Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002927

Physical Location & Seq

Genomic Coordinates Reverse (-)

17881010 .. 17882260

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG199600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGTGTGAGGAACATGGGTATCAAAGAAGCGGAAAAAAATGCAGGGAAAAATTCGAAAACTTATACAAGTATTACAAGAAGACAAAGGAAGGGAAGGCCGGAAGACAAGATGGAAAGCACTATAGATTCTTTCGGCAGCTTGAAGCTCTCTATGGCGAAACTAGCAACAACATTGCCGTCTCATCACTCCCACCAGATCAATCCCATTTCGTCGGTAATAATAATATCAATAACAATAATAATACTTTTCGTTATCAAGCTCAACCGAGTCATCAAGATACTACTACCGCTACTACTTATCAGTCCACTCAAAGCGTCTCGAACTCTTCCGATTTCGAGGACTCGTCTTCCTCGGAGGACAACGACGGCAGTGCCATTGCTCCGATGGACGATGAAGTGCTTGAGATGAAGAGGACGAGGAAGAGGAGGGGATGGAAGGTAAAGATAAAGGAGTTTATCGACGTGCAAATGAGGAAGATGATGGAGAAGCAAGAGGAGTGGTTGGAGAAGCTGATGGGCACGCTTGAGCAGAAAGAAAGGGAGAGGGTGTTGAGAGAGGAAGAGTGGCGAAAACAAGAGGCGGGCCGGGTGGAGCGAGAGCAGCAGTTTTGGGCTAAAGAGAGAGCTTGGATTGAAGCAAGGGATAAAGCTCTCATGGATGCATTGCAGAAATTAACAGGAAGTAGTACTAGTCATGAAGTAAAGACTTCTTCTTCAACCCCTGATCATGATCATGAGGATATTGTGAGTGAGCAAGAGACATGGCCGGAATGCGAGATTAACAAATTGATTCAGTTGAGAGGAAGCATGGAGTCGAGGTTTAGTACTAGTCAGAGAGGTGGGTGTGTGGAGGAAAGACTTTGGGAGGAGATAGCGGCGAAGATGAGTTGTTTGGGATATGAAAGGAGTGGAATGGTCTGCAAGGAGAAATGGGAGAGCATAAACTATGTGAGGAAGTGTTCCAAAGAGTTGTTCAGTAAGAAGAGGAAGGAGAACAATTCAAGGTCAAGCTCTTGTTACTTTGGGAACAATGAGTCAAATTCCTCATTGTATAGTAGTCAAGGAGGAGTCTATGCTACATGTGAAATGAATAATCATGAACAAGGTAATGGTGGTTCTCCCTCTAATAATCCAAATGTAGGCAATGCTGCAGTGGTGAACGACACTTGTTTTCCATTTTTGATGGGCGAAGGAGACAATTTGTGGGAGAACTACGGGTTGAAGCTCAGCAAGGGTAGCCAAAACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009909 GO:0010016 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045926 GO:0046620 GO:0046621 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048441 GO:0048442 GO:0048444 GO:0048446 GO:0048464 GO:0048465 GO:0048498 GO:0048519 GO:0048559 GO:0048560 GO:0048580 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090428 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090707 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

416

Amino Acids

47.95

Weight (kDa)

