AT5G03680
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
957611 .. 961047
3437 bp
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UTR
Exon/CDS
Intron
AT5G03680.1

Sequence Viewer

Length: 1776 bp
ATGGATCAAGATCAGCATCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACTACTACAACACCGTCTACTTCTTCTCATTTTCCCTCTGATTTCTTCGGTTTTAACCTTGCTCCGGTGCAGCCACCGCCACACCGTCTTCATCAGTTCACTACTGATCAAGATATGGGTTTCTTGCCACGTGGCATACATGGATTGGGTGGAGGTTCTTCAACGGCTGGAAATAACAGTAACTTAAACGCGAGTACTAGTGGTGGAGGAGTTGGGTTTAGTGGGTTTCTTGACGGTGGTGGTTTCGGCAGCGGAGTAGGAGGAGACGGTGGAGGAACTGGAAGGTGGCCGAGACAAGAAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATCAAAAAGGACCTCTTTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAAGGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTGTACAAATACTATAGGAAGACTAAAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCCGGCAGCTCGAAGCGCTATACGGGGATTCTAATAACTTGGTTTCTTGTCCCAATCATAACACGCAGTTCATGAGCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAACGTTACTACAACAACGTCCAACATCCATAACGTTGATAGTGTTCATGGTTTTCATCAAAGCCTTAGTCTTTCTAACAACTACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTAGAAGGAAAAAGAGGAGTTGGAAAGCGAAGATAAAGGAGTTCATTGATACGAACATGAAAAGGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAGAGGAACAACGGATGATGAAAGAAGAGGAATGGAGGAAGATTGAAGCTGCAAGGATTGATAAAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTTGCGGTGATTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAGCCGCTGTGTTCATCCCCGGAAGAGAGGACAAATGGTAATAATGAGATCCGAAACAATAGTGAGACACAGAATGAGAATGGAAGCGATCAAACGATGACTAACAATGTTTGTGTTAAAGGAAGTAGTAGCTGCTGGGGTGAGCAAGAGATTTTAAAGCTTATGGAGATAAGAACGAGCATGGACTCGACCTTTCAAGAGATATTAGGAGGGTGCTCGGATGAGTTTCTATGGGAGGAAATCGCAGCGAAGTTGATTCAGTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGCAATGGAATGAGGAAAGAAAAGAAGCAAATCAACAAGAAAAGAAAGGATAATTCGTCCAGCTGCGGCGTGTACTACCCGAGAAACGAAGAAAATCCAATCTACAATAATCGAGAAAGTGGATATAATGATAATGATCCGCATCAAATCAACGAACAAGGCAATGTAGGTTCTTCAACATCAAACGCAAACGCAAACGCAAACGTAACCACTGGAAATCCGAGCGGTGCAATGGCTGCTAGTACAAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTTGAGGCTCAGTAAAGAAGAGAATCAGTAA

Protein Analysis

591

Amino Acids

66.64

Weight (kDa)

