MD12G1018900.v1.1
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
1807099 .. 1810110
3012 bp
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UTR
Exon/CDS
Intron
MD12G1018900.v1.1.491

Sequence Viewer

Length: 1617 bp
ATGGAAATGGAAGATCAGTACAATATGTCCGATCTCCGTCAACTCATGAACGGAGGTCGGACCCACTTCCCCTCCATCCCACTACAACCCACAACCGAGCTCTTCCCGAACCACCACCGAGGTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCTTCATCACCAACACCATCCGTACGAGCAGCTCATGATGATAGACCGTTCTCAAGCCCACGAGATGATCCCTCGTGGGCTTCACCATCATCACGAGTTTCGCTCTCCGGACTCTACTAGTGCTGCAGGTGTAACTACTCCTACTACAGTTACGGCAGCTCCTTCTCTTAGTGGCGGTGGCTTGGAGGCTGAAGCTGGCGGGTGTCTTGGCGGTGAAGGGTCTGGAAGGTGGCCGAGGCAAGAGACTCTCACTCTTCTGGAGATCCGATCCGGGCTTGATTTTAAGTTCAAAGAGGCTAATCAGAAGGGTCCTCTCTGGGATGAAGTCTCTAGGATCATGTGTGAGGAACATGGGTATCAAAGAAGTGGGAAAAAATGTAGAGAGAAGTTTGAAAATTTGTACAAGTACTACAAGAAAACAAAGGAAGGAAAGGCTGGAAGACAAGATGGAAAGCATTATCGGTTCTTTCGACAGCTCGAAGCTCTCTATGGAGAAACTACCAATACCGTAGTCTCACCATCTTTGCCTGCAGAAACCCATTTCGTCGGTAATAATAGTAACAATTATCGTTACCAAGCAGCTGGCAATGCTCAAGCAAATCAAGAGATCACAACTCCCTATCATCATCAGTCATCTGATCAAAAGCACTGTGACAGCCTTAGCCTCTCGAATTCATCCGAGTTCGAAACCTCCTCCTCAGAAGATCAAGACATTAATAATGATGTCAGTGCAGCCGCAATGGACAATGATTCGCAGGAGGTGAAGACAACGAGGAAAAGAAGAGGAGGAATTGGACGGAGGGGTTGGAAGGCGAAGATAAAAGAGTTTATCGATGCACAAATGAGGAAGCTGATCGAGAAGCAAGAGGAGTGGTTGGAGAGGCTAATGAGGACCCTTGAGCAAAAGGAGAGGGAGAGGGTGGTGAGAGAGGAGGAGTGGAGGAAACAAGAAGTTGATAGGGTTGACAGAGAGCAAAATTTCTGGGCCAAAGAGAGGGCATGGATTGAAGCTAGGGATAAGGCTTTGATGGATGCACTGCACAAGATATCGGGAGGATCATCATCAACTGATCAAGCAAAAGCTACTAATTACAATTCTTCATCACCTGATCACAATGATCCTGATCAAATAGTTCATAACATGAGTAGGAGTGCCAAGGAGTTATTCATGAATAAGAAGCGAAAGGAGAATGCAAATTCGAGAAGCGCATCGGCAGCCTGTTACTTTCAGAGCAATGAGTCGTGTTCCTCATTGTATAGTAGTCAAGGAGGGTATTGTGGTGAAATGAGTAATGAACAAGGTAACCATGATGGTTCTAACAATTCTCCTAATGGTGGGAATAATGCAAGTAATGTGGGGAGCAATGCAGTGCCTGATAATTGTTTTCCGTTCTTGATGAGTGAGGGGGAGAACTTGTGGGAAAATTATGGATTGAAGCTGAGCAAGGGAAGCCAAAACCAGTGA

Protein Analysis

539

Amino Acids

60.78

Weight (kDa)

