Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002927

Physical Location & Seq

Genomic Coordinates Reverse (-)

17882857 .. 17883375

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG199700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAAATGGAAGACCAGTATGGTTTAGGAGATCTCAGGCAGCTCATGAACGGAACTGGTAGGTCTCACTTCCCGGCCATCCAGACTCCGACGGAGCTCTTCCCCAGTAGCCACCACCATAGGCCTCAGCTCCTCGCTCCGGCCCATCATCATCATCATCATCATCATCAGCATCAGCAGCAGCAGCAGCATCCCTACGAAATCATGATGATGGGCCGGCTTCAGACCTCCCACGACATCATACCACGTGGGATTCATGAGTTTCGGTCTGCTGACTCGGCCGGTGGTTGTGGTGGTGGTGGTGGTGCTTGTACTAATAATACTGTTGCGGCTACTTCTTCTCTCAGTGGCGGCGGTGGTCTGGAGGCTGAGGGCGGAGGCTGTCTCGGCGGTGATGGCGGGTCCGGGAGGTGGCCGAGGCAAGAGACTCTCACGCTTCTGGAGATCCGGTCACGACTCGATTACAAGTTCAAAGAGGCTAATCAAAAAGGGCCGCTCTGGGATGAAGTCTCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009909 GO:0010016 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045926 GO:0046620 GO:0046621 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048441 GO:0048442 GO:0048444 GO:0048446 GO:0048464 GO:0048465 GO:0048498 GO:0048519 GO:0048559 GO:0048560 GO:0048580 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090428 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090707 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

172

Amino Acids

18.81

Weight (kDa)

