transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G10000 AT3G10000 AT5G03680 |
| fragaria_vesca | FvH4_6g17990 FvH4_6g17990 FvH4_7g05970 |
| malus_domestica | MD02G1247700.v1.1 MD07G1068800.v1.1 MD12G1018900.v1.1 MD14G1016900.v1.1 |
| prunus_persica | Prupe.2G086500_v2.0.a1 Prupe.7G116400_v2.0.a1 |
| pyrus_communis | pycom02g21160 pycom07g05290 pycom12g01570 pycom14g01450 |
| rosa_chinensis | RchiOBHm_Chr1g0333231 RchiOBHm_Chr3g0472271 |
| rosa_laevigata | RLG00000024094 RLG00000029619 |
| rosa_multiflora | Rmu_sc0001214.1_g000051 Rmu_sc0008192.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00317680 Rroxscaffold_6G00409120 |
| rosa_rugosa | Rorug01G0108100 Rorug03G0123400 |
| rosa_samantha | Rh1AG131100 Rh1BG100500 Rh1CG125000 Rh1DG136500 Rh3AG175700 Rh3BG201200 Rh3CG192500 Rh3CG199600 Rh3CG199700 Rh3DG173800 |
| rosa_wichuraiana | Rw1G010840 Rw3G016550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 1668 |
| AccI | GTMKAC | 2 cut(s) | 31, 89 |
| AccII | CGCG | 1 cut(s) | 263 |
| AciI | CCGC | 8 cut(s) | 60, 149, 324, 1085, 1133, 1509, 1583, 1668 |
| AclI | AACGTT | 2 cut(s) | 711, 741 |
| AclWI | GGATC | 3 cut(s) | 12, 1171, 1574 |
| AcoI | YGGCCR | 1 cut(s) | 359 |
| AcsI | RAATTY | 2 cut(s) | 413, 1726 |
| AcvI | CACGTG | 1 cut(s) | 203 |
| AfaI | GTAC | 5 cut(s) | 26, 268, 530, 1517, 1687 |
| AfeI | AGCGCT | 1 cut(s) | 612 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 26, 136 |
| AgsI | TTSAA | 6 cut(s) | 234, 418, 962, 1013, 1325, 1620 |
| AhlI | ACTAGT | 1 cut(s) | 269 |
| Alw21I | GWGCWC | 3 cut(s) | 42, 679, 1346 |
| Alw26I | GTCTC | 3 cut(s) | 330, 358, 1187 |
| AlwI | GGATC | 3 cut(s) | 12, 1171, 1574 |
| Ama87I | CYCGRG | 1 cut(s) | 1522 |
| Aor51HI | AGCGCT | 1 cut(s) | 612 |
| AoxI | GGCC | 1 cut(s) | 359 |
| ApeKI | GCWGC | 9 cut(s) | 46, 142, 321, 601, 1016, 1260, 1373, 1506, 1679 |
| ApoI | RAATTY | 2 cut(s) | 413, 1726 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 760, 792, 808, 840 |
| AspLEI | GCGC | 1 cut(s) | 613 |
| AspS9I | GGNCC | 1 cut(s) | 437 |
| AsuC2I | CCSGG | 1 cut(s) | 1148 |
| AsuHPI | GGTGA | 2 cut(s) | 1099, 1280 |
| AvaI | CYCGRG | 1 cut(s) | 1522 |
| AvaII | GGWCC | 1 cut(s) | 437 |
| BanII | GRGCYC | 1 cut(s) | 42 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 58, 90 |
| BbrPI | CACGTG | 1 cut(s) | 203 |
| BbsI | GAAGAC | 4 cut(s) | 152, 551, 574, 969 |
| Bbv12I | GWGCWC | 3 cut(s) | 42, 679, 1346 |
| BbvI | GCAGC | 9 cut(s) | 58, 154, 333, 613, 1003, 1247, 1385, 1493, 1666 |
| BccI | CCATC | 2 cut(s) | 1060, 1709 |
| BceAI | ACGGC | 1 cut(s) | 252 |
| BciVI | GTATCC | 1 cut(s) | 476 |
| BclI | TGATCA | 3 cut(s) | 178, 406, 1399 |
| BcnI | CCSGG | 1 cut(s) | 1148 |
