Rorug01G0108100
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002927
Physical Location & Seq
Reverse (-)
19371393 .. 19371917
525 bp
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UTR
Exon/CDS
Intron
Rorug01G0108100.1

Sequence Viewer

Length: 525 bp
ATGAGCCTCCCTCACTTGAGGTCTCTTACCAAGACACTCTGCTTTGACGTGGCTCACCCTCAGAGATCATGGCGTGAACTTGAAACCGTGTTGGATTATGATATTCCTTCCCAACGCTACAACAGGGCTTTAGTTTTGGACTTGGAGGATGACCGTGAGAAACTAGTTTTTACATATGATTCTTCTTACCAAATACTAGTCCATCACATGCTGCTGTCCACTAATGGTGAACCTAATTTTATTGAACTAGTAGCTGAGATTGATTTGCCTGATGATTTTAGAGGAAACTCATACGGTTGTGCCCATCTTGGAGGTCAAAAAGTATGCTTTTCATTCTTGCATATGAACGCTGCTTATTTTGCAACTCTTCTTGTCTTGACTTTCGAATTTTCCTATTCGAAATCTGATGCTGGTAGTCCTCCTGATGTAAGTAGCAGCATTGCTAGTGATTCAAAATTTCTAAGTTGTACCTCGATTTGTGGATCATTCTCTGCCAAAGCCCTGGGTTGTCGCCTGTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

174

Amino Acids

19.52

Weight (kDa)

5.42

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 490
AcsI RAATTY 2 cut(s) 386, 455
AfaI GTAC 1 cut(s) 469
AgsI TTSAA 4 cut(s) 83, 245, 453, 520
AhlI ACTAGT 3 cut(s) 163, 196, 247
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 1 cut(s) 501
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 490
ApeKI GCWGC 3 cut(s) 211, 350, 435
ApoI RAATTY 2 cut(s) 386, 455
AsuHPI GGTGA 2 cut(s) 47, 239
AsuII TTCGAA 2 cut(s) 384, 398
BaeGI GKGCMC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 198, 337, 447
BccI CCATC 2 cut(s) 210, 312
BciT130I CCWGG 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 27
BcuI ACTAGT 3 cut(s) 163, 196, 247
BfaI CTAG 4 cut(s) 164, 197, 248, 444
BisI GCNGC 3 cut(s) 212, 351, 436
BlsI GCNGC 3 cut(s) 213, 352, 437
Bme1390I CCNGG 1 cut(s) 503
BmgBI CACGTC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 503
BmsI GCATC 1 cut(s) 397
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu14I TTCGAA 2 cut(s) 384, 398
BpuEI CTTGAG 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 501, 502
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 2 cut(s) 501, 502
BseGI GGATG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 2 cut(s) 74, 246
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 3 cut(s) 198, 337, 447
BsmAI GTCTC 1 cut(s) 27
Bso31I GGTCTC 1 cut(s) 27
Bsp119I TTCGAA 2 cut(s) 384, 398
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 2 cut(s) 65, 482
BspCNI CTCAG 2 cut(s) 73, 247
BspPI GGATC 1 cut(s) 490
BspT104I TTCGAA 2 cut(s) 384, 398
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 438
BssECI CCNNGG 2 cut(s) 501, 502
BssMI GATC 2 cut(s) 65, 482
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 3 cut(s) 88, 155, 296
Bst6I CTCTTC 1 cut(s) 372
BstBI TTCGAA 2 cut(s) 384, 398
BstDEI CTNAG 3 cut(s) 60, 255, 461
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 2 cut(s) 68, 485
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 65, 482
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 1 cut(s) 503
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 501
BstSLI GKGCMC 1 cut(s) 304
BstV1I GCAGC 3 cut(s) 198, 337, 447
BstXI CCANNNNNNTGG 1 cut(s) 502
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 154
Csp6I GTAC 1 cut(s) 468
CviAII CATG 2 cut(s) 69, 208
CviJI RGCY 5 cut(s) 6, 53, 128, 254, 500
CviKI_1 RGCY 5 cut(s) 6, 53, 128, 254, 500
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 3 cut(s) 60, 255, 461
DpnI GATC 2 cut(s) 67, 484
DpnII GATC 2 cut(s) 65, 482
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 501
FaeI CATG 2 cut(s) 72, 211
FaiI YATR 9 cut(s) 70, 99, 175, 177, 209, 292, 325, 342, 344
FatI CATG 2 cut(s) 68, 207
FauNDI CATATG 2 cut(s) 175, 342
Fnu4HI GCNGC 3 cut(s) 212, 351, 436
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 212, 351, 436
FspBI CTAG 4 cut(s) 164, 197, 248, 444
GluI GCNGC 3 cut(s) 212, 351, 436
Hin1II CATG 2 cut(s) 72, 211
HinfI GANTC 2 cut(s) 179, 449
HphI GGTGA 2 cut(s) 47, 239
Hpy166II GTNNAC 3 cut(s) 77, 219, 230
Hpy188I TCNGA 2 cut(s) 63, 406
Hpy188III TCNNGA 2 cut(s) 376, 422
Hpy8I GTNNAC 3 cut(s) 77, 219, 230
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 3 cut(s) 88, 155, 296
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 340, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 3 cut(s) 60, 255, 461
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 2 cut(s) 72, 211
Kzo9I GATC 2 cut(s) 65, 482
LpnPI CCDG 6 cut(s) 109, 282, 396, 435, 488, 515
Lsp1109I GCAGC 3 cut(s) 198, 337, 447
LweI GCATC 1 cut(s) 397
MaeI CTAG 4 cut(s) 164, 197, 248, 444
MaeII ACGT 1 cut(s) 48
MalI GATC 2 cut(s) 67, 484
MboI GATC 2 cut(s) 65, 482
MboII GAAGA 2 cut(s) 174, 359
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 3 cut(s) 235, 386, 455
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 9 cut(s) 12, 17, 21, 69, 139, 275, 305, 429, 481
MspR9I CCNGG 1 cut(s) 503
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeI CATATG 2 cut(s) 175, 342
NdeII GATC 2 cut(s) 65, 482
NlaIII CATG 2 cut(s) 72, 211
NspI RCATGY 1 cut(s) 211
NspV TTCGAA 2 cut(s) 384, 398
PasI CCCWGGG 1 cut(s) 502
PfeI GAWTC 2 cut(s) 179, 449
PkrI GCNGC 3 cut(s) 213, 352, 437
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
SatI GCNGC 3 cut(s) 212, 351, 436
Sau3AI GATC 2 cut(s) 65, 482
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 1 cut(s) 304
SetI ASST 6 cut(s) 23, 51, 235, 256, 316, 473
SfaNI GCATC 1 cut(s) 397
SfuI TTCGAA 2 cut(s) 384, 398
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SpeI ACTAGT 3 cut(s) 163, 196, 247
Sse9I AATT 3 cut(s) 235, 386, 455
SspMI CTAG 4 cut(s) 164, 197, 248, 444
StyD4I CCNGG 1 cut(s) 501
TaaI ACNGT 3 cut(s) 88, 155, 296
TaiI ACGT 1 cut(s) 51
TaqI TCGA 3 cut(s) 384, 398, 473
TasI AATT 3 cut(s) 235, 386, 455
TfiI GAWTC 2 cut(s) 179, 449
TseI GCWGC 3 cut(s) 211, 350, 435
TspDTI ATGAA 2 cut(s) 321, 359
XapI RAATTY 2 cut(s) 386, 455
XceI RCATGY 1 cut(s) 211
XspI CTAG 4 cut(s) 164, 197, 248, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.