6.44

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10000 AT3G10000 AT5G03680
fragaria_vesca	FvH4_6g17990 FvH4_6g17990 FvH4_7g05970
malus_domestica	MD02G1247700.v1.1 MD07G1068800.v1.1 MD12G1018900.v1.1 MD14G1016900.v1.1
prunus_persica	Prupe.2G086500_v2.0.a1 Prupe.7G116400_v2.0.a1
pyrus_communis	pycom02g21160 pycom07g05290 pycom12g01570 pycom14g01450
rosa_chinensis	RchiOBHm_Chr1g0333231 RchiOBHm_Chr3g0472271
rosa_laevigata	RLG00000024094 RLG00000029619
rosa_multiflora	Rmu_sc0001214.1_g000051 Rmu_sc0008192.1_g000003
rosa_roxburghii	Rroxscaffold_4G00317680 Rroxscaffold_6G00409120
rosa_rugosa	Rorug01G0108100 Rorug03G0123400
rosa_samantha	Rh1AG131100 Rh1BG100500 Rh1CG125000 Rh1DG136500 Rh3AG175700 Rh3BG201200 Rh3CG192500 Rh3CG199600 Rh3CG199700 Rh3DG173800
rosa_wichuraiana	Rw1G010840 Rw3G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	496
AciI	CCGC	7 cut(s)	329, 351, 354, 375, 390, 399, 494
AclWI	GGATC	1 cut(s)	439
AcoI	YGGCCR	3 cut(s)	75, 279, 413
AcuI	CTGAAG	1 cut(s)	206
AcvI	CACGTG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	2 cut(s)	139, 411
AgsI	TTSAA	1 cut(s)	472
AluBI	AGCT	3 cut(s)	43, 97, 130
AluI	AGCT	3 cut(s)	43, 97, 130
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	4 cut(s)	69, 389, 419, 514
AlwI	GGATC	1 cut(s)	439
AoxI	GGCC	7 cut(s)	75, 122, 141, 214, 279, 413, 491
ApeKI	GCWGC	5 cut(s)	40, 178, 181, 184, 187
AspS9I	GGNCC	4 cut(s)	142, 214, 402, 491
AsuC2I	CCSGG	2 cut(s)	74, 406
AsuHPI	GGTGA	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	99
BbrPI	CACGTG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	99
BbvCI	CCTCAGC	2 cut(s)	126, 369
BbvI	GCAGC	5 cut(s)	52, 190, 193, 196, 199
BccI	CCATC	4 cut(s)	86, 153, 205, 389
BcnI	CCSGG	2 cut(s)	74, 406
BcoDI	GTCTC	4 cut(s)	69, 389, 419, 514
BfaI	CTAG	1 cut(s)	513
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	8 cut(s)	41, 179, 182, 185, 188, 330, 352, 494
BlsI	GCNGC	8 cut(s)	42, 180, 183, 186, 189, 331, 353, 495
Bme1390I	CCNGG	2 cut(s)	74, 406
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	4 cut(s)	142, 214, 402, 491
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	74, 406
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	2 cut(s)	181, 199
BmuI	ACTGGG	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	369, 401
BpmI	CTGGAG	2 cut(s)	383, 461
Bpu10I	CCTNAGC	2 cut(s)	126, 369
BpuMI	CCSGG	2 cut(s)	74, 406
BsaAI	YACGTR	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	416
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 411
Bse118I	RCCGGY	2 cut(s)	216, 281
Bse1I	ACTGG	3 cut(s)	16, 61, 105
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	3 cut(s)	78, 190, 508
BseLI	CCNNNNNNNGG	2 cut(s)	139, 411
BseMII	CTCAG	4 cut(s)	49, 140, 358, 360
BseNI	ACTGG	3 cut(s)	16, 61, 105
BseRI	GAGGAG	1 cut(s)	122
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	5 cut(s)	52, 190, 193, 196, 199
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	7 cut(s)	77, 124, 143, 216, 281, 415, 493
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	6 cut(s)	74, 140, 217, 282, 405, 448
BslI	CCNNNNNNNGG	2 cut(s)	139, 411
BsmAI	GTCTC	4 cut(s)	69, 389, 419, 514
BsnI	GGCC	7 cut(s)	77, 124, 143, 216, 281, 415, 493
Bso31I	GGTCTC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	31, 444
BspACI	CCGC	7 cut(s)	329, 351, 354, 375, 390, 399, 494
BspANI	GGCC	7 cut(s)	77, 124, 143, 216, 281, 415, 493
BspCNI	CTCAG	4 cut(s)	48, 139, 357, 361
BspHI	TCATGA	3 cut(s)	45, 204, 256
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	439
BspQI	GCTCTTC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	69
BsrBI	CCGCTC	1 cut(s)	496
BsrFI	RCCGGY	2 cut(s)	216, 281
BsrI	ACTGG	3 cut(s)	16, 61, 105
BssAI	RCCGGY	2 cut(s)	216, 281
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	2 cut(s)	31, 444
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	218
BstDEI	CTNAG	4 cut(s)	35, 126, 344, 369
BstF5I	GGATG	3 cut(s)	78, 190, 508
BstKTI	GATC	2 cut(s)	34, 447
BstMAI	GTCTC	4 cut(s)	69, 389, 419, 514
BstMBI	GATC	2 cut(s)	31, 444
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 184, 187, 278, 387, 396
BstSCI	CCNGG	2 cut(s)	72, 404
BstV1I	GCAGC	5 cut(s)	52, 190, 193, 196, 199
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	31, 444
BstYI	RGATCY	2 cut(s)	31, 444
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	7 cut(s)	77, 124, 143, 216, 281, 415, 493
BtsCI	GGATG	3 cut(s)	78, 190, 508