| BcoDI | GTCTC | 3 cut(s) | 330, 358, 1187 |
| BcuI | ACTAGT | 1 cut(s) | 269 |
| BfaI | CTAG | 5 cut(s) | 270, 459, 843, 1074, 1683 |
| BfmI | CTRYAG | 1 cut(s) | 538 |
| BfoI | RGCGCY | 1 cut(s) | 614 |
| BfuI | GTATCC | 1 cut(s) | 476 |
| BglII | AGATCT | 1 cut(s) | 395 |
| BmcAI | AGTACT | 1 cut(s) | 268 |
| Bme1390I | CCNGG | 1 cut(s) | 1148 |
| Bme18I | GGWCC | 1 cut(s) | 437 |
| BmeT110I | CYCGRG | 1 cut(s) | 1522 |
| BmgT120I | GGNCC | 1 cut(s) | 437 |
| BmrFI | CCNGG | 1 cut(s) | 1148 |
| BmsI | GCATC | 2 cut(s) | 25, 1594 |
| BpiI | GAAGAC | 4 cut(s) | 152, 551, 574, 969 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 661, 693 |
| BpuEI | CTTGAG | 2 cut(s) | 827, 959 |
| BpuMI | CCSGG | 1 cut(s) | 1148 |
| BsaAI | YACGTR | 1 cut(s) | 203 |
| BsaBI | GATNNNNATC | 5 cut(s) | 9, 15, 1578, 1584, 1719 |
| BsaJI | CCNNGG | 2 cut(s) | 471, 1146 |
| BsaWI | WCCGGW | 2 cut(s) | 34, 136 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 24, 54, 779, 782, 809, 812 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 26, 136 |
| Bse1I | ACTGG | 2 cut(s) | 355, 1660 |
| Bse3DI | GCAATG | 4 cut(s) | 1097, 1453, 1612, 1680 |
| Bse8I | GATNNNNATC | 5 cut(s) | 9, 15, 1578, 1584, 1719 |
| BseDI | CCNNGG | 2 cut(s) | 471, 1146 |
| BseGI | GGATG | 8 cut(s) | 16, 454, 732, 987, 1071, 1084, 1142, 1354 |
| BseJI | GATNNNNATC | 5 cut(s) | 9, 15, 1578, 1584, 1719 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 26, 136 |
| BseMI | GCAATG | 4 cut(s) | 1097, 1453, 1612, 1680 |
| BseMII | CTCAG | 2 cut(s) | 35, 1768 |
| BseNI | ACTGG | 2 cut(s) | 355, 1660 |
| BseRI | GAGGAG | 4 cut(s) | 294, 348, 787, 877 |
| BseXI | GCAGC | 9 cut(s) | 58, 154, 333, 613, 1003, 1247, 1385, 1493, 1666 |
| BseYI | CCCAGC | 1 cut(s) | 1263 |
| BsgI | GTGCAG | 1 cut(s) | 161 |
| Bsh1236I | CGCG | 1 cut(s) | 263 |
| BshFI | GGCC | 1 cut(s) | 361 |
| BsiHKAI | GWGCWC | 3 cut(s) | 42, 679, 1346 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1522 |
| BsiSI | CCGG | 6 cut(s) | 35, 43, 137, 564, 598, 1148 |
| BslFI | GGGAC | 1 cut(s) | 630 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 26, 136 |
| BsmAI | GTCTC | 3 cut(s) | 330, 358, 1187 |
| BsmBI | CGTCTC | 1 cut(s) | 330 |
| BsmFI | GGGAC | 1 cut(s) | 630 |
| BsnI | GGCC | 1 cut(s) | 361 |
| BsoBI | CYCGRG | 1 cut(s) | 1522 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 679, 1346 |
| Bsp1407I | TGTACA | 1 cut(s) | 528 |
| BspACI | CCGC | 8 cut(s) | 60, 149, 324, 1085, 1133, 1509, 1583, 1668 |
| BspANI | GGCC | 1 cut(s) | 361 |
| BspCNI | CTCAG | 2 cut(s) | 34, 1767 |
| BspFNI | CGCG | 1 cut(s) | 263 |
| BspHI | TCATGA | 2 cut(s) | 51, 666 |
| BspPI | GGATC | 3 cut(s) | 12, 1171, 1574 |