6.17

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	3 - 50	3.5e-09	Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4	PF13837	254 - 330	5.6e-13	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10000 AT3G10000 AT5G03680
fragaria_vesca	FvH4_6g17990 FvH4_6g17990 FvH4_7g05970
malus_domestica	MD02G1247700.v1.1 MD07G1068800.v1.1 MD12G1018900.v1.1 MD14G1016900.v1.1
prunus_persica	Prupe.2G086500_v2.0.a1 Prupe.7G116400_v2.0.a1
pyrus_communis	pycom02g21160 pycom07g05290 pycom12g01570 pycom14g01450
rosa_chinensis	RchiOBHm_Chr1g0333231 RchiOBHm_Chr3g0472271
rosa_laevigata	RLG00000024094 RLG00000029619
rosa_multiflora	Rmu_sc0001214.1_g000051 Rmu_sc0008192.1_g000003
rosa_roxburghii	Rroxscaffold_4G00317680 Rroxscaffold_6G00409120
rosa_rugosa	Rorug01G0108100 Rorug03G0123400
rosa_samantha	Rh1AG131100 Rh1BG100500 Rh1CG125000 Rh1DG136500 Rh3AG175700 Rh3BG201200 Rh3CG192500 Rh3CG199600 Rh3CG199700 Rh3DG173800
rosa_wichuraiana	Rw1G010840 Rw3G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	30, 288, 581, 875
AcoI	YGGCCR	1 cut(s)	764
AcsI	RAATTY	2 cut(s)	50, 1039
AfaI	GTAC	2 cut(s)	688, 826
AfiI	CCNNNNNNNGG	1 cut(s)	1139
AflIII	ACRYGT	1 cut(s)	1079
AgsI	TTSAA	5 cut(s)	143, 635, 717, 1002, 1222
AhlI	ACTAGT	2 cut(s)	689, 827
AjiI	CACGTC	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	956, 988
AluBI	AGCT	8 cut(s)	139, 146, 260, 511, 626, 650, 1011, 1225
AluI	AGCT	8 cut(s)	139, 146, 260, 511, 626, 650, 1011, 1225
Alw26I	GTCTC	4 cut(s)	184, 322, 752, 1188
AoxI	GGCC	3 cut(s)	96, 583, 764
ApeKI	GCWGC	3 cut(s)	136, 601, 1148
ApoI	RAATTY	2 cut(s)	50, 1039
AspS9I	GGNCC	1 cut(s)	583
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	1168
AsuII	TTCGAA	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	521
BaeI	ACNNNNGTAYC	1 cut(s)	35
BbsI	GAAGAC	3 cut(s)	86, 109, 339
BbvI	GCAGC	3 cut(s)	148, 613, 1135
BccI	CCATC	6 cut(s)	104, 379, 426, 475, 508, 1177
BceAI	ACGGC	2 cut(s)	161, 382
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BclI	TGATCA	2 cut(s)	724, 730
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	4 cut(s)	184, 322, 752, 1188
BcuI	ACTAGT	2 cut(s)	689, 827
BfaI	CTAG	3 cut(s)	162, 690, 828
BfmI	CTRYAG	2 cut(s)	121, 1149
BisI	GCNGC	4 cut(s)	137, 602, 876, 1149
BlpI	GCTNAGC	1 cut(s)	1226
BlsI	GCNGC	4 cut(s)	138, 603, 877, 1150
BmcAI	AGTACT	2 cut(s)	688, 826
Bme1390I	CCNGG	1 cut(s)	587
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	583
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	1 cut(s)	649
BpiI	GAAGAC	3 cut(s)	86, 109, 339
Bpu1102I	GCTNAGC	1 cut(s)	1226
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	2 cut(s)	422, 545
BpuMI	CCSGG	1 cut(s)	587
BsaBI	GATNNNNATC	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	351
BsaXI	ACNNNNNCTCC	4 cut(s)	533, 563, 803, 833
Bsc4I	CCNNNNNNNGG	1 cut(s)	1139
Bse1I	ACTGG	1 cut(s)	1246
Bse3DI	GCAATG	4 cut(s)	171, 375, 662, 1150
Bse8I	GATNNNNATC	1 cut(s)	729
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	437, 664
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	1 cut(s)	1139
