pycom02g21160
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002927
Physical Location & Seq
Forward (+)
19347353 .. 19349871
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g21160.2

Sequence Viewer

Length: 1710 bp
ATGGATGACTATGGACCTCCAGATCTGCGGCAGCTGATGGCCTCAAGAACCCAGTTTCATACGCCCTTACAATTCCCAGAGCAATTTTCAGTGCACCAAAATCTCACGCCACCACCGCCACCTCCGCCCCATTATCGTCATCTCCCCATAATGCTAAGCAGTGAGGTTGTTCCATCTGCTGGCTTGCTTGACAATCATCGTTATACTAGTATGATCACGACAACAGCTTGTCATCCTACCACTTCATCAGCTGCTTCTGCTGCTGCTGCATTGTATGGGATAGAGTTTGAGCATGGATGGAATAATATTGATGGAGCAAATACTAATAATAATAGTAGATGGCCAAGGCAAGAAACCCTTACCCTTCTTGAGATTAGATCTGCTCTTGATTCCAAGTTCAAGGAGACTAATCAGAAAGGACCTTTGTGGGATGAAGTCTCTAGGATAATGGCTGAGGAACATGGATTCCAGAGAACAGGGAAGAAATGCAAAGAAAAGTTTGAGAACTTGTATAAGTACTACAAGAAAACCAAGGAAGGCAAAACTGGGAGGCAAGATGGGAAGCACTATAGGTTCTTTCGTCAGCTTGAAGCAATTTATGGAAATCACCATCAAAGTACCAATCAGTCCTCCGTTTACAGTAGACCAAACCCTCTTCTTTGTCACACTACTCCGAGTAACAGTATTAACCGAGATCAAAATCAAGAAGTAGTTGTGCAAGACCAAAAGTTCATAAGCTGCGAGAGCCTTAGTTTCTCCAATAACTCAACTGAATTTGATCAAACCTCACCCTCAAAGAACAACGACGACGAGGATTCACTTTCAGCCATTGATTATTTTCCGATGAATCAGTCAACGGGGAGCCTTAAGAATGAGAAGAAAAGCTATGCGACACCGGTAAAGAAGAAATGGAAAGCAAAGGTGGTGGACTTTATGAACTCACAAATGGGGAAAGTAATAAAGACCCAGGAGGCATTGATGGAGAAGATGGTAAAGAGTATTGAAGCTAGTGCAGACGAGAGAATAGCTAAGGAAGAAGAATGGAGGAAGCAAGAGGCGGCCAAGTATGAGCGAGATGTACATGAGTTTTGGGCTAAAGAAAGGGCATGGGTTGAAACTCGAGACGCCGCGATAATGGAGACTCTAAGAAAATATACAGGCAAAGGAACTTACAACAACAGTGGCAAGGATGATATTGCAAAAGAAATTGGCAGTGATCACAGTAAGAATTATCCTAGATGGACTGAACACGAAGTTGCAAGTTTAATACAGCTGAAGACTAGCTTGGAACGAACATTCAAAGAAAGTGAGTATCTGAAGGAGGAGGGAGTATGGGAGGAGATAGCTGCAAATATGGGTAGTTTGGGCTACACAAGGAGTGGAGGAGAGTGTAAAGAGAAATGGGAGAATGAAAGTGTTTGTTTTAAAATGACAACAGAAAGTAACAAGATGCACAAACAAGATACAAAGACTAATAACACGTACTTTAGTCAGATCTCTGGTTACGAAGAAGGCCATGAAGTTCGGAATCAAAGACAGGATGGGATGGGACTTCAATTAATGGATGAAGGGCTTTCTCCGTCATGTTCTAATATGGATGTGAACTCCAGCTCTTTGCACATTCCATTTAATGGAGGAGAAAACTTGTGGGACGAGAGAGACTCCTATGTAACCAATTCACTACGTAACAAGCGTTTATTGCACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

570

Amino Acids

65.4

Weight (kDa)

6.29

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 179, 1631
AccI GTMKAC 1 cut(s) 643
AccII CGCG 1 cut(s) 1130
AciI CCGC 5 cut(s) 28, 116, 125, 1058, 1128
AcoI YGGCCR 2 cut(s) 341, 1059
AcsI RAATTY 1 cut(s) 773
AcuI CTGAAG 2 cut(s) 1295, 1337
AcyI GRCGYC 1 cut(s) 1125
AfaI GTAC 4 cut(s) 518, 619, 1080, 1484
AfiI CCNNNNNNNGG 2 cut(s) 179, 1631
AflII CTTAAG 1 cut(s) 866
AflIII ACRYGT 1 cut(s) 1479
AgeI ACCGGT 1 cut(s) 895
AgsI TTSAA 6 cut(s) 400, 590, 1004, 1115, 1300, 1556
AhlI ACTAGT 1 cut(s) 206
AjnI CCWGG 1 cut(s) 966
AjuI GAANNNNNNNTTGG 2 cut(s) 1268, 1300