| BspQI | GCTCTTC | 1 cut(s) | 684 |
| BsrBI | CCGCTC | 1 cut(s) | 1668 |
| BsrDI | GCAATG | 4 cut(s) | 1097, 1453, 1612, 1680 |
| BsrGI | TGTACA | 1 cut(s) | 528 |
| BsrI | ACTGG | 2 cut(s) | 355, 1660 |
| BssECI | CCNNGG | 2 cut(s) | 471, 1146 |
| BssNAI | GTATAC | 1 cut(s) | 32 |
| Bst1107I | GTATAC | 1 cut(s) | 32 |
| Bst4CI | ACNGT | 6 cut(s) | 29, 87, 158, 251, 308, 341 |
| Bst6I | CTCTTC | 5 cut(s) | 684, 829, 987, 1146, 1758 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1679 |
| BstAUI | TGTACA | 1 cut(s) | 528 |
| BstBAI | YACGTR | 1 cut(s) | 203 |
| BstDEI | CTNAG | 3 cut(s) | 21, 773, 1754 |
| BstF5I | GGATG | 8 cut(s) | 16, 454, 732, 987, 1071, 1084, 1142, 1354 |
| BstFNI | CGCG | 1 cut(s) | 263 |
| BstH2I | RGCGCY | 1 cut(s) | 614 |
| BstHHI | GCGC | 1 cut(s) | 613 |
| BstMAI | GTCTC | 3 cut(s) | 330, 358, 1187 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 46, 148, 610, 1679 |
| BstSCI | CCNGG | 1 cut(s) | 1146 |
| BstSFI | CTRYAG | 1 cut(s) | 538 |
| BstUI | CGCG | 1 cut(s) | 263 |
| BstV1I | GCAGC | 9 cut(s) | 58, 154, 333, 613, 1003, 1247, 1385, 1493, 1666 |
| BstV2I | GAAGAC | 4 cut(s) | 152, 551, 574, 969 |
| BstX2I | RGATCY | 2 cut(s) | 395, 1176 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 494 |
| BstYI | RGATCY | 2 cut(s) | 395, 1176 |
| BstZ17I | GTATAC | 1 cut(s) | 32 |
| BsuI | GTATCC | 1 cut(s) | 476 |
| BsuRI | GGCC | 1 cut(s) | 361 |
| BtsCI | GGATG | 8 cut(s) | 16, 454, 732, 987, 1071, 1084, 1142, 1354 |
| BtsI | GCAGTG | 1 cut(s) | 679 |
| BtsIMutI | CAGTG | 2 cut(s) | 679, 1653 |
| CciI | TCATGA | 2 cut(s) | 51, 666 |
| CfoI | GCGC | 1 cut(s) | 613 |
| Cfr13I | GGNCC | 1 cut(s) | 437 |
| Csp6I | GTAC | 5 cut(s) | 25, 267, 529, 1516, 1686 |
| CviAII | CATG | 9 cut(s) | 52, 212, 479, 667, 683, 755, 904, 1309, 1708 |
| CviQI | GTAC | 5 cut(s) | 25, 267, 529, 1516, 1686 |
| DdeI | CTNAG | 3 cut(s) | 21, 773, 1754 |
| DraI | TTTAAA | 1 cut(s) | 1284 |
| EaeI | YGGCCR | 1 cut(s) | 359 |
| Eam1104I | CTCTTC | 5 cut(s) | 684, 829, 987, 1146, 1758 |
| EarI | CTCTTC | 5 cut(s) | 684, 829, 987, 1146, 1758 |
| EciI | GGCGGA | 1 cut(s) | 75 |
| Ecl136II | GAGCTC | 1 cut(s) | 40 |
| Eco24I | GRGCYC | 1 cut(s) | 42 |
| Eco47I | GGWCC | 1 cut(s) | 437 |
| Eco47III | AGCGCT | 1 cut(s) | 612 |
| Eco53kI | GAGCTC | 1 cut(s) | 40 |
| Eco72I | CACGTG | 1 cut(s) | 203 |
| Eco88I | CYCGRG | 1 cut(s) | 1522 |
| EcoICRI | GAGCTC | 1 cut(s) | 40 |
| EcoO109I | RGGNCCY | 1 cut(s) | 437 |
| EcoT38I | GRGCYC | 1 cut(s) | 42 |
| Esp3I | CGTCTC | 1 cut(s) | 330 |
| FaeI | CATG | 9 cut(s) | 55, 215, 482, 670, 686, 758, 907, 1312, 1711 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 426, 458 |
