Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002927

Physical Location & Seq

Genomic Coordinates Reverse (-)

1051148 .. 1053356

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTTCGATCTCCGGCAACTCATGAACGGAGGTCGGACTCACTTCCCCACCATCCCACTACAATCCCCCACCGAGCTCTTCCCGAACCACCACCGAGAACCTCCTCCTACTCTTCATCATCAACACCATCCGTACGAGCAGCTCATGATGATGGGCCGTTCTCAAACCCACGAGATGATCTCTCGTGGGCTTCACCATCATCATGAGTTTCGCTCTCCGGACTCTACTAGTGCTGCCGGAGGTGTCACTACTCCTACTACTGTTACAGCAGCTCCTTCCCTTAGTGGCGGTGGCTTGGAGACTGAAGCTGGCGGGTGTCTTGGCGGCGAAGGGTCTGGAAGGTGGCCGAGGCAAGAGACTCTCACTCTTCTGGAGATCCGATCACGGCTTGATTTTAAGTTCAAAGAGGCTAATCAGAAGGGTCCTCTCTGGGATGAAGTCTCTAGGATCATGTTTGAGGAACATGGGTATCAAAGAAGTGGGAAAAAATGTAGAGAGAAGTTTGAAAATTTGTACAAGTACTACAAGAAAACAAAGGAAGGAAAGGCTGGAAGACAAGATGGCAAGCATTATCGGTTCTTTCGACAGCTCGAAGCTCTCTATGGAGAAACCACCAACGCCGTAGTCTCACCATCTTTACCTGTAGAAACCCATTTCGTCGGTAATAATAGTAGCAATTATCGTTACCAAGCAGCCGGCAATGCTCAAGCAAATCAAGAGATCACTACTCCCTATCATCATCAATCATCTGATCAAAAGCACTGCGACAGCCTTAGCCTCTCGAATTCATCCGAGTTTGAAACCTCCTCCTCAGAAGATCAAGACATTAATAATGATGTCAGTGCAGCCGCAATGGACGATGATCTGCAGGAGGTGAAGACAACGAGGAAGAGAAGAGGGGGTGGCGGGGGGAGGGGTTGGAAGGCGAAGATAAAAGAGTTTATCGATGTGCAAATGAGGAAGCTAATGGAGAAGCAAGAGGAGTGGTTGGAGAGGCTAATGAGAACCCTTGAGCAAAAGGAGAGGGAGAGAGTGGTGAGAGAGGAGGAGTGGAGAAAACAAGAAGTTGATAGGGTTGAGAGAGAGCACAAGTTTTGGGCCAAAGAGAGGGCATGGATTGAAGCTAGGGATAAAGCTTTGATGGATGCATTGCACAAGATATCGGGAGGATCGATCATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009909 GO:0010016 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045926 GO:0046620 GO:0046621 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048441 GO:0048442 GO:0048444 GO:0048446 GO:0048464 GO:0048465 GO:0048498 GO:0048519 GO:0048559 GO:0048560 GO:0048580 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090428 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090707 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

395

Amino Acids

45.32

Weight (kDa)