6.63

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 119 - 205 7.1e-22 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 420 - 504 2.1e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1668
AccI GTMKAC 2 cut(s) 31, 89
AccII CGCG 1 cut(s) 263
AciI CCGC 8 cut(s) 60, 149, 324, 1085, 1133, 1509, 1583, 1668
AclI AACGTT 2 cut(s) 711, 741
AclWI GGATC 3 cut(s) 12, 1171, 1574
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 2 cut(s) 413, 1726
AcvI CACGTG 1 cut(s) 203
AfaI GTAC 5 cut(s) 26, 268, 530, 1517, 1687
AfeI AGCGCT 1 cut(s) 612
AfiI CCNNNNNNNGG 2 cut(s) 26, 136
AgsI TTSAA 6 cut(s) 234, 418, 962, 1013, 1325, 1620
AhlI ACTAGT 1 cut(s) 269
Alw21I GWGCWC 3 cut(s) 42, 679, 1346
Alw26I GTCTC 3 cut(s) 330, 358, 1187
AlwI GGATC 3 cut(s) 12, 1171, 1574
Ama87I CYCGRG 1 cut(s) 1522
Aor51HI AGCGCT 1 cut(s) 612
AoxI GGCC 1 cut(s) 359
ApeKI GCWGC 9 cut(s) 46, 142, 321, 601, 1016, 1260, 1373, 1506, 1679
ApoI RAATTY 2 cut(s) 413, 1726
ArsI GACNNNNNNTTYG 4 cut(s) 760, 792, 808, 840
AspLEI GCGC 1 cut(s) 613
AspS9I GGNCC 1 cut(s) 437
AsuC2I CCSGG 1 cut(s) 1148
AsuHPI GGTGA 2 cut(s) 1099, 1280
AvaI CYCGRG 1 cut(s) 1522
AvaII GGWCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 42
BarI GAAGNNNNNNTAC 2 cut(s) 58, 90
BbrPI CACGTG 1 cut(s) 203
BbsI GAAGAC 4 cut(s) 152, 551, 574, 969
Bbv12I GWGCWC 3 cut(s) 42, 679, 1346
BbvI GCAGC 9 cut(s) 58, 154, 333, 613, 1003, 1247, 1385, 1493, 1666
BccI CCATC 2 cut(s) 1060, 1709
BceAI ACGGC 1 cut(s) 252
BciVI GTATCC 1 cut(s) 476
BclI TGATCA 3 cut(s) 178, 406, 1399
BcnI CCSGG 1 cut(s) 1148
BcoDI GTCTC 3 cut(s) 330, 358, 1187
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 5 cut(s) 270, 459, 843, 1074, 1683
BfmI CTRYAG 1 cut(s) 538
BfoI RGCGCY 1 cut(s) 614
BfuI GTATCC 1 cut(s) 476
BglII AGATCT 1 cut(s) 395
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 1148
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 1 cut(s) 1522
BmgT120I GGNCC 1 cut(s) 437
BmrFI CCNGG 1 cut(s) 1148
BmsI GCATC 2 cut(s) 25, 1594
BpiI GAAGAC 4 cut(s) 152, 551, 574, 969
BplI GAGNNNNNCTC 2 cut(s) 661, 693
BpuEI CTTGAG 2 cut(s) 827, 959
BpuMI CCSGG 1 cut(s) 1148
BsaAI YACGTR 1 cut(s) 203
BsaBI GATNNNNATC 5 cut(s) 9, 15, 1578, 1584, 1719
BsaJI CCNNGG 2 cut(s) 471, 1146
BsaWI WCCGGW 2 cut(s) 34, 136
BsaXI ACNNNNNCTCC 6 cut(s) 24, 54, 779, 782, 809, 812
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 136
Bse1I ACTGG 2 cut(s) 355, 1660
Bse3DI GCAATG 4 cut(s) 1097, 1453, 1612, 1680
Bse8I GATNNNNATC 5 cut(s) 9, 15, 1578, 1584, 1719
BseDI CCNNGG 2 cut(s) 471, 1146
BseGI GGATG 8 cut(s) 16, 454, 732, 987, 1071, 1084, 1142, 1354
BseJI GATNNNNATC 5 cut(s) 9, 15, 1578, 1584, 1719
BseLI CCNNNNNNNGG 2 cut(s) 26, 136
BseMI GCAATG 4 cut(s) 1097, 1453, 1612, 1680
BseMII CTCAG 2 cut(s) 35, 1768
BseNI ACTGG 2 cut(s) 355, 1660
BseRI GAGGAG 4 cut(s) 294, 348, 787, 877
BseXI GCAGC 9 cut(s) 58, 154, 333, 613, 1003, 1247, 1385, 1493, 1666
BseYI CCCAGC 1 cut(s) 1263
BsgI GTGCAG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 1 cut(s) 361
BsiHKAI GWGCWC 3 cut(s) 42, 679, 1346
BsiHKCI CYCGRG 1 cut(s) 1522
BsiSI CCGG 6 cut(s) 35, 43, 137, 564, 598, 1148
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 2 cut(s) 26, 136
BsmAI GTCTC 3 cut(s) 330, 358, 1187
BsmBI CGTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 630
BsnI GGCC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 1522
