Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002927

Physical Location & Seq

Genomic Coordinates Reverse (-)

11801083 .. 11804531

Gene Structure 3449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17990.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGATCATGTGTGAGGAACATGGGTATCAAAGAAGCGGAAAAAAATGCAGGGAAAAATTCGAAAACTTGTACAAGTATTACAAGAAGACAAAGGAAGGAAAGGCCGGAAGACAAGATGGCAAGCACTACAGATTCTTTCGGCAGCTTGAAGCTCTCTATGGCGAAACTAGCAACAACATTGCCGCCTCATCACTCCCGCCAGATCAATCCCATTTCGTCGGTAATAATAATATCAATAACAACAACAATAATAATAGTTTTCGTTATCAAGCTCAACCGAGTCATCAAGATACTACTACTGCTGCTACATATCAGTCCACTCAGAGCGTCTCGAACTCCTCCGATTTCAAGGACTCCTCTTCCTCGGAGGACAACGGCGCCAGTGCCATTGCTCCGATAGACGATGACGTGCTTGAGATGAAGAGAATGAGGAAGAGGAGGGGATGGAAGGTGAAGATAAAGGAGTTTATCGACGTGCAAATGAGGAAGATGATGGAGAAGCAAGACGAATGGTTGGAGAAGCTGACGAGCACGCTTGAGCAGAAAGAAAGGGAGAGGGTGTTGAGAGAGGAGGAGTGGCGAAAACAAGAGGCGGGCCGGGCGGAGAGAGAGCAGCAGTTTTGGGCTAAAGAGAGGGCATGGATTGAATCAAGGGATAAAGCTCTCATGGATGCATTGCAGAAACTAACAGGAAGTAGTACTAGCCATGAAGTAAAGACTTCTTCTTCAACACCAGAGCAAGATCACGAGGACATTGTGAGTGAGCAACGGACATGGCCGGAATGCGAGATTAACAGATTGGTTCAGCTGAGAGGAAGCATGGAGTCGAGGTTTAGTACTAATCAGAGAGGTGGGTGTTCAGATGAAATTCTTTGGGAGGAGATAGCGTCCAAGATGAGTTGTTTGGGGTACGAAAGGAGTGGAATGGTGTGCAAGGAGAAATGGGAGAGCATAAACTATGGGAGCAAGTGTTCCAAGGAGTTGTTCAGTAAGAAGCGGAAGGAAAACAATCTTTCAAGACCAACTTCTTGTTACTTTGGGAATAATGAGTCTAATTCCTCAATGTACAACAGTCAAGGAGGAGTCTATGCTACTTGTGAAATGAACAATCATGAACGTGTTGATGATGGTTCTCCTCCTGCTAATCCAAATGTAGGCAATGCTGCAGTGGTGAACGAGACTTGTTTTCCATTTTTGATGGGTGAAGGAGACAACTTGTGGGAGAACTATGGTTTGAAGCTCAGCAAGGGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009909 GO:0010016 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045926 GO:0046620 GO:0046621 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048441 GO:0048442 GO:0048444 GO:0048446 GO:0048464 GO:0048465 GO:0048498 GO:0048519 GO:0048559 GO:0048560 GO:0048580 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090428 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090707 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

419

Amino Acids

48.11

Weight (kDa)