BseMI	GCAATG	4 cut(s)	171, 375, 662, 1150
BseMII	CTCAG	1 cut(s)	1240
BseNI	ACTGG	1 cut(s)	1246
BseRI	GAGGAG	4 cut(s)	439, 509, 881, 1080
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	3 cut(s)	148, 613, 1135
BshFI	GGCC	3 cut(s)	98, 585, 766
BsiSI	CCGG	3 cut(s)	99, 586, 767
BslI	CCNNNNNNNGG	1 cut(s)	1139
BsmAI	GTCTC	4 cut(s)	184, 322, 752, 1188
BsmBI	CGTCTC	2 cut(s)	184, 322
BsmI	GAATGC	1 cut(s)	776
BsnI	GGCC	3 cut(s)	98, 585, 766
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	3 cut(s)	196, 724, 730
Bsp1720I	GCTNAGC	1 cut(s)	1226
BspACI	CCGC	4 cut(s)	30, 288, 581, 875
BspANI	GGCC	3 cut(s)	98, 585, 766
BspCNI	CTCAG	1 cut(s)	1239
BspHI	TCATGA	4 cut(s)	694, 727, 733, 1096
BspMAI	CTGCAG	1 cut(s)	1153
BspT104I	TTCGAA	1 cut(s)	54
BsrDI	GCAATG	4 cut(s)	171, 375, 662, 1150
BsrI	ACTGG	1 cut(s)	1246
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	196, 724, 730
Bst6I	CTCTTC	5 cut(s)	331, 404, 416, 555, 977
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	521, 583
BstDEI	CTNAG	1 cut(s)	1226
BstF5I	GGATG	2 cut(s)	437, 664
BstKTI	GATC	3 cut(s)	199, 727, 733
BstMAI	GTCTC	4 cut(s)	184, 322, 752, 1188
BstMBI	GATC	3 cut(s)	196, 724, 730
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 601, 1236
BstNSI	RCATGY	1 cut(s)	1083
BstSCI	CCNGG	1 cut(s)	585
BstSFI	CTRYAG	2 cut(s)	121, 1149
BstSLI	GKGCMC	1 cut(s)	521
BstV1I	GCAGC	3 cut(s)	148, 613, 1135
BstV2I	GAAGAC	3 cut(s)	86, 109, 339
BsuRI	GGCC	3 cut(s)	98, 585, 766
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	437, 664
BtsI	GCAGTG	2 cut(s)	376, 1158
BtsIMutI	CAGTG	2 cut(s)	376, 1158
Cac8I	GCNNGC	2 cut(s)	521, 583
CciI	TCATGA	4 cut(s)	694, 727, 733, 1096
Cfr13I	GGNCC	1 cut(s)	583
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	687, 825
CspCI	CAANNNNNGTGG	2 cut(s)	479, 514
CviAII	CATG	9 cut(s)	14, 655, 695, 728, 734, 762, 808, 1080, 1097
CviQI	GTAC	2 cut(s)	687, 825
DdeI	CTNAG	1 cut(s)	1226
DpnI	GATC	3 cut(s)	198, 726, 732
DpnII	GATC	3 cut(s)	196, 724, 730
EaeI	YGGCCR	1 cut(s)	764
Eam1104I	CTCTTC	5 cut(s)	331, 404, 416, 555, 977
EarI	CTCTTC	5 cut(s)	331, 404, 416, 555, 977
EcoT22I	ATGCAT	1 cut(s)	664
Esp3I	CGTCTC	2 cut(s)	184, 322
FaeI	CATG	9 cut(s)	17, 658, 698, 731, 737, 765, 811, 1083, 1100
FatI	CATG	9 cut(s)	13, 654, 694, 727, 733, 761, 807, 1079, 1096
FauI	CCCGC	1 cut(s)	574
FbaI	TGATCA	2 cut(s)	724, 730
Fnu4HI	GCNGC	4 cut(s)	137, 602, 876, 1149
FokI	GGATG	2 cut(s)	444, 671
Fsp4HI	GCNGC	4 cut(s)	137, 602, 876, 1149
FspBI	CTAG	3 cut(s)	162, 690, 828
GluI	GCNGC	4 cut(s)	137, 602, 876, 1149
HaeIII	GGCC	3 cut(s)	98, 585, 766
HapII	CCGG	3 cut(s)	99, 586, 767
HgaI	GACGC	1 cut(s)	304
Hin1II	CATG	9 cut(s)	17, 658, 698, 731, 737, 765, 811, 1083, 1100
HinfI	GANTC	7 cut(s)	126, 268, 341, 790, 812, 1034, 1068
HpaII	CCGG	3 cut(s)	99, 586, 767
HphI	GGTGA	1 cut(s)	1168
Hpy166II	GTNNAC	2 cut(s)	306, 1159
Hpy188I	TCNGA	4 cut(s)	331, 355, 384, 834
Hpy188III	TCNNGA	6 cut(s)	275, 319, 695, 728, 734, 1097
Hpy8I	GTNNAC	2 cut(s)	306, 1159
Hpy99I	CGWCG	3 cut(s)	215, 368, 464
HpyAV	CCTTC	5 cut(s)	83, 88, 430, 982, 1184