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 5 cut(s) 398, 442, 1116, 1133, 1653
Alw44I GTGCAC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 1119
AoxI GGCC 4 cut(s) 39, 341, 1059, 1513
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 7 cut(s) 31, 251, 260, 263, 266, 738, 1346
ApoI RAATTY 1 cut(s) 773
AseI ATTAAT 1 cut(s) 1559
AsiGI ACCGGT 1 cut(s) 895
AspS9I GGNCC 2 cut(s) 14, 419
AsuHPI GGTGA 2 cut(s) 599, 780
AvaI CYCGRG 1 cut(s) 1119
AvaII GGWCC 2 cut(s) 14, 419
BaeGI GKGCMC 1 cut(s) 96
BalI TGGCCA 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 1283
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 7 cut(s) 43, 238, 247, 250, 253, 725, 1333
BciT130I CCWGG 1 cut(s) 968
BclI TGATCA 3 cut(s) 213, 778, 1216
BcoDI GTCTC 5 cut(s) 398, 442, 1116, 1133, 1653
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 5 cut(s) 207, 441, 1008, 1236, 1281
BfmI CTRYAG 1 cut(s) 568
BfrI CTTAAG 1 cut(s) 866
BglII AGATCT 3 cut(s) 22, 377, 1494
BlpI GCTNAGC 1 cut(s) 155
BmcAI AGTACT 1 cut(s) 518
Bme1390I CCNGG 1 cut(s) 968
Bme18I GGWCC 2 cut(s) 14, 419
BmeT110I CYCGRG 1 cut(s) 1119
BmgT120I GGNCC 2 cut(s) 14, 419
BmiI GGNNCC 1 cut(s) 863
BmrFI CCNGG 1 cut(s) 968
BmrI ACTGGG 2 cut(s) 46, 555
BmsI GCATC 1 cut(s) 1440
BmuI ACTGGG 2 cut(s) 46, 555
BpiI GAAGAC 1 cut(s) 1283
BplI GAGNNNNNCTC 2 cut(s) 1646, 1678
BpmI CTGGAG 1 cut(s) 1591
Bpu10I CCTNAGC 2 cut(s) 453, 1029
Bpu1102I GCTNAGC 1 cut(s) 155
BpuEI CTTGAG 2 cut(s) 28, 389
BsaAI YACGTR 2 cut(s) 1482, 1685
BsaBI GATNNNNATC 1 cut(s) 699
BsaHI GRCGYC 1 cut(s) 1125
BsaJI CCNNGG 3 cut(s) 344, 531, 966
BsaWI WCCGGW 1 cut(s) 895
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 1631
Bse118I RCCGGY 1 cut(s) 895
Bse1I ACTGG 3 cut(s) 52, 550, 1709
Bse8I GATNNNNATC 1 cut(s) 699
BseBI CCWGG 1 cut(s) 968
BseDI CCNNGG 3 cut(s) 344, 531, 966
BseGI GGATG 9 cut(s) 10, 232, 302, 436, 1195, 1546, 1551, 1570, 1603
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 2 cut(s) 179, 1631
BseMII CTCAG 1 cut(s) 444
BseNI ACTGG 3 cut(s) 52, 550, 1709
BseRI GAGGAG 4 cut(s) 1337, 1352, 1398, 1650
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 7 cut(s) 43, 238, 247, 250, 253, 725, 1333
BsgI GTGCAG 1 cut(s) 1032
Bsh1236I CGCG 1 cut(s) 1130
BshFI GGCC 4 cut(s) 41, 343, 1061, 1515
BshTI ACCGGT 1 cut(s) 895
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 1119
BsiSI CCGG 1 cut(s) 896
BslFI GGGAC 2 cut(s) 1563, 1664
BslI CCNNNNNNNGG 2 cut(s) 179, 1631
BsmAI GTCTC 5 cut(s) 398, 442, 1116, 1133, 1653
BsmBI CGTCTC 1 cut(s) 1116
BsmFI GGGAC 2 cut(s) 1563, 1664