6.46

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	127 - 213	2e-21	Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4	PF13837	418 - 494	2.9e-12	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10000 AT3G10000 AT5G03680
fragaria_vesca	FvH4_6g17990 FvH4_6g17990 FvH4_7g05970
malus_domestica	MD02G1247700.v1.1 MD07G1068800.v1.1 MD12G1018900.v1.1 MD14G1016900.v1.1
prunus_persica	Prupe.2G086500_v2.0.a1 Prupe.7G116400_v2.0.a1
pyrus_communis	pycom02g21160 pycom07g05290 pycom12g01570 pycom14g01450
rosa_chinensis	RchiOBHm_Chr1g0333231 RchiOBHm_Chr3g0472271
rosa_laevigata	RLG00000024094 RLG00000029619
rosa_multiflora	Rmu_sc0001214.1_g000051 Rmu_sc0008192.1_g000003
rosa_roxburghii	Rroxscaffold_4G00317680 Rroxscaffold_6G00409120
rosa_rugosa	Rorug01G0108100 Rorug03G0123400
rosa_samantha	Rh1AG131100 Rh1BG100500 Rh1CG125000 Rh1DG136500 Rh3AG175700 Rh3BG201200 Rh3CG192500 Rh3CG199600 Rh3CG199700 Rh3DG173800
rosa_wichuraiana	Rw1G010840 Rw3G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AciI	CCGC	6 cut(s)	36, 183, 197, 593, 602, 997
AcoI	YGGCCR	1 cut(s)	776
AcsI	RAATTY	2 cut(s)	56, 867
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	5 cut(s)	71, 700, 838, 911, 1067
AfiI	CCNNNNNNNGG	1 cut(s)	1154
AflIII	ACRYGT	1 cut(s)	1117
AgsI	TTSAA	6 cut(s)	149, 349, 647, 729, 1017, 1237
AjiI	CACGTC	2 cut(s)	409, 475
AjuI	GAANNNNNNNTTGG	2 cut(s)	968, 1000
AloI	GAACNNNNNNTCC	2 cut(s)	955, 987
AluBI	AGCT	7 cut(s)	145, 152, 272, 523, 662, 808, 1240
AluI	AGCT	7 cut(s)	145, 152, 272, 523, 662, 808, 1240
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	3 cut(s)	334, 1172, 1203
AoxI	GGCC	3 cut(s)	102, 595, 776
ApeKI	GCWGC	4 cut(s)	142, 302, 613, 1163
ApoI	RAATTY	2 cut(s)	56, 867
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	595
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	463, 1183, 1214
AsuII	TTCGAA	1 cut(s)	60
BaeI	ACNNNNGTAYC	2 cut(s)	8, 41
BanI	GGYRCC	1 cut(s)	377
BauI	CACGAG	1 cut(s)	746
BbsI	GAAGAC	2 cut(s)	92, 115
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	4 cut(s)	154, 289, 625, 1150
BccI	CCATC	5 cut(s)	110, 438, 487, 1121, 1192
BceAI	ACGGC	1 cut(s)	391
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	3 cut(s)	334, 1172, 1203
BfaI	CTAG	2 cut(s)	168, 702
BfmI	CTRYAG	2 cut(s)	127, 1164
BfoI	RGCGCY	1 cut(s)	381
BisI	GCNGC	5 cut(s)	143, 183, 303, 614, 1164
BlpI	GCTNAGC	1 cut(s)	1241
BlsI	GCNGC	5 cut(s)	144, 184, 304, 615, 1165
BmcAI	AGTACT	2 cut(s)	700, 838
Bme1390I	CCNGG	1 cut(s)	599
BmgBI	CACGTC	2 cut(s)	409, 475
BmgT120I	GGNCC	1 cut(s)	595
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	1 cut(s)	661
BpiI	GAAGAC	2 cut(s)	92, 115
Bpu1102I	GCTNAGC	1 cut(s)	1241
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	434, 557
BpuMI	CCSGG	1 cut(s)	599
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	363, 975
BsaXI	ACNNNNNCTCC	8 cut(s)	545, 575, 815, 845, 872, 902, 955, 985
Bsc4I	CCNNNNNNNGG	1 cut(s)	1154
Bse1I	ACTGG	1 cut(s)	381
Bse3DI	GCAATG	4 cut(s)	177, 387, 674, 1165
BseDI	CCNNGG	2 cut(s)	363, 975
BseGI	GGATG	2 cut(s)	449, 676
BseLI	CCNNNNNNNGG	1 cut(s)	1154
BseMI	GCAATG	4 cut(s)	177, 387, 674, 1165
BseMII	CTCAG	3 cut(s)	335, 800, 1255
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	8 cut(s)	328, 346, 451, 584, 587, 893, 1095, 1125
BseXI	GCAGC	4 cut(s)	154, 289, 625, 1150
BshFI	GGCC	3 cut(s)	104, 597, 778
BshNI	GGYRCC	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	533
