FvH4_7g05970
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002927
Physical Location & Seq
Reverse (-)
6178396 .. 6180698
2303 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05970.t1

Sequence Viewer

Length: 1302 bp
ATGGATGATTATCCAGACCTCCGGCAACTGATGGCCTCAAGAACACAGCAGTTCGTACAATTCCCAGACCCGTTTTCAGTACGACCTTTCAATAATTATAACCCCAATAGTAGTGTCGCTGTAGGTCAGGAGGTTAATACTCGTGGATTGTTTGAGTTTGGTTCTGCTGCTTCTGCTCCTCCTAGTTTTAGCACAATCATTAGTAACACTAGTGTTGCTGCTAATCTGAATGGTTCTACTGCTGGTTCATCAGTTGGTTCGTTGTATGGCGGGTTAGAGTTGATGAATCATCAGCATGGGTGGAGTATCAATGGGAATGATGGGTCAGCCGGCAATAACAGCAGATGGCCAAGGCAAGAAACTCTTACTCTTCTGGAGATTAGATCCAGTCTCGATTCCAAGTTCAAGGAGACTAATCAGAAAGGTCCCTTGTGGGATGAGGTTTCTAGGATAATGAGTGAAGAACATGGATATCAGAGGAGTGGGAAGAAATGCAAGGAGAAGTTTGAGAATTTATACAAGTACTACAAGAAAACCAAAGAAGGCAAAGCTGGGAGACAAGATGGGAAGCACTACAGGTTCTTTCGTCAGCTTGAAGCGATCTACGGTGACCGAAGTACCAATCCGTTGTGCTCAACTTCAGATCAAACCAATTTAACTGGTACATTAAACCCTAGTCTTCTTTATAATCACACCACTGCTGCTATTAATAATCAAGAATATCAAGAAGTTAAGCTTGGTGCTGAGAGCCTTAGTTTCTCCAACAATTCAACTGACATGGAAACCTCCACCTCGGAGAACAATGGAGATGATCTTTCAAATTCAGCTAATGAGAACCAAAGGTGTTCAAGGGGTGTGAAGAAGACCTGGAAGGCACATGTGGAAGAGTTCGTGAATTCCCAAATGATGAAGGTGATGAAGGCTCAAGAAGGTTGGATGGAGAAGATGTTGAAGACTATTGAAGGTAGAGAAGAGGAGAGGTTTTCAAAAGAAGAAGAGTGGAGGAAGCGAGAGGAGGAGCGGTTTAAACAACAAGTAGATGAATTCTGGGCTAAAGAGAGAGCTTGGGTTGAAACTCGAGATGCTTCAATAATGGAGGCTGTAGGCAAAATTAGAGGTATGGGAACTAACAGTTACAACAACAAGGCCAAGGATGAGAACACGGGAGGACAGCAGCTGATGGGTGGAGGCCTAGTACCTTCAAGTTCTAATTATATGAATATGGAATCTAGCTCCCTTTACATTCCCACGAACGAAGCAGAAAATCTGTGGAACAGGTATGGTGGGAAGCTCAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

434

Amino Acids

48.96

Weight (kDa)