6.36

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 127 - 213 8.6e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 269
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 4 cut(s) 327, 351, 363, 888
AclWI GGATC 6 cut(s) 214, 409, 414, 494, 1216, 1265
AcoI YGGCCR 1 cut(s) 383
AcsI RAATTY 4 cut(s) 547, 823, 1129, 1348
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 4 cut(s) 20, 176, 554, 560
AfiI CCNNNNNNNGG 2 cut(s) 1146, 1487
AgsI TTSAA 4 cut(s) 442, 545, 1160, 1588
AhlI ACTAGT 1 cut(s) 269
AjuI GAANNNNNNNTTGG 2 cut(s) 1301, 1333
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 3 cut(s) 389, 484, 670
AlwI GGATC 6 cut(s) 214, 409, 414, 494, 1216, 1265
AlwNI CAGNNNCTG 1 cut(s) 1526
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 2 cut(s) 383, 1137
ApeKI GCWGC 6 cut(s) 181, 275, 308, 731, 884, 1367
ApoI RAATTY 4 cut(s) 547, 823, 1129, 1348
AseI ATTAAT 1 cut(s) 867
AspLEI GCGC 1 cut(s) 1361
AspS9I GGNCC 5 cut(s) 60, 122, 461, 1044, 1137
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 8 cut(s) 152, 227, 377, 660, 925, 1087, 1248, 1445
AsuII TTCGAA 1 cut(s) 837
AvaII GGWCC 4 cut(s) 60, 122, 461, 1044
BaeI ACNNNNGTAYC 2 cut(s) 491, 524
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 3 cut(s) 212, 225, 245
BbsI GAAGAC 2 cut(s) 598, 923
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 6 cut(s) 193, 262, 320, 743, 896, 1379
BccI CCATC 7 cut(s) 83, 177, 246, 593, 679, 1174, 1457
BceAI ACGGC 1 cut(s) 321
BclI TGATCA 4 cut(s) 790, 1222, 1261, 1276
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 3 cut(s) 389, 484, 670
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 3 cut(s) 270, 483, 1164
BfmI CTRYAG 3 cut(s) 276, 297, 681
BfuAI ACCTGC 1 cut(s) 269
BisI GCNGC 7 cut(s) 182, 276, 309, 732, 885, 888, 1368
BlpI GCTNAGC 1 cut(s) 1592
BlsI GCNGC 7 cut(s) 183, 277, 310, 733, 886, 889, 1369
BmcAI AGTACT 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 424
Bme18I GGWCC 4 cut(s) 60, 122, 461, 1044
BmgT120I GGNCC 5 cut(s) 60, 122, 461, 1044, 1137
BmiI GGNNCC 3 cut(s) 62, 462, 1046
BmrFI CCNGG 1 cut(s) 424
BmsI GCATC 3 cut(s) 976, 1174, 1370
BpiI GAAGAC 2 cut(s) 598, 923
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpmI CTGGAG 1 cut(s) 431
Bpu10I CCTNAGC 1 cut(s) 812
Bpu1102I GCTNAGC 1 cut(s) 1592
Bpu14I TTCGAA 1 cut(s) 837
BpuEI CTTGAG 3 cut(s) 189, 729, 1070
BpuMI CCSGG 1 cut(s) 424
Bsa29I ATCGAT 1 cut(s) 984
BsaBI GATNNNNATC 2 cut(s) 1213, 1275
BsaJI CCNNGG 3 cut(s) 118, 386, 1308
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 6 cut(s) 56, 86, 295, 325, 1553, 1583
Bsc4I CCNNNNNNNGG 2 cut(s) 1146, 1487
Bse1I ACTGG 1 cut(s) 1612
Bse3DI GCAATG 4 cut(s) 745, 897, 1393, 1522
