697, 1316, 1669 |
| Bst6I | CTCTTC | 2 cut(s) | 669, 908 |
| BstAFI | CTTAAG | 1 cut(s) | 872 |
| BstAUI | TGTACA | 1 cut(s) | 525 |
| BstBAI | YACGTR | 1 cut(s) | 1624 |
| BstBI | TTCGAA | 1 cut(s) | 1529 |
| BstC8I | GCNNGC | 1 cut(s) | 1517 |
| BstDEI | CTNAG | 2 cut(s) | 755, 1104 |
| BstDSI | CCRYGG | 1 cut(s) | 1489 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1340 |
| BstKTI | GATC | 8 cut(s) | 25, 160, 395, 622, 787, 820, 1081, 1284 |
| BstMAI | GTCTC | 3 cut(s) | 413, 457, 559 |
| BstMBI | GATC | 8 cut(s) | 22, 157, 392, 619, 784, 817, 1078, 1281 |
| BstMCI | CGRYCG | 2 cut(s) | 1081, 1541 |
| BstNI | CCWGG | 2 cut(s) | 977, 1173 |
| BstNSI | RCATGY | 1 cut(s) | 1486 |
| BstSCI | CCNGG | 2 cut(s) | 975, 1171 |
| BstSFI | CTRYAG | 2 cut(s) | 583, 1375 |
| BstV1I | GCAGC | 8 cut(s) | 43, 217, 218, 238, 241, 310, 1123, 1339 |
| BstX2I | RGATCY | 2 cut(s) | 22, 392 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 491 |
| BstYI | RGATCY | 2 cut(s) | 22, 392 |
| BstZI | CGGCCG | 1 cut(s) | 1538 |
| BsuI | GTATCC | 1 cut(s) | 473 |
| BsuRI | GGCC | 8 cut(s) | 41, 358, 901, 1070, 1335, 1494, 1515, 1540 |
| BtgI | CCRYGG | 1 cut(s) | 1489 |
| BtsIMutI | CAGTG | 1 cut(s) | 693 |
| Cac8I | GCNNGC | 1 cut(s) | 1517 |
| CaiI | CAGNNNCTG | 1 cut(s) | 254 |
| Cfr10I | RCCGGY | 1 cut(s) | 901 |
| Cfr13I | GGNCC | 2 cut(s) | 434, 1333 |
| Csp6I | GTAC | 4 cut(s) | 526, 532, 1158, 1486 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 181, 216 |
| CviQI | GTAC | 4 cut(s) | 526, 532, 1158, 1486 |
| DdeI | CTNAG | 2 cut(s) | 755, 1104 |
| DpnI | GATC | 8 cut(s) | 24, 159, 394, 621, 786, 819, 1080, 1283 |
| DpnII | GATC | 8 cut(s) | 22, 157, 392, 619, 784, 817, 1078, 1281 |
| EaeI | YGGCCR | 4 cut(s) | 356, 1068, 1492, 1538 |
| EagI | CGGCCG | 1 cut(s) | 1538 |
| Eam1104I | CTCTTC | 2 cut(s) | 669, 908 |
| EarI | CTCTTC | 2 cut(s) | 669, 908 |
| Ecl136II | GAGCTC | 1 cut(s) | 1608 |
| EclXI | CGGCCG | 1 cut(s) | 1538 |
| Eco130I | CCWWGG | 1 cut(s) | 1489 |
| Eco24I | GRGCYC | 1 cut(s) | 1610 |
| Eco47I | GGWCC | 1 cut(s) | 434 |
| Eco52I | CGGCCG | 1 cut(s) | 1538 |
| Eco53kI | GAGCTC | 1 cut(s) | 1608 |
| Eco72I | CACGTG | 1 cut(s) | 1624 |
| EcoICRI | GAGCTC | 1 cut(s) | 1608 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1340 |
| EcoO109I | RGGNCCY | 2 cut(s) | 434, 1333 |
| EcoRI | GAATTC | 1 cut(s) | 946 |
| EcoRII | CCWGG | 2 cut(s) | 975, 1171 |
| EcoT14I | CCWWGG | 1 cut(s) | 1489 |
| EcoT38I | GRGCYC | 1 cut(s) | 1610 |
| ErhI | CCWWGG | 1 cut(s) | 1489 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 357, 389 |
| FaqI | GGGAC | 1 cut(s) | 1667 |
| FbaI | TGATCA | 3 cut(s) | 157, 784, 1281 |
| FriOI | GRGCYC | 1 cut(s) | 1610 |
| FspBI | CTAG | 2 cut(s) | 456, 1154 |