7.36

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	114 - 200	6.8e-21	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10000 AT3G10000 AT5G03680
fragaria_vesca	FvH4_6g17990 FvH4_6g17990 FvH4_7g05970
malus_domestica	MD02G1247700.v1.1 MD07G1068800.v1.1 MD12G1018900.v1.1 MD14G1016900.v1.1
prunus_persica	Prupe.2G086500_v2.0.a1 Prupe.7G116400_v2.0.a1
pyrus_communis	pycom02g21160 pycom07g05290 pycom12g01570 pycom14g01450
rosa_chinensis	RchiOBHm_Chr1g0333231 RchiOBHm_Chr3g0472271
rosa_laevigata	RLG00000024094 RLG00000029619
rosa_multiflora	Rmu_sc0001214.1_g000051 Rmu_sc0008192.1_g000003
rosa_roxburghii	Rroxscaffold_4G00317680 Rroxscaffold_6G00409120
rosa_rugosa	Rorug01G0108100 Rorug03G0123400
rosa_samantha	Rh1AG131100 Rh1BG100500 Rh1CG125000 Rh1DG136500 Rh3AG175700 Rh3BG201200 Rh3CG192500 Rh3CG199600 Rh3CG199700 Rh3DG173800
rosa_wichuraiana	Rw1G010840 Rw3G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	5 cut(s)	288, 312, 324, 849, 906
AclWI	GGATC	3 cut(s)	370, 455, 1177
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	508, 784
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	3 cut(s)	134, 515, 521
AfiI	CCNNNNNNNGG	1 cut(s)	1107
AgsI	TTSAA	4 cut(s)	403, 506, 800, 1121
AhlI	ACTAGT	1 cut(s)	227
AluBI	AGCT	9 cut(s)	76, 142, 272, 308, 589, 596, 964, 1124, 1136
AluI	AGCT	9 cut(s)	76, 142, 272, 308, 589, 596, 964, 1124, 1136
Alw21I	GWGCWC	2 cut(s)	78, 1089
Alw26I	GTCTC	4 cut(s)	293, 350, 445, 631
AlwI	GGATC	3 cut(s)	370, 455, 1177
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	3 cut(s)	154, 344, 1098
ApeKI	GCWGC	5 cut(s)	139, 233, 269, 692, 845
ApoI	RAATTY	2 cut(s)	508, 784
AseI	ATTAAT	1 cut(s)	828
AspS9I	GGNCC	3 cut(s)	154, 422, 1098
AsuHPI	GGTGA	4 cut(s)	185, 621, 886, 1048
AvaII	GGWCC	1 cut(s)	422
BaeI	ACNNNNGTAYC	2 cut(s)	452, 485
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	2 cut(s)	170, 183
BbsI	GAAGAC	2 cut(s)	559, 884
Bbv12I	GWGCWC	2 cut(s)	78, 1089
BbvI	GCAGC	5 cut(s)	151, 220, 281, 704, 857
BccI	CCATC	7 cut(s)	59, 135, 145, 204, 554, 640, 1135
BceAI	ACGGC	3 cut(s)	141, 401, 605
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	4 cut(s)	293, 350, 445, 631
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	3 cut(s)	228, 444, 1125
BfmI	CTRYAG	2 cut(s)	642, 866
BisI	GCNGC	7 cut(s)	140, 234, 270, 325, 693, 846, 849
BlsI	GCNGC	7 cut(s)	141, 235, 271, 326, 694, 847, 850
BmcAI	AGTACT	1 cut(s)	521
Bme18I	GGWCC	1 cut(s)	422
BmgT120I	GGNCC	3 cut(s)	154, 422, 1098
BmiI	GGNNCC	1 cut(s)	423
BmsI	GCATC	1 cut(s)	1135
BpiI	GAAGAC	2 cut(s)	559, 884
BplI	GAGNNNNNCTC	4 cut(s)	164, 196, 197, 229
BpmI	CTGGAG	1 cut(s)	392
Bpu10I	CCTNAGC	1 cut(s)	773
BpuEI	CTTGAG	2 cut(s)	690, 1031
Bsa29I	ATCGAT	2 cut(s)	945, 1172
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	1107
Bse118I	RCCGGY	1 cut(s)	695
Bse3DI	GCAATG	3 cut(s)	706, 858, 1148
BseAI	TCCGGA	1 cut(s)	217
BseCI	ATCGAT	2 cut(s)	945, 1172
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	5 cut(s)	51, 127, 439, 788, 1150
BseLI	CCNNNNNNNGG	1 cut(s)	1107
BseMI	GCAATG	3 cut(s)	706, 858, 1148
BseMII	CTCAG	1 cut(s)	825
BseRI	GAGGAG	6 cut(s)	93, 796, 799, 995, 1058, 1061
BseXI	GCAGC	5 cut(s)	151, 220, 281, 704, 857
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	3 cut(s)	156, 346, 1100