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	218
CciI	TCATGA	3 cut(s)	45, 204, 256
Cfr10I	RCCGGY	2 cut(s)	216, 281
Cfr13I	GGNCC	4 cut(s)	142, 214, 402, 491
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	3 cut(s)	46, 205, 257
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	4 cut(s)	35, 126, 344, 369
DpnI	GATC	2 cut(s)	33, 446
DpnII	GATC	2 cut(s)	31, 444
EaeI	YGGCCR	3 cut(s)	75, 279, 413
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	390
Ecl136II	GAGCTC	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	402
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	206
Eco72I	CACGTG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	3 cut(s)	49, 208, 260
FaiI	YATR	6 cut(s)	21, 47, 120, 206, 242, 258
FatI	CATG	3 cut(s)	45, 204, 256
FauI	CCCGC	1 cut(s)	392
Fnu4HI	GCNGC	8 cut(s)	41, 179, 182, 185, 188, 330, 352, 494
FokI	GGATG	3 cut(s)	65, 177, 515
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	8 cut(s)	41, 179, 182, 185, 188, 330, 352, 494
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	8 cut(s)	41, 179, 182, 185, 188, 330, 352, 494
GsuI	CTGGAG	2 cut(s)	383, 461
HaeIII	GGCC	7 cut(s)	77, 124, 143, 216, 281, 415, 493
HapII	CCGG	6 cut(s)	74, 140, 217, 282, 405, 448
Hin1II	CATG	3 cut(s)	49, 208, 260
HinfI	GANTC	5 cut(s)	85, 253, 275, 427, 456
HpaII	CCGG	6 cut(s)	74, 140, 217, 282, 405, 448
HphI	GGTGA	1 cut(s)	404
Hpy188I	TCNGA	2 cut(s)	90, 225
Hpy188III	TCNNGA	7 cut(s)	46, 82, 205, 257, 362, 440, 453
Hpy99I	CGWCG	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 184, 187, 278, 387, 396
HpyF3I	CTNAG	4 cut(s)	35, 126, 344, 369
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	49, 208, 260
KroI	GCCGGC	1 cut(s)	216
KroNI	GCCGGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	31, 444
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	3 cut(s)	94, 135, 142
Lsp1109I	GCAGC	5 cut(s)	52, 190, 193, 196, 199
LweI	GCATC	2 cut(s)	181, 199
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	450
MalI	GATC	2 cut(s)	33, 446
MbiI	CCGCTC	1 cut(s)	496
MboI	GATC	2 cut(s)	31, 444
MboII	GAAGA	3 cut(s)	23, 91, 330
MflI	RGATCY	2 cut(s)	31, 444
MhlI	GDGCHC	1 cut(s)	99
MlyI	GAGTC	4 cut(s)	79, 269, 421, 450
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	9 cut(s)	135, 143, 238, 358, 364, 371, 402, 411, 469
MroNI	GCCGGC	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	209
MspI	CCGG	6 cut(s)	74, 140, 217, 282, 405, 448
MspR9I	CCNGG	2 cut(s)	74, 406
MwoI	GCNNNNNNNGC	6 cut(s)	178, 184, 187, 278, 387, 396
NaeI	GCCGGC	1 cut(s)	218
NciI	CCSGG	2 cut(s)	74, 406
NdeII	GATC	2 cut(s)	31, 444
NgoMIV	GCCGGC	1 cut(s)	216
NlaIII	CATG	3 cut(s)	49, 208, 260
NlaIV	GGNNCC	1 cut(s)	403
NmeAIII	GCCGAG	3 cut(s)	257, 366, 441
NmuCI	GTSAC	1 cut(s)	450
PagI	TCATGA	3 cut(s)	45, 204, 256
PceI	AGGCCT	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	104
PdiI	GCCGGC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	404
PkrI	GCNGC	8 cut(s)	42, 180, 183, 186, 189, 331, 353, 495
PleI	GAGTC	4 cut(s)	79, 269, 421, 450
PmaCI	CACGTG	1 cut(s)	248
PmlI	CACGTG	1 cut(s)	248
PpsI	GAGTC	4 cut(s)	79, 269, 421, 450
Ppu21I	YACGTR	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	99
PspCI	CACGTG	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	4 cut(s)	142, 214, 402, 491
PsuI	RGATCY	2 cut(s)	31, 444
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	104
SatI	GCNGC	8 cut(s)	41, 179, 182, 185, 188, 330, 352, 494
Sau3AI	GATC	2 cut(s)	31, 444
Sau96I	GGNCC	4 cut(s)	142, 214, 402, 491
SchI	GAGTC	4 cut(s)	79, 269, 421, 450
ScrFI	CCNGG	2 cut(s)	74, 406
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	8 cut(s)	45, 65, 99, 132, 230, 250, 413, 518
SfaNI	GCATC	2 cut(s)	181, 199
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	209
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	7 cut(s)	329, 351, 354, 375, 390, 399, 494
SspMI	CTAG	1 cut(s)	513
SstI	GAGCTC	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	72, 404
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	459
TaqII	GACCGA	1 cut(s)	255
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	3 cut(s)	332, 354, 496
TfiI	GAWTC	1 cut(s)	253
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	450
TseI	GCWGC	5 cut(s)	40, 178, 181, 184, 187
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	3 cut(s)	62, 245, 519
TspGWI	ACGGA	2 cut(s)	66, 107
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	402
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.