BsnI GGCC 4 cut(s) 41, 343, 1061, 1515
BsoBI CYCGRG 1 cut(s) 1119
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 1078
Bsp143I GATC 7 cut(s) 22, 213, 377, 694, 778, 1216, 1494
Bsp1720I GCTNAGC 1 cut(s) 155
BspACI CCGC 5 cut(s) 28, 116, 125, 1058, 1128
BspANI GGCC 4 cut(s) 41, 343, 1061, 1515
BspCNI CTCAG 1 cut(s) 445
BspFNI CGCG 1 cut(s) 1130
BspLI GGNNCC 1 cut(s) 863
BspTI CTTAAG 1 cut(s) 866
BsrFI RCCGGY 1 cut(s) 895
BsrGI TGTACA 1 cut(s) 1078
BsrI ACTGG 3 cut(s) 52, 550, 1709
BssAI RCCGGY 1 cut(s) 895
BssECI CCNNGG 3 cut(s) 344, 531, 966
BssMI GATC 7 cut(s) 22, 213, 377, 694, 778, 1216, 1494
BssNI GRCGYC 1 cut(s) 1125
BssT1I CCWWGG 2 cut(s) 344, 531
Bst2UI CCWGG 1 cut(s) 968
Bst4CI ACNGT 4 cut(s) 641, 683, 1181, 1223
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 1125
BstAFI CTTAAG 1 cut(s) 866
BstAUI TGTACA 1 cut(s) 1078
BstBAI YACGTR 2 cut(s) 1482, 1685
BstC8I GCNNGC 2 cut(s) 181, 185
BstDEI CTNAG 5 cut(s) 155, 453, 749, 1029, 1145
BstF5I GGATG 9 cut(s) 10, 232, 302, 436, 1195, 1546, 1551, 1570, 1603
BstFNI CGCG 1 cut(s) 1130
BstKTI GATC 7 cut(s) 25, 216, 380, 697, 781, 1219, 1497
BstMAI GTCTC 5 cut(s) 398, 442, 1116, 1133, 1653
BstMBI GATC 7 cut(s) 22, 213, 377, 694, 778, 1216, 1494
BstMWI GCNNNNNNNGC 7 cut(s) 115, 124, 257, 260, 266, 744, 1699
BstNI CCWGG 1 cut(s) 968
BstSCI CCNGG 1 cut(s) 966
BstSFI CTRYAG 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 96
BstSNI TACGTA 1 cut(s) 1685
BstUI CGCG 1 cut(s) 1130
BstV1I GCAGC 7 cut(s) 43, 238, 247, 250, 253, 725, 1333
BstV2I GAAGAC 1 cut(s) 1283
BstX2I RGATCY 3 cut(s) 22, 377, 1494
BstYI RGATCY 3 cut(s) 22, 377, 1494
BsuRI GGCC 4 cut(s) 41, 343, 1061, 1515
BtsCI GGATG 9 cut(s) 10, 232, 302, 436, 1195, 1546, 1551, 1570, 1603
BtsI GCAGTG 2 cut(s) 166, 1219
BtsIMutI CAGTG 5 cut(s) 96, 166, 1186, 1219, 1702
Cac8I GCNNGC 2 cut(s) 181, 185
Cfr10I RCCGGY 1 cut(s) 895
Cfr13I GGNCC 2 cut(s) 14, 419
CseI GACGC 1 cut(s) 1133
Csp6I GTAC 4 cut(s) 517, 618, 1079, 1483
CspAI ACCGGT 1 cut(s) 895
CspCI CAANNNNNGTGG 4 cut(s) 906, 941, 1162, 1197
CviAII CATG 6 cut(s) 293, 461, 1082, 1107, 1517, 1584
CviQI GTAC 4 cut(s) 517, 618, 1079, 1483
DdeI CTNAG 5 cut(s) 155, 453, 749, 1029, 1145
DpnI GATC 7 cut(s) 24, 215, 379, 696, 780, 1218, 1496
DpnII GATC 7 cut(s) 22, 213, 377, 694, 778, 1216, 1494
DraI TTTAAA 1 cut(s) 1426
EaeI YGGCCR 2 cut(s) 341, 1059
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
EciI GGCGGA 1 cut(s) 114
Eco105I TACGTA 1 cut(s) 1685
Eco130I CCWWGG 2 cut(s) 344, 531
Eco47I GGWCC 2 cut(s) 14, 419
Eco57I CTGAAG 2 cut(s) 1295, 1337
Eco88I CYCGRG 1 cut(s) 1119