BshVI	ATCGAT	2 cut(s)	945, 1172
BsiHKAI	GWGCWC	2 cut(s)	78, 1089
BsiSI	CCGG	4 cut(s)	13, 218, 237, 696
BsiWI	CGTACG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	1107
BsmAI	GTCTC	4 cut(s)	293, 350, 445, 631
BsnI	GGCC	3 cut(s)	156, 346, 1100
Bsp1286I	GDGCHC	2 cut(s)	78, 1089
Bsp13I	TCCGGA	1 cut(s)	217
Bsp1407I	TGTACA	1 cut(s)	513
BspACI	CCGC	5 cut(s)	288, 312, 324, 849, 906
BspANI	GGCC	3 cut(s)	156, 346, 1100
BspCNI	CTCAG	1 cut(s)	824
BspDI	ATCGAT	2 cut(s)	945, 1172
BspEI	TCCGGA	1 cut(s)	217
BspHI	TCATGA	3 cut(s)	21, 144, 202
BspLI	GGNNCC	1 cut(s)	423
BspMAI	CTGCAG	1 cut(s)	870
BspPI	GGATC	3 cut(s)	370, 455, 1177
BspQI	GCTCTTC	1 cut(s)	83
BsrDI	GCAATG	3 cut(s)	706, 858, 1148
BsrFI	RCCGGY	1 cut(s)	695
BsrGI	TGTACA	1 cut(s)	513
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	1 cut(s)	347
BssSI	CACGAG	2 cut(s)	170, 183
Bst2BI	CACGAG	2 cut(s)	170, 183
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	5 cut(s)	83, 117, 372, 884, 889
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	310, 566, 697
BstDEI	CTNAG	3 cut(s)	281, 773, 811
BstF5I	GGATG	5 cut(s)	51, 127, 439, 788, 1150
BstMAI	GTCTC	4 cut(s)	293, 350, 445, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstSFI	CTRYAG	2 cut(s)	642, 866
BstV1I	GCAGC	5 cut(s)	151, 220, 281, 704, 857
BstV2I	GAAGAC	2 cut(s)	559, 884
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
Bsu15I	ATCGAT	2 cut(s)	945, 1172
BsuRI	GGCC	3 cut(s)	156, 346, 1100
BsuTUI	ATCGAT	2 cut(s)	945, 1172
BtsCI	GGATG	5 cut(s)	51, 127, 439, 788, 1150
BtsI	GCAGTG	1 cut(s)	760
BtsIMutI	CAGTG	2 cut(s)	760, 847
Cac8I	GCNNGC	3 cut(s)	310, 566, 697
CciI	TCATGA	3 cut(s)	21, 144, 202
Cfr10I	RCCGGY	1 cut(s)	695
Cfr13I	GGNCC	3 cut(s)	154, 422, 1098
ClaI	ATCGAT	2 cut(s)	945, 1172
Csp6I	GTAC	3 cut(s)	133, 514, 520
CspCI	CAANNNNNGTGG	2 cut(s)	965, 1000
CviAII	CATG	6 cut(s)	22, 145, 203, 451, 464, 1113
CviQI	GTAC	3 cut(s)	133, 514, 520
DdeI	CTNAG	3 cut(s)	281, 773, 811
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	5 cut(s)	83, 117, 372, 884, 889
EarI	CTCTTC	5 cut(s)	83, 117, 372, 884, 889
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	1161
Eco47I	GGWCC	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	784
EcoRV	GATATC	1 cut(s)	1161
EcoT22I	ATGCAT	1 cut(s)	1150
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	6 cut(s)	25, 148, 206, 454, 467, 1116
FaiI	YATR	7 cut(s)	23, 146, 204, 452, 465, 603, 1114
FatI	CATG	6 cut(s)	21, 144, 202, 450, 463, 1112
FauI	CCCGC	2 cut(s)	305, 899
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	7 cut(s)	140, 234, 270, 325, 693, 846, 849
FokI	GGATG	5 cut(s)	38, 114, 446, 775, 1157
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	7 cut(s)	140, 234, 270, 325, 693, 846, 849
FspBI	CTAG	3 cut(s)	228, 444, 1125
GluI	GCNGC	7 cut(s)	140, 234, 270, 325, 693, 846, 849
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	156, 346, 1100
HapII	CCGG	4 cut(s)	13, 218, 237, 696
Hin1II	CATG	6 cut(s)	25, 148, 206, 454, 467, 1116
HindIII	AAGCTT	1 cut(s)	1134
HinfI	GANTC	3 cut(s)	37, 221, 358
HpaII	CCGG	4 cut(s)	13, 218, 237, 696
HphI	GGTGA	4 cut(s)	185, 621, 886, 1048
Hpy188I	TCNGA	6 cut(s)	36, 380, 417, 751, 793, 814
Hpy99I	CGWCG	1 cut(s)	662
HpyAV	CCTTC	6 cut(s)	285, 323, 333, 412, 533, 916