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	6 cut(s)	42, 466, 662, 667, 921, 1151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 601, 1236
HpyF3I	CTNAG	1 cut(s)	1226
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	9 cut(s)	17, 658, 698, 731, 737, 765, 811, 1083, 1100
Ksp22I	TGATCA	2 cut(s)	724, 730
Kzo9I	GATC	3 cut(s)	196, 724, 730
LmnI	GCTCC	2 cut(s)	385, 592
LpnPI	CCDG	7 cut(s)	28, 112, 207, 599, 663, 735, 780
Lsp1109I	GCAGC	3 cut(s)	148, 613, 1135
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	3 cut(s)	162, 690, 828
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	1016
MalI	GATC	3 cut(s)	198, 726, 732
MboI	GATC	3 cut(s)	196, 724, 730
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	6 cut(s)	50, 671, 785, 997, 1039, 1198
MlyI	GAGTC	5 cut(s)	277, 335, 821, 1043, 1077
MmeI	TCCRAC	1 cut(s)	483
Mph1103I	ATGCAT	1 cut(s)	664
MseI	TTAA	2 cut(s)	674, 780
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	3 cut(s)	99, 586, 767
MspR9I	CCNGG	1 cut(s)	587
Mva1269I	GAATGC	1 cut(s)	776
MwoI	GCNNNNNNNGC	3 cut(s)	162, 601, 1236
NciI	CCSGG	1 cut(s)	587
NdeII	GATC	3 cut(s)	196, 724, 730
NlaIII	CATG	9 cut(s)	17, 658, 698, 731, 737, 765, 811, 1083, 1100
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	1 cut(s)	1083
NspV	TTCGAA	1 cut(s)	54
PagI	TCATGA	4 cut(s)	694, 727, 733, 1096
PciI	ACATGT	1 cut(s)	1079
PctI	GAATGC	1 cut(s)	776
PfeI	GAWTC	2 cut(s)	126, 790
PkrI	GCNGC	4 cut(s)	138, 603, 877, 1150
PleI	GAGTC	5 cut(s)	276, 335, 820, 1042, 1076
PpsI	GAGTC	5 cut(s)	276, 335, 820, 1042, 1076
PscI	ACATGT	1 cut(s)	1079
PspPI	GGNCC	1 cut(s)	583
PsrI	GAACNNNNNNTAC	2 cut(s)	1099, 1131
PstI	CTGCAG	1 cut(s)	1153
RsaI	GTAC	2 cut(s)	688, 826
RsaNI	GTAC	2 cut(s)	687, 825
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	674, 780
SatI	GCNGC	4 cut(s)	137, 602, 876, 1149
Sau3AI	GATC	3 cut(s)	196, 724, 730
Sau96I	GGNCC	1 cut(s)	583
ScaI	AGTACT	2 cut(s)	688, 826
SchI	GAGTC	5 cut(s)	277, 335, 821, 1043, 1077
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	649
SfcI	CTRYAG	2 cut(s)	121, 1149
SfuI	TTCGAA	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	2 cut(s)	401, 524
SmoI	CTYRAG	2 cut(s)	401, 524
SpeI	ACTAGT	2 cut(s)	689, 827
Sse9I	AATT	6 cut(s)	50, 671, 785, 997, 1039, 1198
SsiI	CCGC	4 cut(s)	30, 288, 581, 875
SspMI	CTAG	3 cut(s)	162, 690, 828
StyD4I	CCNGG	1 cut(s)	585
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	5 cut(s)	54, 320, 336, 459, 815
TasI	AATT	6 cut(s)	50, 671, 785, 997, 1039, 1198
TatI	WGTACW	2 cut(s)	686, 824
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	2 cut(s)	126, 790
Tru1I	TTAA	2 cut(s)	674, 780
Tru9I	TTAA	2 cut(s)	674, 780
TscAI	CASTG	2 cut(s)	376, 1158
TseI	GCWGC	3 cut(s)	136, 601, 1148
TspDTI	ATGAA	6 cut(s)	408, 422, 711, 915, 1103, 1113
TspRI	CASTG	2 cut(s)	376, 1158
XapI	RAATTY	2 cut(s)	50, 1039
XceI	RCATGY	1 cut(s)	1083
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	3 cut(s)	162, 690, 828
ZrmI	AGTACT	2 cut(s)	688, 826
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.