BsiSI	CCGG	3 cut(s)	105, 598, 779
BslI	CCNNNNNNNGG	1 cut(s)	1154
BsmAI	GTCTC	3 cut(s)	334, 1172, 1203
BsmBI	CGTCTC	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	788
BsnI	GGCC	3 cut(s)	104, 597, 778
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp1407I	TGTACA	2 cut(s)	69, 1065
Bsp143I	GATC	3 cut(s)	3, 202, 742
Bsp1720I	GCTNAGC	1 cut(s)	1241
BspACI	CCGC	6 cut(s)	36, 183, 197, 593, 602, 997
BspANI	GGCC	3 cut(s)	104, 597, 778
BspCNI	CTCAG	3 cut(s)	334, 801, 1254
BspHI	TCATGA	1 cut(s)	1111
BspLI	GGNNCC	1 cut(s)	379
BspMAI	CTGCAG	1 cut(s)	1168
BspT104I	TTCGAA	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	377
BsrDI	GCAATG	4 cut(s)	177, 387, 674, 1165
BsrGI	TGTACA	2 cut(s)	69, 1065
BsrI	ACTGG	1 cut(s)	381
BssECI	CCNNGG	2 cut(s)	363, 975
BssMI	GATC	3 cut(s)	3, 202, 742
BssNI	GRCGYC	1 cut(s)	378
BssSI	CACGAG	1 cut(s)	746
BssT1I	CCWWGG	1 cut(s)	975
Bst2BI	CACGAG	1 cut(s)	746
Bst4CI	ACNGT	1 cut(s)	1073
Bst6I	CTCTTC	3 cut(s)	364, 416, 428
BstACI	GRCGYC	1 cut(s)	378
BstAUI	TGTACA	2 cut(s)	69, 1065
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	122, 533, 595
BstDEI	CTNAG	3 cut(s)	321, 809, 1241
BstF5I	GGATG	2 cut(s)	449, 676
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	3 cut(s)	6, 205, 745
BstMAI	GTCTC	3 cut(s)	334, 1172, 1203
BstMBI	GATC	3 cut(s)	3, 202, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 599
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	2 cut(s)	127, 1164
BstV1I	GCAGC	4 cut(s)	154, 289, 625, 1150
BstV2I	GAAGAC	2 cut(s)	92, 115
BsuRI	GGCC	3 cut(s)	104, 597, 778
BtrI	CACGTC	2 cut(s)	409, 475
BtsCI	GGATG	2 cut(s)	449, 676
BtsI	GCAGTG	1 cut(s)	1173
BtsIMutI	CAGTG	2 cut(s)	388, 1173
Cac8I	GCNNGC	3 cut(s)	122, 533, 595
CciI	TCATGA	1 cut(s)	1111
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	595
CseI	GACGC	2 cut(s)	316, 876
Csp6I	GTAC	5 cut(s)	70, 699, 837, 910, 1066
CviAII	CATG	8 cut(s)	7, 20, 639, 667, 707, 774, 820, 1112
CviQI	GTAC	5 cut(s)	70, 699, 837, 910, 1066
DdeI	CTNAG	3 cut(s)	321, 809, 1241
DinI	GGCGCC	1 cut(s)	379
DpnI	GATC	3 cut(s)	5, 204, 744
DpnII	GATC	3 cut(s)	3, 202, 742
EaeI	YGGCCR	1 cut(s)	776
Eam1104I	CTCTTC	3 cut(s)	364, 416, 428
EarI	CTCTTC	3 cut(s)	364, 416, 428
EciI	GGCGGA	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	975
EcoT14I	CCWWGG	1 cut(s)	975
EcoT22I	ATGCAT	1 cut(s)	676
EgeI	GGCGCC	1 cut(s)	379
EheI	GGCGCC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	975
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	8 cut(s)	10, 23, 642, 670, 710, 777, 823, 1115
FalI	AAGNNNNNCTT	2 cut(s)	1009, 1041
FatI	CATG	8 cut(s)	6, 19, 638, 666, 706, 773, 819, 1111
FauI	CCCGC	2 cut(s)	204, 586
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	5 cut(s)	143, 183, 303, 614, 1164
FokI	GGATG	2 cut(s)	456, 683
Fsp4HI	GCNGC	5 cut(s)	143, 183, 303, 614, 1164
FspBI	CTAG	2 cut(s)	168, 702
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	5 cut(s)	143, 183, 303, 614, 1164
HaeII	RGCGCY	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	104, 597, 778
HapII	CCGG	3 cut(s)	105, 598, 779
HgaI	GACGC	2 cut(s)	316, 876
HhaI	GCGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	8 cut(s)	10, 23, 642, 670, 710, 777, 823, 1115
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HinfI	GANTC	7 cut(s)	132, 280, 353, 647, 824, 1049, 1083
HpaII	CCGG	3 cut(s)	105, 598, 779
HphI	GGTGA	3 cut(s)	463, 1183, 1214
Hpy166II	GTNNAC	2 cut(s)	318, 1174
Hpy188I	TCNGA	6 cut(s)	324, 343, 367, 396, 846, 862