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	5 cut(s)	845, 868, 952, 1148, 1153
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	3 cut(s)	281, 773, 811
Hsp92II	CATG	6 cut(s)	25, 148, 206, 454, 467, 1116
Kpn2I	TCCGGA	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	695
KroNI	GCCGGC	1 cut(s)	697
Ksp22I	TGATCA	1 cut(s)	751
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	5 cut(s)	151, 220, 281, 704, 857
LweI	GCATC	1 cut(s)	1135
MaeI	CTAG	3 cut(s)	228, 444, 1125
MaeIII	GTNAC	3 cut(s)	244, 262, 683
MboII	GAAGA	9 cut(s)	70, 104, 359, 564, 827, 889, 901, 906, 940
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	2 cut(s)	78, 1089
MluCI	AATT	3 cut(s)	508, 676, 784
MlyI	GAGTC	3 cut(s)	31, 215, 352
MmeI	TCCRAC	3 cut(s)	14, 899, 969
Mph1103I	ATGCAT	1 cut(s)	1150
MroI	TCCGGA	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	695
MseI	TTAA	2 cut(s)	396, 828
MslI	CAYNNNNRTG	2 cut(s)	149, 201
MspI	CCGG	4 cut(s)	13, 218, 237, 696
MwoI	GCNNNNNNNGC	1 cut(s)	701
NaeI	GCCGGC	1 cut(s)	697
NgoMIV	GCCGGC	1 cut(s)	695
NlaIII	CATG	6 cut(s)	25, 148, 206, 454, 467, 1116
NlaIV	GGNNCC	1 cut(s)	423
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	1150
PagI	TCATGA	3 cut(s)	21, 144, 202
PciSI	GCTCTTC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	2 cut(s)	580, 1169
PdiI	GCCGGC	1 cut(s)	697
Pfl23II	CGTACG	1 cut(s)	132
PkrI	GCNGC	7 cut(s)	141, 235, 271, 326, 694, 847, 850
PleI	GAGTC	3 cut(s)	31, 215, 352
PpsI	GAGTC	3 cut(s)	31, 215, 352
PpuMI	RGGWCCY	1 cut(s)	422
PshBI	ATTAAT	1 cut(s)	828
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	422
PspLI	CGTACG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	423
PspPI	GGNCC	3 cut(s)	154, 422, 1098
PspPPI	RGGWCCY	1 cut(s)	422
PstI	CTGCAG	1 cut(s)	870
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	3 cut(s)	134, 515, 521
RsaNI	GTAC	3 cut(s)	133, 514, 520
RseI	CAYNNNNRTG	2 cut(s)	149, 201
SacI	GAGCTC	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	396, 828
SatI	GCNGC	7 cut(s)	140, 234, 270, 325, 693, 846, 849
Sau96I	GGNCC	3 cut(s)	154, 422, 1098
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	3 cut(s)	31, 215, 352
SduI	GDGCHC	2 cut(s)	78, 1089
SfaNI	GCATC	1 cut(s)	1135
SfcI	CTRYAG	2 cut(s)	642, 866
SinI	GGWCC	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	149, 201
SmlI	CTYRAG	2 cut(s)	705, 1010
SmoI	CTYRAG	2 cut(s)	705, 1010
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	3 cut(s)	508, 676, 784
SsiI	CCGC	5 cut(s)	288, 312, 324, 849, 906
SspMI	CTAG	3 cut(s)	228, 444, 1125
SstI	GAGCTC	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	6 cut(s)	6, 583, 591, 782, 945, 1172
TasI	AATT	3 cut(s)	508, 676, 784
TatI	WGTACW	2 cut(s)	513, 519
TauI	GCSGC	2 cut(s)	327, 851
Tru1I	TTAA	2 cut(s)	396, 828
Tru9I	TTAA	2 cut(s)	396, 828
TscAI	CASTG	2 cut(s)	767, 847
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	5 cut(s)	139, 233, 269, 692, 845
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	38, 104, 450, 777
TspGWI	ACGGA	2 cut(s)	42, 120
TspRI	CASTG	2 cut(s)	767, 847
VpaK11BI	GGWCC	1 cut(s)	422
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	2 cut(s)	508, 784
XspI	CTAG	3 cut(s)	228, 444, 1125
ZrmI	AGTACT	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.