Bse8I GATNNNNATC 2 cut(s) 1213, 1275
BseAI TCCGGA 1 cut(s) 259
BseCI ATCGAT 1 cut(s) 984
BseDI CCNNGG 3 cut(s) 118, 386, 1308
BseGI GGATG 5 cut(s) 75, 169, 478, 827, 1189
BseJI GATNNNNATC 2 cut(s) 1213, 1275
BseLI CCNNNNNNNGG 2 cut(s) 1146, 1487
BseMI GCAATG 4 cut(s) 745, 897, 1393, 1522
BseMII CTCAG 2 cut(s) 864, 1583
BseNI ACTGG 1 cut(s) 1612
BseXI GCAGC 6 cut(s) 193, 262, 320, 743, 896, 1379
BsgI GTGCAG 2 cut(s) 903, 1175
BshFI GGCC 2 cut(s) 385, 1139
BshVI ATCGAT 1 cut(s) 984
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 260, 423
BsiWI CGTACG 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 1146, 1487
BsmAI GTCTC 3 cut(s) 389, 484, 670
BsmI GAATGC 1 cut(s) 1348
BsnI GGCC 2 cut(s) 385, 1139
Bsp119I TTCGAA 1 cut(s) 837
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 552
Bsp1720I GCTNAGC 1 cut(s) 1592
BspACI CCGC 4 cut(s) 327, 351, 363, 888
BspANI GGCC 2 cut(s) 385, 1139
BspCNI CTCAG 2 cut(s) 863, 1584
BspDI ATCGAT 1 cut(s) 984
BspEI TCCGGA 1 cut(s) 259
BspHI TCATGA 3 cut(s) 45, 186, 1320
BspLI GGNNCC 3 cut(s) 62, 462, 1046
BspMAI CTGCAG 2 cut(s) 280, 685
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 6 cut(s) 214, 409, 414, 494, 1216, 1265
BspQI GCTCTTC 1 cut(s) 107
BspT104I TTCGAA 1 cut(s) 837
BsrDI GCAATG 4 cut(s) 745, 897, 1393, 1522
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 1 cut(s) 1612
BssECI CCNNGG 3 cut(s) 118, 386, 1308
BssSI CACGAG 3 cut(s) 212, 225, 245
BssT1I CCWWGG 1 cut(s) 1308
Bst2BI CACGAG 3 cut(s) 212, 225, 245
Bst4CI ACNGT 4 cut(s) 200, 301, 661, 803
Bst6I CTCTTC 4 cut(s) 107, 159, 411, 928
BstAUI TGTACA 1 cut(s) 552
BstBI TTCGAA 1 cut(s) 837
BstC8I GCNNGC 3 cut(s) 349, 681, 736
BstDEI CTNAG 4 cut(s) 320, 812, 850, 1592
BstEII GGTNACC 1 cut(s) 1454
BstF5I GGATG 5 cut(s) 75, 169, 478, 827, 1189
BstHHI GCGC 1 cut(s) 1361
BstMAI GTCTC 3 cut(s) 389, 484, 670
BstMWI GCNNNNNNNGC 3 cut(s) 740, 1367, 1602
BstPI GGTNACC 1 cut(s) 1454
BstSCI CCNGG 1 cut(s) 422
BstSFI CTRYAG 3 cut(s) 276, 297, 681
BstV1I GCAGC 6 cut(s) 193, 262, 320, 743, 896, 1379
BstV2I GAAGAC 2 cut(s) 598, 923
BstX2I RGATCY 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 734
BstYI RGATCY 1 cut(s) 414
Bsu15I ATCGAT 1 cut(s) 984
BsuRI GGCC 2 cut(s) 385, 1139
BsuTUI ATCGAT 1 cut(s) 984
BtsCI GGATG 5 cut(s) 75, 169, 478, 827, 1189
BtsI GCAGTG 2 cut(s) 1187, 1527
BtsIMutI CAGTG 4 cut(s) 799, 886, 1187, 1527
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 3 cut(s) 349, 681, 736
CaiI CAGNNNCTG 1 cut(s) 1526
CciI TCATGA 3 cut(s) 45, 186, 1320
CfoI GCGC 1 cut(s) 1361
Cfr13I GGNCC 5 cut(s) 60, 122, 461, 1044, 1137
ClaI ATCGAT 1 cut(s) 984
Csp6I GTAC 4 cut(s) 19, 175, 553, 559
CspCI CAANNNNNGTGG 4 cut(s) 1004, 1039, 1488, 1523