| GsaI | CCCAGC | 1 cut(s) | 564 |
| GsuI | CTGGAG | 1 cut(s) | 1594 |
| HaeIII | GGCC | 8 cut(s) | 41, 358, 901, 1070, 1335, 1494, 1515, 1540 |
| HapII | CCGG | 3 cut(s) | 28, 902, 1541 |
| HincII | GTYRAC | 2 cut(s) | 642, 700 |
| HindII | GTYRAC | 2 cut(s) | 642, 700 |
| HindIII | AAGCTT | 2 cut(s) | 1214, 1291 |
| HinfI | GANTC | 2 cut(s) | 404, 853 |
| HpaI | GTTAAC | 1 cut(s) | 700 |
| HpaII | CCGG | 3 cut(s) | 28, 902, 1541 |
| HphI | GGTGA | 2 cut(s) | 479, 1572 |
| Hpy166II | GTNNAC | 2 cut(s) | 642, 700 |
| Hpy188I | TCNGA | 3 cut(s) | 429, 789, 802 |
| Hpy8I | GTNNAC | 2 cut(s) | 642, 700 |
| Hpy99I | CGWCG | 1 cut(s) | 1539 |
| HpyAV | CCTTC | 3 cut(s) | 389, 545, 1505 |
| HpyCH4III | ACNGT | 3 cut(s) | 697, 1316, 1669 |
| HpyCH4IV | ACGT | 1 cut(s) | 1623 |
| HpyF3I | CTNAG | 2 cut(s) | 755, 1104 |
| HpySE526I | ACGT | 1 cut(s) | 1623 |
| Ksp22I | TGATCA | 3 cut(s) | 157, 784, 1281 |
| KspAI | GTTAAC | 1 cut(s) | 700 |
| Kzo9I | GATC | 8 cut(s) | 22, 157, 392, 619, 784, 817, 1078, 1281 |
| LguI | GCTCTTC | 1 cut(s) | 908 |
| LmnI | GCTCC | 4 cut(s) | 277, 867, 1613, 1619 |
| Lsp1109I | GCAGC | 8 cut(s) | 43, 217, 218, 238, 241, 310, 1123, 1339 |
| LweI | GCATC | 2 cut(s) | 1123, 1459 |
| MaeI | CTAG | 2 cut(s) | 456, 1154 |
| MaeII | ACGT | 1 cut(s) | 1623 |
| MaeIII | GTNAC | 2 cut(s) | 1181, 1448 |
| MalI | GATC | 8 cut(s) | 24, 159, 394, 621, 786, 819, 1080, 1283 |
| MboI | GATC | 8 cut(s) | 22, 157, 392, 619, 784, 817, 1078, 1281 |
| MboII | GAAGA | 8 cut(s) | 155, 508, 656, 925, 1006, 1055, 1058, 1392 |
| MflI | RGATCY | 2 cut(s) | 22, 392 |
| MhlI | GDGCHC | 1 cut(s) | 1610 |
| MlsI | TGGCCA | 2 cut(s) | 358, 1494 |
| MluNI | TGGCCA | 2 cut(s) | 358, 1494 |
| Mox20I | TGGCCA | 2 cut(s) | 358, 1494 |
| MscI | TGGCCA | 2 cut(s) | 358, 1494 |
| MseI | TTAA | 9 cut(s) | 306, 699, 873, 906, 1001, 1239, 1271, 1326, 1632 |
| MslI | CAYNNNNRTG | 1 cut(s) | 285 |
| Msp20I | TGGCCA | 2 cut(s) | 358, 1494 |
| MspA1I | CMGCKG | 3 cut(s) | 34, 143, 251 |
| MspCI | CTTAAG | 1 cut(s) | 872 |
| MspI | CCGG | 3 cut(s) | 28, 902, 1541 |
| MspR9I | CCNGG | 2 cut(s) | 977, 1173 |
| Mva1269I | GAATGC | 1 cut(s) | 325 |
| MvaI | CCWGG | 2 cut(s) | 977, 1173 |
| NcoI | CCATGG | 1 cut(s) | 1489 |
| NdeII | GATC | 8 cut(s) | 22, 157, 392, 619, 784, 817, 1078, 1281 |
| NlaIV | GGNNCC | 2 cut(s) | 436, 869 |
| NmeAIII | GCCGAG | 2 cut(s) | 1154, 1656 |
| NspI | RCATGY | 1 cut(s) | 1486 |
| NspV | TTCGAA | 1 cut(s) | 1529 |
| PciI | ACATGT | 1 cut(s) | 1482 |
| PciSI | GCTCTTC | 1 cut(s) | 908 |
| PctI | GAATGC | 1 cut(s) | 325 |
| PfeI | GAWTC | 2 cut(s) | 404, 853 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 146 |
| Ple19I | CGATCG | 1 cut(s) | 1081 |
| PmaCI | CACGTG | 1 cut(s) | 1624 |
| PmlI | CACGTG | 1 cut(s) | 1624 |