Bsp1286I GDGCHC 3 cut(s) 42, 679, 1346
Bsp1407I TGTACA 1 cut(s) 528
BspACI CCGC 8 cut(s) 60, 149, 324, 1085, 1133, 1509, 1583, 1668
BspANI GGCC 1 cut(s) 361
BspCNI CTCAG 2 cut(s) 34, 1767
BspFNI CGCG 1 cut(s) 263
BspHI TCATGA 2 cut(s) 51, 666
BspPI GGATC 3 cut(s) 12, 1171, 1574
BspQI GCTCTTC 1 cut(s) 684
BsrBI CCGCTC 1 cut(s) 1668
BsrDI GCAATG 4 cut(s) 1097, 1453, 1612, 1680
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 2 cut(s) 355, 1660
BssECI CCNNGG 2 cut(s) 471, 1146
BssNAI GTATAC 1 cut(s) 32
Bst1107I GTATAC 1 cut(s) 32
Bst4CI ACNGT 6 cut(s) 29, 87, 158, 251, 308, 341
Bst6I CTCTTC 5 cut(s) 684, 829, 987, 1146, 1758
BstAPI GCANNNNNTGC 1 cut(s) 1679
BstAUI TGTACA 1 cut(s) 528
BstBAI YACGTR 1 cut(s) 203
BstDEI CTNAG 3 cut(s) 21, 773, 1754
BstF5I GGATG 8 cut(s) 16, 454, 732, 987, 1071, 1084, 1142, 1354
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 614
BstHHI GCGC 1 cut(s) 613
BstMAI GTCTC 3 cut(s) 330, 358, 1187
BstMWI GCNNNNNNNGC 4 cut(s) 46, 148, 610, 1679
BstSCI CCNGG 1 cut(s) 1146
BstSFI CTRYAG 1 cut(s) 538
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 9 cut(s) 58, 154, 333, 613, 1003, 1247, 1385, 1493, 1666
BstV2I GAAGAC 4 cut(s) 152, 551, 574, 969
BstX2I RGATCY 2 cut(s) 395, 1176
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 2 cut(s) 395, 1176
BstZ17I GTATAC 1 cut(s) 32
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 8 cut(s) 16, 454, 732, 987, 1071, 1084, 1142, 1354
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 2 cut(s) 679, 1653
CciI TCATGA 2 cut(s) 51, 666
CfoI GCGC 1 cut(s) 613
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 5 cut(s) 25, 267, 529, 1516, 1686
CviAII CATG 9 cut(s) 52, 212, 479, 667, 683, 755, 904, 1309, 1708
CviQI GTAC 5 cut(s) 25, 267, 529, 1516, 1686
DdeI CTNAG 3 cut(s) 21, 773, 1754
DraI TTTAAA 1 cut(s) 1284
EaeI YGGCCR 1 cut(s) 359
Eam1104I CTCTTC 5 cut(s) 684, 829, 987, 1146, 1758
EarI CTCTTC 5 cut(s) 684, 829, 987, 1146, 1758
EciI GGCGGA 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 437
Eco47III AGCGCT 1 cut(s) 612
Eco53kI GAGCTC 1 cut(s) 40
Eco72I CACGTG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 1522
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 437
EcoT38I GRGCYC 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 9 cut(s) 55, 215, 482, 670, 686, 758, 907, 1312, 1711
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 1 cut(s) 630
FatI CATG 9 cut(s) 51, 211, 478, 666, 682, 754, 903, 1308, 1707
FbaI TGATCA 3 cut(s) 178, 406, 1399
FblI GTMKAC 2 cut(s) 31, 89
FokI GGATG 8 cut(s) 3, 461, 719, 994, 1078, 1091, 1129, 1361
FriOI GRGCYC 1 cut(s) 42
FspBI CTAG 5 cut(s) 270, 459, 843, 1074, 1683
GlaI GCGC 1 cut(s) 612
GsaI CCCAGC 1 cut(s) 1267
HaeII RGCGCY 1 cut(s) 614
HaeIII GGCC 1 cut(s) 361
HapII CCGG 6 cut(s) 35, 43, 137, 564, 598, 1148
HhaI GCGC 1 cut(s) 613
Hin1II CATG 9 cut(s) 55, 215, 482, 670, 686, 758, 907, 1312, 1711
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HincII GTYRAC 1 cut(s) 948
HindII GTYRAC 1 cut(s) 948
HindIII AAGCTT 1 cut(s) 1286
HinfI GANTC 6 cut(s) 523, 623, 839, 1313, 1384, 1768
HpaII CCGG 6 cut(s) 35, 43, 137, 564, 598, 1148
HphI GGTGA 2 cut(s) 1099, 1280
Hpy166II GTNNAC 5 cut(s) 32, 90, 171, 948, 1516
Hpy188I TCNGA 9 cut(s) 112, 472, 802, 829, 1181, 1348, 1404, 1665, 1725
Hpy188III TCNNGA 8 cut(s) 8, 52, 182, 302, 404, 667, 1325, 1556
Hpy8I GTNNAC 5 cut(s) 32, 90, 171, 948, 1516