| FaqI | GGGAC | 1 cut(s) | 630 |
| FatI | CATG | 9 cut(s) | 51, 211, 478, 666, 682, 754, 903, 1308, 1707 |
| FbaI | TGATCA | 3 cut(s) | 178, 406, 1399 |
| FblI | GTMKAC | 2 cut(s) | 31, 89 |
| FokI | GGATG | 8 cut(s) | 3, 461, 719, 994, 1078, 1091, 1129, 1361 |
| FriOI | GRGCYC | 1 cut(s) | 42 |
| FspBI | CTAG | 5 cut(s) | 270, 459, 843, 1074, 1683 |
| GlaI | GCGC | 1 cut(s) | 612 |
| GsaI | CCCAGC | 1 cut(s) | 1267 |
| HaeII | RGCGCY | 1 cut(s) | 614 |
| HaeIII | GGCC | 1 cut(s) | 361 |
| HapII | CCGG | 6 cut(s) | 35, 43, 137, 564, 598, 1148 |
| HhaI | GCGC | 1 cut(s) | 613 |
| Hin1II | CATG | 9 cut(s) | 55, 215, 482, 670, 686, 758, 907, 1312, 1711 |
| Hin6I | GCGC | 1 cut(s) | 611 |
| HinP1I | GCGC | 1 cut(s) | 611 |
| HincII | GTYRAC | 1 cut(s) | 948 |
| HindII | GTYRAC | 1 cut(s) | 948 |
| HindIII | AAGCTT | 1 cut(s) | 1286 |
| HinfI | GANTC | 6 cut(s) | 523, 623, 839, 1313, 1384, 1768 |
| HpaII | CCGG | 6 cut(s) | 35, 43, 137, 564, 598, 1148 |
| HphI | GGTGA | 2 cut(s) | 1099, 1280 |
| Hpy166II | GTNNAC | 5 cut(s) | 32, 90, 171, 948, 1516 |
| Hpy188I | TCNGA | 9 cut(s) | 112, 472, 802, 829, 1181, 1348, 1404, 1665, 1725 |
| Hpy188III | TCNNGA | 8 cut(s) | 8, 52, 182, 302, 404, 667, 1325, 1556 |
| Hpy8I | GTNNAC | 5 cut(s) | 32, 90, 171, 948, 1516 |
| HpyAV | CCTTC | 5 cut(s) | 60, 348, 548, 824, 846 |
| HpyCH4III | ACNGT | 6 cut(s) | 29, 87, 158, 251, 308, 341 |
| HpyCH4IV | ACGT | 5 cut(s) | 202, 711, 725, 741, 1647 |
| HpyCH4V | TGCA | 6 cut(s) | 142, 507, 1019, 1102, 1422, 1673 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 46, 148, 610, 1679 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 773, 1754 |
| HpySE526I | ACGT | 5 cut(s) | 202, 711, 725, 741, 1647 |
| Hsp92II | CATG | 9 cut(s) | 55, 215, 482, 670, 686, 758, 907, 1312, 1711 |
| HspAI | GCGC | 1 cut(s) | 611 |
| Ksp22I | TGATCA | 3 cut(s) | 178, 406, 1399 |
| LguI | GCTCTTC | 1 cut(s) | 684 |
| LmnI | GCTCC | 3 cut(s) | 37, 45, 139 |
| Lsp1109I | GCAGC | 9 cut(s) | 58, 154, 333, 613, 1003, 1247, 1385, 1493, 1666 |
| LweI | GCATC | 2 cut(s) | 25, 1594 |
| MaeI | CTAG | 5 cut(s) | 270, 459, 843, 1074, 1683 |
| MaeII | ACGT | 5 cut(s) | 202, 711, 725, 741, 1647 |
| MaeIII | GTNAC | 3 cut(s) | 251, 712, 1648 |
| MbiI | CCGCTC | 1 cut(s) | 1668 |
| MflI | RGATCY | 2 cut(s) | 395, 1176 |
| MhlI | GDGCHC | 3 cut(s) | 42, 679, 1346 |
| MluCI | AATT | 4 cut(s) | 390, 413, 1495, 1726 |
| MlyI | GAGTC | 1 cut(s) | 1307 |
| MmeI | TCCRAC | 3 cut(s) | 366, 753, 848 |
| MseI | TTAA | 4 cut(s) | 126, 257, 1245, 1283 |
| MspA1I | CMGCKG | 3 cut(s) | 324, 1135, 1506 |
| MspI | CCGG | 6 cut(s) | 35, 43, 137, 564, 598, 1148 |
| MspR9I | CCNGG | 1 cut(s) | 1148 |