EcoO109I RGGNCCY 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 966
EcoT14I CCWWGG 2 cut(s) 344, 531
ErhI CCWWGG 2 cut(s) 344, 531
Esp3I CGTCTC 1 cut(s) 1116
FaeI CATG 6 cut(s) 296, 464, 1085, 1110, 1520, 1587
FalI AAGNNNNNCTT 4 cut(s) 342, 374, 1268, 1300
FaqI GGGAC 2 cut(s) 1563, 1664
FatI CATG 6 cut(s) 292, 460, 1081, 1106, 1516, 1583
FbaI TGATCA 3 cut(s) 213, 778, 1216
FblI GTMKAC 1 cut(s) 643
FokI GGATG 9 cut(s) 17, 219, 309, 443, 1202, 1553, 1558, 1577, 1610
FspBI CTAG 5 cut(s) 207, 441, 1008, 1236, 1281
GsuI CTGGAG 1 cut(s) 1591
HaeIII GGCC 4 cut(s) 41, 343, 1061, 1515
HapII CCGG 1 cut(s) 896
HgaI GACGC 1 cut(s) 1133
Hin1I GRCGYC 1 cut(s) 1125
Hin1II CATG 6 cut(s) 296, 464, 1085, 1110, 1520, 1587
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HinfI GANTC 7 cut(s) 389, 465, 815, 847, 1141, 1528, 1661
HpaII CCGG 1 cut(s) 896
HphI GGTGA 2 cut(s) 599, 780
Hpy166II GTNNAC 6 cut(s) 94, 637, 644, 855, 928, 1603
Hpy188I TCNGA 6 cut(s) 414, 675, 843, 1317, 1494, 1527
Hpy188III TCNNGA 8 cut(s) 20, 45, 217, 368, 386, 469, 704, 1121
Hpy8I GTNNAC 6 cut(s) 94, 637, 644, 855, 928, 1603
Hpy99I CGWCG 2 cut(s) 809, 812
HpyAV CCTTC 5 cut(s) 374, 530, 1312, 1505, 1562
HpyCH4III ACNGT 4 cut(s) 641, 683, 1181, 1223
HpyCH4IV ACGT 2 cut(s) 1481, 1684
HpyF10VI GCNNNNNNNGC 7 cut(s) 115, 124, 257, 260, 266, 744, 1699
HpyF3I CTNAG 5 cut(s) 155, 453, 749, 1029, 1145
HpySE526I ACGT 2 cut(s) 1481, 1684
Hsp92I GRCGYC 1 cut(s) 1125
Hsp92II CATG 6 cut(s) 296, 464, 1085, 1110, 1520, 1587
Ksp22I TGATCA 3 cut(s) 213, 778, 1216
Kzo9I GATC 7 cut(s) 22, 213, 377, 694, 778, 1216, 1494
LmnI GCTCC 2 cut(s) 314, 861
Lsp1109I GCAGC 7 cut(s) 43, 238, 247, 250, 253, 725, 1333
LweI GCATC 1 cut(s) 1440
MaeI CTAG 5 cut(s) 207, 441, 1008, 1236, 1281
MaeII ACGT 2 cut(s) 1481, 1684
MaeIII GTNAC 6 cut(s) 662, 677, 1442, 1502, 1669, 1685
MalI GATC 7 cut(s) 24, 215, 379, 696, 780, 1218, 1496
MboI GATC 7 cut(s) 22, 213, 377, 694, 778, 1216, 1494
MboII GAAGA 9 cut(s) 493, 647, 889, 916, 997, 1046, 1049, 1288, 1520
MflI RGATCY 3 cut(s) 22, 377, 1494
MhlI GDGCHC 1 cut(s) 96
MlsI TGGCCA 1 cut(s) 343
MluCI AATT 8 cut(s) 71, 83, 594, 773, 1206, 1228, 1556, 1675
MluNI TGGCCA 1 cut(s) 343
MlyI GAGTC 2 cut(s) 1135, 1655
Mox20I TGGCCA 1 cut(s) 343
MscI TGGCCA 1 cut(s) 343
MseI TTAA 6 cut(s) 687, 867, 1265, 1425, 1559, 1629
Msp20I TGGCCA 1 cut(s) 343
MspA1I CMGCKG 3 cut(s) 34, 251, 1273
MspCI CTTAAG 1 cut(s) 866
MspI CCGG 1 cut(s) 896
MspR9I CCNGG 1 cut(s) 968
MvaI CCWGG 1 cut(s) 968
MvnI CGCG 1 cut(s) 1130
MwoI GCNNNNNNNGC 7 cut(s) 115, 124, 257, 260, 266, 744, 1699
NdeII GATC 7 cut(s) 22, 213, 377, 694, 778, 1216, 1494