Hpy188III	TCNNGA	5 cut(s)	287, 331, 746, 1017, 1112
Hpy8I	GTNNAC	2 cut(s)	318, 1174
Hpy99I	CGWCG	2 cut(s)	221, 476
HpyAV	CCTTC	4 cut(s)	89, 442, 994, 1199
HpyCH4III	ACNGT	1 cut(s)	1073
HpyCH4IV	ACGT	3 cut(s)	408, 474, 1117
HpyCH4V	TGCA	6 cut(s)	48, 478, 674, 679, 933, 1166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 599
HpyF3I	CTNAG	3 cut(s)	321, 809, 1241
HpySE526I	ACGT	3 cut(s)	408, 474, 1117
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	8 cut(s)	10, 23, 642, 670, 710, 777, 823, 1115
HspAI	GCGC	1 cut(s)	378
KasI	GGCGCC	1 cut(s)	377
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 202, 742
LmnI	GCTCC	2 cut(s)	397, 963
LpnPI	CCDG	9 cut(s)	34, 118, 213, 394, 611, 675, 747, 792, 1152
Lsp1109I	GCAGC	4 cut(s)	154, 289, 625, 1150
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	2 cut(s)	168, 702
MaeII	ACGT	3 cut(s)	408, 474, 1117
MaeIII	GTNAC	1 cut(s)	1031
MalI	GATC	3 cut(s)	5, 204, 744
MboI	GATC	3 cut(s)	3, 202, 742
MboII	GAAGA	9 cut(s)	97, 120, 351, 433, 445, 466, 499, 714, 717
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	3 cut(s)	56, 867, 1054
Mly113I	GGCGCC	1 cut(s)	378
MlyI	GAGTC	5 cut(s)	289, 347, 833, 1058, 1092
MmeI	TCCRAC	1 cut(s)	495
Mph1103I	ATGCAT	1 cut(s)	676
MseI	TTAA	2 cut(s)	792, 1255
MslI	CAYNNNNRTG	1 cut(s)	1116
MspA1I	CMGCKG	1 cut(s)	808
MspI	CCGG	3 cut(s)	105, 598, 779
MspR9I	CCNGG	1 cut(s)	599
Mva1269I	GAATGC	1 cut(s)	788
MwoI	GCNNNNNNNGC	2 cut(s)	168, 599
NarI	GGCGCC	1 cut(s)	378
NciI	CCSGG	1 cut(s)	599
NdeII	GATC	3 cut(s)	3, 202, 742
NlaIII	CATG	8 cut(s)	10, 23, 642, 670, 710, 777, 823, 1115
NlaIV	GGNNCC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	676
NspV	TTCGAA	1 cut(s)	60
PagI	TCATGA	1 cut(s)	1111
PctI	GAATGC	1 cut(s)	788
PfeI	GAWTC	2 cut(s)	132, 647
PkrI	GCNGC	5 cut(s)	144, 184, 304, 615, 1165
PleI	GAGTC	5 cut(s)	288, 347, 832, 1057, 1091
PluTI	GGCGCC	1 cut(s)	381
PpsI	GAGTC	5 cut(s)	288, 347, 832, 1057, 1091
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	595
PstI	CTGCAG	1 cut(s)	1168
PvuII	CAGCTG	1 cut(s)	808
RsaI	GTAC	5 cut(s)	71, 700, 838, 911, 1067
RsaNI	GTAC	5 cut(s)	70, 699, 837, 910, 1066
RseI	CAYNNNNRTG	1 cut(s)	1116
SaqAI	TTAA	2 cut(s)	792, 1255
SatI	GCNGC	5 cut(s)	143, 183, 303, 614, 1164
Sau3AI	GATC	3 cut(s)	3, 202, 742
Sau96I	GGNCC	1 cut(s)	595
ScaI	AGTACT	2 cut(s)	700, 838
SchI	GAGTC	5 cut(s)	289, 347, 833, 1058, 1092
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	2 cut(s)	127, 1164
SfoI	GGCGCC	1 cut(s)	379
SfuI	TTCGAA	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	1116
SmlI	CTYRAG	2 cut(s)	413, 536
SmoI	CTYRAG	2 cut(s)	413, 536
Sse9I	AATT	3 cut(s)	56, 867, 1054
SsiI	CCGC	6 cut(s)	36, 183, 197, 593, 602, 997
SspDI	GGCGCC	1 cut(s)	377
SspMI	CTAG	2 cut(s)	168, 702
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	975
TaaI	ACNGT	1 cut(s)	1073
TaiI	ACGT	3 cut(s)	411, 477, 1120
TaqI	TCGA	4 cut(s)	60, 332, 471, 827
TasI	AATT	3 cut(s)	56, 867, 1054
TatI	WGTACW	4 cut(s)	69, 698, 836, 1065
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	132, 647
Tru1I	TTAA	2 cut(s)	792, 1255
Tru9I	TTAA	2 cut(s)	792, 1255
TscAI	CASTG	2 cut(s)	388, 1173
TseI	GCWGC	4 cut(s)	142, 302, 613, 1163
TspDTI	ATGAA	5 cut(s)	434, 723, 879, 1118, 1128
TspGWI	ACGGA	1 cut(s)	784
TspRI	CASTG	2 cut(s)	388, 1173
XapI	RAATTY	2 cut(s)	56, 867
XspI	CTAG	2 cut(s)	168, 702
ZrmI	AGTACT	2 cut(s)	700, 838
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.