| MvnI | CGCG | 1 cut(s) | 263 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 46, 148, 610, 1679 |
| NciI | CCSGG | 1 cut(s) | 1148 |
| NlaIII | CATG | 9 cut(s) | 55, 215, 482, 670, 686, 758, 907, 1312, 1711 |
| NmeAIII | GCCGAG | 1 cut(s) | 387 |
| PagI | TCATGA | 2 cut(s) | 51, 666 |
| PciSI | GCTCTTC | 1 cut(s) | 684 |
| PfeI | GAWTC | 5 cut(s) | 523, 623, 839, 1384, 1768 |
| PleI | GAGTC | 1 cut(s) | 1307 |
| PmaCI | CACGTG | 1 cut(s) | 203 |
| PmlI | CACGTG | 1 cut(s) | 203 |
| PpsI | GAGTC | 1 cut(s) | 1307 |
| Ppu21I | YACGTR | 1 cut(s) | 203 |
| PpuMI | RGGWCCY | 1 cut(s) | 437 |
| Psp124BI | GAGCTC | 1 cut(s) | 42 |
| Psp1406I | AACGTT | 2 cut(s) | 711, 741 |
| Psp5II | RGGWCCY | 1 cut(s) | 437 |
| PspCI | CACGTG | 1 cut(s) | 203 |
| PspFI | CCCAGC | 1 cut(s) | 1263 |
| PspPI | GGNCC | 1 cut(s) | 437 |
| PspPPI | RGGWCCY | 1 cut(s) | 437 |
| PsuI | RGATCY | 2 cut(s) | 395, 1176 |
| PvuII | CAGCTG | 1 cut(s) | 1506 |
| RsaI | GTAC | 5 cut(s) | 26, 268, 530, 1517, 1687 |
| RsaNI | GTAC | 5 cut(s) | 25, 267, 529, 1516, 1686 |
| SacI | GAGCTC | 1 cut(s) | 42 |
| SapI | GCTCTTC | 1 cut(s) | 684 |
| SaqAI | TTAA | 4 cut(s) | 126, 257, 1245, 1283 |
| Sau96I | GGNCC | 1 cut(s) | 437 |
| ScaI | AGTACT | 1 cut(s) | 268 |
| SchI | GAGTC | 1 cut(s) | 1307 |
| ScrFI | CCNGG | 1 cut(s) | 1148 |
| SduI | GDGCHC | 3 cut(s) | 42, 679, 1346 |
| SfaNI | GCATC | 2 cut(s) | 25, 1594 |
| SfcI | CTRYAG | 1 cut(s) | 538 |
| SinI | GGWCC | 1 cut(s) | 437 |
| SmlI | CTYRAG | 2 cut(s) | 806, 938 |
| SmoI | CTYRAG | 2 cut(s) | 806, 938 |
| SpeI | ACTAGT | 1 cut(s) | 269 |
| Sse9I | AATT | 4 cut(s) | 390, 413, 1495, 1726 |
| SsiI | CCGC | 8 cut(s) | 60, 149, 324, 1085, 1133, 1509, 1583, 1668 |
| SspMI | CTAG | 5 cut(s) | 270, 459, 843, 1074, 1683 |
| SstI | GAGCTC | 1 cut(s) | 42 |
| StyD4I | CCNGG | 1 cut(s) | 1146 |
| TaaI | ACNGT | 6 cut(s) | 29, 87, 158, 251, 308, 341 |
| TaiI | ACGT | 5 cut(s) | 205, 714, 728, 744, 1650 |
| TaqI | TCGA | 3 cut(s) | 606, 1316, 1555 |
| TasI | AATT | 4 cut(s) | 390, 413, 1495, 1726 |
| TatI | WGTACW | 4 cut(s) | 266, 528, 1515, 1685 |
| TauI | GCSGC | 2 cut(s) | 1135, 1512 |
| TfiI | GAWTC | 5 cut(s) | 523, 623, 839, 1384, 1768 |
| Tru1I | TTAA | 4 cut(s) | 126, 257, 1245, 1283 |
| Tru9I | TTAA | 4 cut(s) | 126, 257, 1245, 1283 |
| TscAI | CASTG | 2 cut(s) | 679, 1660 |
| TseI | GCWGC | 9 cut(s) | 46, 142, 321, 601, 1016, 1260, 1373, 1506, 1679 |
| TspGWI | ACGGA | 2 cut(s) | 591, 994 |
| TspRI | CASTG | 2 cut(s) | 679, 1660 |
| VpaK11BI | GGWCC | 1 cut(s) | 437 |
| XapI | RAATTY | 2 cut(s) | 413, 1726 |
| XmiI | GTMKAC | 2 cut(s) | 31, 89 |
| XspI | CTAG | 5 cut(s) | 270, 459, 843, 1074, 1683 |
| ZrmI | AGTACT | 1 cut(s) | 268 |