CviAII CATG 8 cut(s) 46, 187, 490, 503, 1152, 1294, 1321, 1460
CviQI GTAC 4 cut(s) 19, 175, 553, 559
DdeI CTNAG 4 cut(s) 320, 812, 850, 1592
EaeI YGGCCR 1 cut(s) 383
Eam1104I CTCTTC 4 cut(s) 107, 159, 411, 928
EarI CTCTTC 4 cut(s) 107, 159, 411, 928
Ecl136II GAGCTC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 1308
Eco24I GRGCYC 1 cut(s) 102
Eco32I GATATC 1 cut(s) 1200
Eco47I GGWCC 4 cut(s) 60, 122, 461, 1044
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 1454
EcoICRI GAGCTC 1 cut(s) 100
EcoO109I RGGNCCY 3 cut(s) 122, 461, 1044
EcoO65I GGTNACC 1 cut(s) 1454
EcoRI GAATTC 1 cut(s) 823
EcoRV GATATC 1 cut(s) 1200
EcoT14I CCWWGG 1 cut(s) 1308
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 1308
FaeI CATG 8 cut(s) 49, 190, 493, 506, 1155, 1297, 1324, 1463
FatI CATG 8 cut(s) 45, 186, 489, 502, 1151, 1293, 1320, 1459
FauI CCCGC 1 cut(s) 344
FbaI TGATCA 4 cut(s) 790, 1222, 1261, 1276
Fnu4HI GCNGC 7 cut(s) 182, 276, 309, 732, 885, 888, 1368
FokI GGATG 5 cut(s) 62, 156, 485, 814, 1196
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 7 cut(s) 182, 276, 309, 732, 885, 888, 1368
FspBI CTAG 3 cut(s) 270, 483, 1164
GlaI GCGC 1 cut(s) 1360
GluI GCNGC 7 cut(s) 182, 276, 309, 732, 885, 888, 1368
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 2 cut(s) 385, 1139
HapII CCGG 2 cut(s) 260, 423
HhaI GCGC 1 cut(s) 1361
Hin1II CATG 8 cut(s) 49, 190, 493, 506, 1155, 1297, 1324, 1463
Hin6I GCGC 1 cut(s) 1359
HinP1I GCGC 1 cut(s) 1359
HincII GTYRAC 2 cut(s) 41, 1117
HindII GTYRAC 2 cut(s) 41, 1117
HinfI GANTC 4 cut(s) 263, 397, 902, 1391
HpaII CCGG 2 cut(s) 260, 423
HphI GGTGA 8 cut(s) 152, 227, 377, 660, 925, 1087, 1248, 1445
Hpy166II GTNNAC 2 cut(s) 41, 1117
Hpy188I TCNGA 8 cut(s) 31, 60, 419, 456, 790, 832, 853, 1383
Hpy8I GTNNAC 2 cut(s) 41, 1117
Hpy99I CGWCG 1 cut(s) 701
HpyAV CCTTC 7 cut(s) 159, 324, 362, 372, 451, 572, 955
HpyCH4III ACNGT 4 cut(s) 200, 301, 661, 803
HpyCH4V TGCA 9 cut(s) 278, 683, 884, 989, 1187, 1192, 1346, 1499, 1520
HpyF10VI GCNNNNNNNGC 3 cut(s) 740, 1367, 1602
HpyF3I CTNAG 4 cut(s) 320, 812, 850, 1592
Hsp92II CATG 8 cut(s) 49, 190, 493, 506, 1155, 1297, 1324, 1463
HspAI GCGC 1 cut(s) 1359
Kpn2I TCCGGA 1 cut(s) 259
Ksp22I TGATCA 4 cut(s) 790, 1222, 1261, 1276
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 2 cut(s) 316, 1512
Lsp1109I GCAGC 6 cut(s) 193, 262, 320, 743, 896, 1379
LweI GCATC 3 cut(s) 976, 1174, 1370
MaeI CTAG 3 cut(s) 270, 483, 1164
MaeIII GTNAC 7 cut(s) 283, 301, 710, 722, 803, 1373, 1454
MflI RGATCY 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 102
MlyI GAGTC 3 cut(s) 257, 391, 1400
MmeI TCCRAC 3 cut(s) 38, 938, 1008
MroI TCCGGA 1 cut(s) 259