HpyAV CCTTC 5 cut(s) 60, 348, 548, 824, 846
HpyCH4III ACNGT 6 cut(s) 29, 87, 158, 251, 308, 341
HpyCH4IV ACGT 5 cut(s) 202, 711, 725, 741, 1647
HpyCH4V TGCA 6 cut(s) 142, 507, 1019, 1102, 1422, 1673
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 148, 610, 1679
HpyF3I CTNAG 3 cut(s) 21, 773, 1754
HpySE526I ACGT 5 cut(s) 202, 711, 725, 741, 1647
Hsp92II CATG 9 cut(s) 55, 215, 482, 670, 686, 758, 907, 1312, 1711
HspAI GCGC 1 cut(s) 611
Ksp22I TGATCA 3 cut(s) 178, 406, 1399
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 3 cut(s) 37, 45, 139
Lsp1109I GCAGC 9 cut(s) 58, 154, 333, 613, 1003, 1247, 1385, 1493, 1666
LweI GCATC 2 cut(s) 25, 1594
MaeI CTAG 5 cut(s) 270, 459, 843, 1074, 1683
MaeII ACGT 5 cut(s) 202, 711, 725, 741, 1647
MaeIII GTNAC 3 cut(s) 251, 712, 1648
MbiI CCGCTC 1 cut(s) 1668
MflI RGATCY 2 cut(s) 395, 1176
MhlI GDGCHC 3 cut(s) 42, 679, 1346
MluCI AATT 4 cut(s) 390, 413, 1495, 1726
MlyI GAGTC 1 cut(s) 1307
MmeI TCCRAC 3 cut(s) 366, 753, 848
MseI TTAA 4 cut(s) 126, 257, 1245, 1283
MspA1I CMGCKG 3 cut(s) 324, 1135, 1506
MspI CCGG 6 cut(s) 35, 43, 137, 564, 598, 1148
MspR9I CCNGG 1 cut(s) 1148
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 4 cut(s) 46, 148, 610, 1679
NciI CCSGG 1 cut(s) 1148
NlaIII CATG 9 cut(s) 55, 215, 482, 670, 686, 758, 907, 1312, 1711
NmeAIII GCCGAG 1 cut(s) 387
PagI TCATGA 2 cut(s) 51, 666
PciSI GCTCTTC 1 cut(s) 684
PfeI GAWTC 5 cut(s) 523, 623, 839, 1384, 1768
PleI GAGTC 1 cut(s) 1307
PmaCI CACGTG 1 cut(s) 203
PmlI CACGTG 1 cut(s) 203
PpsI GAGTC 1 cut(s) 1307
Ppu21I YACGTR 1 cut(s) 203
PpuMI RGGWCCY 1 cut(s) 437
Psp124BI GAGCTC 1 cut(s) 42
Psp1406I AACGTT 2 cut(s) 711, 741
Psp5II RGGWCCY 1 cut(s) 437
PspCI CACGTG 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 1263
PspPI GGNCC 1 cut(s) 437
PspPPI RGGWCCY 1 cut(s) 437
PsuI RGATCY 2 cut(s) 395, 1176
PvuII CAGCTG 1 cut(s) 1506
RsaI GTAC 5 cut(s) 26, 268, 530, 1517, 1687
RsaNI GTAC 5 cut(s) 25, 267, 529, 1516, 1686
SacI GAGCTC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 4 cut(s) 126, 257, 1245, 1283
Sau96I GGNCC 1 cut(s) 437
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 1 cut(s) 1307
ScrFI CCNGG 1 cut(s) 1148
SduI GDGCHC 3 cut(s) 42, 679, 1346
SfaNI GCATC 2 cut(s) 25, 1594
SfcI CTRYAG 1 cut(s) 538
SinI GGWCC 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 806, 938
SmoI CTYRAG 2 cut(s) 806, 938
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 4 cut(s) 390, 413, 1495, 1726
SsiI CCGC 8 cut(s) 60, 149, 324, 1085, 1133, 1509, 1583, 1668
SspMI CTAG 5 cut(s) 270, 459, 843, 1074, 1683
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 1146
TaaI ACNGT 6 cut(s) 29, 87, 158, 251, 308, 341
TaiI ACGT 5 cut(s) 205, 714, 728, 744, 1650
TaqI TCGA 3 cut(s) 606, 1316, 1555
TasI AATT 4 cut(s) 390, 413, 1495, 1726
TatI WGTACW 4 cut(s) 266, 528, 1515, 1685
TauI GCSGC 2 cut(s) 1135, 1512
TfiI GAWTC 5 cut(s) 523, 623, 839, 1384, 1768
Tru1I TTAA 4 cut(s) 126, 257, 1245, 1283
Tru9I TTAA 4 cut(s) 126, 257, 1245, 1283
TscAI CASTG 2 cut(s) 679, 1660
TseI GCWGC 9 cut(s) 46, 142, 321, 601, 1016, 1260, 1373, 1506, 1679
TspGWI ACGGA 2 cut(s) 591, 994
TspRI CASTG 2 cut(s) 679, 1660
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 2 cut(s) 413, 1726
XmiI GTMKAC 2 cut(s) 31, 89
XspI CTAG 5 cut(s) 270, 459, 843, 1074, 1683
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.