| Ppu21I | YACGTR | 1 cut(s) | 1624 |
| PpuMI | RGGWCCY | 1 cut(s) | 434 |
| PscI | ACATGT | 1 cut(s) | 1482 |
| PshBI | ATTAAT | 1 cut(s) | 306 |
| Psp124BI | GAGCTC | 1 cut(s) | 1610 |
| Psp5II | RGGWCCY | 1 cut(s) | 434 |
| Psp6I | CCWGG | 2 cut(s) | 975, 1171 |
| PspCI | CACGTG | 1 cut(s) | 1624 |
| PspFI | CCCAGC | 1 cut(s) | 560 |
| PspGI | CCWGG | 2 cut(s) | 975, 1171 |
| PspN4I | GGNNCC | 2 cut(s) | 436, 869 |
| PspPI | GGNCC | 2 cut(s) | 434, 1333 |
| PspPPI | RGGWCCY | 1 cut(s) | 434 |
| PstNI | CAGNNNCTG | 1 cut(s) | 254 |
| PsuI | RGATCY | 2 cut(s) | 22, 392 |
| PvuI | CGATCG | 1 cut(s) | 1081 |
| PvuII | CAGCTG | 3 cut(s) | 34, 143, 251 |
| RsaI | GTAC | 4 cut(s) | 527, 533, 1159, 1487 |
| RsaNI | GTAC | 4 cut(s) | 526, 532, 1158, 1486 |
| RseI | CAYNNNNRTG | 1 cut(s) | 285 |
| SacI | GAGCTC | 1 cut(s) | 1610 |
| SapI | GCTCTTC | 1 cut(s) | 908 |
| SaqAI | TTAA | 9 cut(s) | 306, 699, 873, 906, 1001, 1239, 1271, 1326, 1632 |
| Sau3AI | GATC | 8 cut(s) | 22, 157, 392, 619, 784, 817, 1078, 1281 |
| Sau96I | GGNCC | 2 cut(s) | 434, 1333 |
| ScaI | AGTACT | 1 cut(s) | 533 |
| ScrFI | CCNGG | 2 cut(s) | 977, 1173 |
| SduI | GDGCHC | 1 cut(s) | 1610 |
| SfaNI | GCATC | 2 cut(s) | 1123, 1459 |
| SfcI | CTRYAG | 2 cut(s) | 583, 1375 |
| SfuI | TTCGAA | 1 cut(s) | 1529 |
| SinI | GGWCC | 1 cut(s) | 434 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 285 |
| SmlI | CTYRAG | 6 cut(s) | 43, 383, 872, 1038, 1308, 1585 |
| SmoI | CTYRAG | 6 cut(s) | 43, 383, 872, 1038, 1308, 1585 |
| SsiI | CCGC | 2 cut(s) | 234, 1067 |
| SspI | AATATT | 1 cut(s) | 304 |
| SspMI | CTAG | 2 cut(s) | 456, 1154 |
| SstI | GAGCTC | 1 cut(s) | 1610 |
| StyD4I | CCNGG | 2 cut(s) | 975, 1171 |
| StyI | CCWWGG | 1 cut(s) | 1489 |
| TaaI | ACNGT | 3 cut(s) | 697, 1316, 1669 |
| TaiI | ACGT | 1 cut(s) | 1626 |
| TaqI | TCGA | 4 cut(s) | 603, 1077, 1081, 1529 |
| TatI | WGTACW | 2 cut(s) | 525, 531 |
| TauI | GCSGC | 2 cut(s) | 236, 1070 |
| TfiI | GAWTC | 2 cut(s) | 404, 853 |
| Tru1I | TTAA | 9 cut(s) | 306, 699, 873, 906, 1001, 1239, 1271, 1326, 1632 |
| Tru9I | TTAA | 9 cut(s) | 306, 699, 873, 906, 1001, 1239, 1271, 1326, 1632 |
| TscAI | CASTG | 1 cut(s) | 700 |
| TseI | GCWGC | 8 cut(s) | 31, 206, 230, 251, 254, 323, 1136, 1352 |
| TspDTI | ATGAA | 8 cut(s) | 155, 234, 332, 359, 462, 866, 1107, 1524 |
| TspRI | CASTG | 1 cut(s) | 700 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 146 |
| Vha464I | CTTAAG | 1 cut(s) | 872 |
| VpaK11BI | GGWCC | 1 cut(s) | 434 |
| VspI | ATTAAT | 1 cut(s) | 306 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1340 |
| XapI | RAATTY | 4 cut(s) | 779, 946, 1094, 1221 |
| XceI | RCATGY | 1 cut(s) | 1486 |
| XspI | CTAG | 2 cut(s) | 456, 1154 |
| ZrmI | AGTACT | 1 cut(s) | 533 |