MseI TTAA 2 cut(s) 435, 867
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 2 cut(s) 260, 423
MspR9I CCNGG 1 cut(s) 424
Mva1269I GAATGC 1 cut(s) 1348
MwoI GCNNNNNNNGC 3 cut(s) 740, 1367, 1602
NciI CCSGG 1 cut(s) 424
NlaIII CATG 8 cut(s) 49, 190, 493, 506, 1155, 1297, 1324, 1463
NlaIV GGNNCC 3 cut(s) 62, 462, 1046
NmeAIII GCCGAG 1 cut(s) 411
NmuCI GTSAC 1 cut(s) 803
NspV TTCGAA 1 cut(s) 837
PagI TCATGA 3 cut(s) 45, 186, 1320
PaqCI CACCTGC 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 619
PctI GAATGC 1 cut(s) 1348
PfeI GAWTC 1 cut(s) 902
Pfl23II CGTACG 1 cut(s) 174
PkrI GCNGC 7 cut(s) 183, 277, 310, 733, 886, 889, 1369
PleI GAGTC 3 cut(s) 257, 391, 1399
PpsI GAGTC 3 cut(s) 257, 391, 1399
PpuMI RGGWCCY 3 cut(s) 122, 461, 1044
PshBI ATTAAT 1 cut(s) 867
Psp124BI GAGCTC 1 cut(s) 102
Psp5II RGGWCCY 3 cut(s) 122, 461, 1044
PspEI GGTNACC 1 cut(s) 1454
PspLI CGTACG 1 cut(s) 174
PspN4I GGNNCC 3 cut(s) 62, 462, 1046
PspPI GGNCC 5 cut(s) 60, 122, 461, 1044, 1137
PspPPI RGGWCCY 3 cut(s) 122, 461, 1044
PstI CTGCAG 2 cut(s) 280, 685
PstNI CAGNNNCTG 1 cut(s) 1526
PsuI RGATCY 1 cut(s) 414
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 4 cut(s) 20, 176, 554, 560
RsaNI GTAC 4 cut(s) 19, 175, 553, 559
SacI GAGCTC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 435, 867
SatI GCNGC 7 cut(s) 182, 276, 309, 732, 885, 888, 1368
Sau96I GGNCC 5 cut(s) 60, 122, 461, 1044, 1137
ScaI AGTACT 1 cut(s) 560
SchI GAGTC 3 cut(s) 257, 391, 1400
ScrFI CCNGG 1 cut(s) 424
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 3 cut(s) 976, 1174, 1370
SfcI CTRYAG 3 cut(s) 276, 297, 681
SfuI TTCGAA 1 cut(s) 837
SinI GGWCC 4 cut(s) 60, 122, 461, 1044
SmlI CTYRAG 3 cut(s) 204, 744, 1049
SmoI CTYRAG 3 cut(s) 204, 744, 1049
SpeI ACTAGT 1 cut(s) 269
SsiI CCGC 4 cut(s) 327, 351, 363, 888
SspMI CTAG 3 cut(s) 270, 483, 1164
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 422
StyI CCWWGG 1 cut(s) 1308
TaaI ACNGT 4 cut(s) 200, 301, 661, 803
TaqI TCGA 7 cut(s) 622, 630, 821, 837, 984, 1008, 1352
TatI WGTACW 3 cut(s) 18, 552, 558
TauI GCSGC 1 cut(s) 890
TfiI GAWTC 1 cut(s) 902
Tru1I TTAA 2 cut(s) 435, 867
Tru9I TTAA 2 cut(s) 435, 867
TscAI CASTG 4 cut(s) 806, 886, 1194, 1527
TseFI GTSAC 1 cut(s) 803
TseI GCWGC 6 cut(s) 181, 275, 308, 731, 884, 1367
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 9 cut(s) 62, 146, 489, 816, 1242, 1277, 1309, 1337, 1461
TspGWI ACGGA 5 cut(s) 26, 66, 162, 964, 1530
TspRI CASTG 4 cut(s) 806, 886, 1194, 1527
VpaK11BI GGWCC 4 cut(s) 60, 122, 461, 1044
VspI ATTAAT 1 cut(s) 867
XapI RAATTY 4 cut(s) 547, 823, 1129, 1348
XspI CTAG 3 cut(s) 270, 483, 1164
ZrmI AGTACT 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.