NlaIII CATG 6 cut(s) 296, 464, 1085, 1110, 1520, 1587
NlaIV GGNNCC 1 cut(s) 863
NmuCI GTSAC 1 cut(s) 662
PaeR7I CTCGAG 1 cut(s) 1119
PcsI WCGNNNNNNNCGW 1 cut(s) 1690
PfeI GAWTC 5 cut(s) 389, 465, 815, 847, 1528
PflMI CCANNNNNTGG 2 cut(s) 179, 1631
PinAI ACCGGT 1 cut(s) 895
PleI GAGTC 2 cut(s) 1135, 1655
PpsI GAGTC 2 cut(s) 1135, 1655
Ppu21I YACGTR 2 cut(s) 1482, 1685
PpuMI RGGWCCY 1 cut(s) 419
PshBI ATTAAT 1 cut(s) 1559
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 966
PspGI CCWGG 1 cut(s) 966
PspN4I GGNNCC 1 cut(s) 863
PspPI GGNCC 2 cut(s) 14, 419
PspPPI RGGWCCY 1 cut(s) 419
PsuI RGATCY 3 cut(s) 22, 377, 1494
PvuII CAGCTG 3 cut(s) 34, 251, 1273
RsaI GTAC 4 cut(s) 518, 619, 1080, 1484
RsaNI GTAC 4 cut(s) 517, 618, 1079, 1483
SaqAI TTAA 6 cut(s) 687, 867, 1265, 1425, 1559, 1629
Sau3AI GATC 7 cut(s) 22, 213, 377, 694, 778, 1216, 1494
Sau96I GGNCC 2 cut(s) 14, 419
ScaI AGTACT 1 cut(s) 518
SchI GAGTC 2 cut(s) 1135, 1655
ScrFI CCNGG 1 cut(s) 968
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 1440
SfcI CTRYAG 1 cut(s) 568
Sfr274I CTCGAG 1 cut(s) 1119
SinI GGWCC 2 cut(s) 14, 419
SlaI CTCGAG 1 cut(s) 1119
SmlI CTYRAG 4 cut(s) 43, 368, 866, 1119
SmoI CTYRAG 4 cut(s) 43, 368, 866, 1119
SnaBI TACGTA 1 cut(s) 1685
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 8 cut(s) 71, 83, 594, 773, 1206, 1228, 1556, 1675
SsiI CCGC 5 cut(s) 28, 116, 125, 1058, 1128
SspI AATATT 1 cut(s) 307
SspMI CTAG 5 cut(s) 207, 441, 1008, 1236, 1281
StyD4I CCNGG 1 cut(s) 966
StyI CCWWGG 2 cut(s) 344, 531
TaaI ACNGT 4 cut(s) 641, 683, 1181, 1223
TaiI ACGT 2 cut(s) 1484, 1687
TaqI TCGA 1 cut(s) 1120
TasI AATT 8 cut(s) 71, 83, 594, 773, 1206, 1228, 1556, 1675
TatI WGTACW 2 cut(s) 516, 1078
TauI GCSGC 3 cut(s) 31, 1061, 1130
TfiI GAWTC 5 cut(s) 389, 465, 815, 847, 1528
Tru1I TTAA 6 cut(s) 687, 867, 1265, 1425, 1559, 1629
Tru9I TTAA 6 cut(s) 687, 867, 1265, 1425, 1559, 1629
TscAI CASTG 5 cut(s) 96, 166, 1186, 1219, 1709
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 7 cut(s) 31, 251, 260, 263, 266, 738, 1346
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 9 cut(s) 47, 234, 447, 721, 860, 950, 1425, 1533, 1581
TspGWI ACGGA 2 cut(s) 622, 1569
TspRI CASTG 5 cut(s) 96, 166, 1186, 1219, 1709
Van91I CCANNNNNTGG 2 cut(s) 179, 1631
Vha464I CTTAAG 1 cut(s) 866
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 14, 419
VspI ATTAAT 1 cut(s) 1559
XapI RAATTY 1 cut(s) 773
XhoI CTCGAG 1 cut(s) 1119
XmiI GTMKAC 1 cut(s) 643
XspI CTAG 5 cut(s) 207, 441, 1008, 1236, 1281
ZrmI AGTACT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.