6.19

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 114 - 201 2.2e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 99, 687
AccBSI CCGCTC 1 cut(s) 1021
AciI CCGC 2 cut(s) 270, 1021
AclWI GGATC 1 cut(s) 378
AcoI YGGCCR 1 cut(s) 347
AcsI RAATTY 4 cut(s) 511, 820, 895, 1043
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 6 cut(s) 57, 81, 524, 619, 664, 1197
AflIII ACRYGT 1 cut(s) 877
AhlI ACTAGT 1 cut(s) 209
AjnI CCWGG 1 cut(s) 866
AjuI GAANNNNNNNTTGG 2 cut(s) 720, 752
AluBI AGCT 8 cut(s) 551, 592, 736, 827, 1064, 1177, 1233, 1291
AluI AGCT 8 cut(s) 551, 592, 736, 827, 1064, 1177, 1233, 1291
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 3 cut(s) 395, 404, 550
AlwI GGATC 1 cut(s) 378
AlwNI CAGNNNCTG 1 cut(s) 1177
Ama87I CYCGRG 1 cut(s) 1077
AoxI GGCC 4 cut(s) 33, 347, 1146, 1189
ApeKI GCWGC 4 cut(s) 167, 218, 701, 1174
ApoI RAATTY 4 cut(s) 511, 820, 895, 1043
AseI ATTAAT 1 cut(s) 708
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 620, 925
AvaI CYCGRG 1 cut(s) 1077
AvaII GGWCC 1 cut(s) 425
BaeI ACNNNNGTAYC 2 cut(s) 601, 634
BalI TGGCCA 1 cut(s) 349
BauI CACGAG 1 cut(s) 141
BbsI GAAGAC 3 cut(s) 671, 869, 959
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 4 cut(s) 154, 205, 688, 1186
BccI CCATC 6 cut(s) 25, 314, 339, 557, 931, 1174
BciT130I CCWGG 1 cut(s) 868
BcoDI GTCTC 3 cut(s) 395, 404, 550
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 6 cut(s) 183, 210, 447, 675, 1193, 1230
BfmI CTRYAG 3 cut(s) 120, 574, 1101
BisI GCNGC 4 cut(s) 168, 219, 702, 1175
BlpI GCTNAGC 1 cut(s) 1292
BlsI GCNGC 4 cut(s) 169, 220, 703, 1176
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 1 cut(s) 868
Bme18I GGWCC 1 cut(s) 425
BmeT110I CYCGRG 1 cut(s) 1077
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 427
BmrFI CCNGG 1 cut(s) 868
BmsI GCATC 1 cut(s) 1072
BpiI GAAGAC 3 cut(s) 671, 869, 959
BpmI CTGGAG 1 cut(s) 395
Bpu1102I GCTNAGC 1 cut(s) 1292
BpuEI CTTGAG 2 cut(s) 22, 909
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 350, 792, 1149
BsaXI ACNNNNNCTCC 6 cut(s) 932, 962, 1007, 1037, 1179, 1209
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 2 cut(s) 387, 664
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 1 cut(s) 868
BseDI CCNNGG 3 cut(s) 350, 792, 1149
BseGI GGATG 4 cut(s) 10, 442, 942, 1159
BseJI GATNNNNATC 1 cut(s) 9
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 2 cut(s) 387, 664
BseRI GAGGAG 5 cut(s) 168, 493, 989, 1028, 1031
BseXI GCAGC 4 cut(s) 154, 205, 688, 1186
BseYI CCCAGC 1 cut(s) 551
BshFI GGCC 4 cut(s) 35, 349, 1148, 1191
BsiHKAI GWGCWC 1 cut(s) 635
BsiHKCI CYCGRG 1 cut(s) 1077
BsiSI CCGG 2 cut(s) 22, 330
BslFI GGGAC 1 cut(s) 411
BsmAI GTCTC 3 cut(s) 395, 404, 550
BsmFI GGGAC 1 cut(s) 411
BsnI GGCC 4 cut(s) 35, 349, 1148, 1191
BsoBI CYCGRG 1 cut(s) 1077
Bsp1286I GDGCHC 1 cut(s) 635
Bsp143I GATC 4 cut(s) 383, 600, 643, 811
Bsp1720I GCTNAGC 1 cut(s) 1292
BspACI CCGC 2 cut(s) 270, 1021
BspANI GGCC 4 cut(s) 35, 349, 1148, 1191
BspCNI CTCAG 1 cut(s) 736
BspLI GGNNCC 1 cut(s) 427
BspPI GGATC 1 cut(s) 378
BsrBI CCGCTC 1 cut(s) 1021
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 2 cut(s) 387, 664
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 350, 792, 1149
BssMI GATC 4 cut(s) 383, 600, 643, 811
BssSI CACGAG 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 350, 1149
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 868
Bst4CI ACNGT 2 cut(s) 608, 1133
Bst6I CTCTTC 4 cut(s) 375, 879, 966, 990
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 3 cut(s) 744, 752, 1292
BstEII GGTNACC 1 cut(s) 608
BstF5I GGATG 4 cut(s) 10, 442, 942, 1159
BstKTI GATC 4 cut(s) 386, 603, 646, 814
BstMAI GTCTC 3 cut(s) 395, 404, 550
BstMBI GATC 4 cut(s) 383, 600, 643, 811
BstMWI GCNNNNNNNGC 2 cut(s) 173, 339
BstNI CCWGG 1 cut(s) 868
BstNSI RCATGY 1 cut(s) 881
BstPI GGTNACC 1 cut(s) 608
BstSCI CCNGG 1 cut(s) 866
BstSFI CTRYAG 3 cut(s) 120, 574, 1101
BstV1I GCAGC 4 cut(s) 154, 205, 688, 1186
BstV2I GAAGAC 3 cut(s) 671, 869, 959
BstX2I RGATCY 1 cut(s) 383
BstYI RGATCY 1 cut(s) 383
BsuRI GGCC 4 cut(s) 35, 349, 1148, 1191
BtsCI GGATG 4 cut(s) 10, 442, 942, 1159
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 1177
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 425
Csp6I GTAC 6 cut(s) 56, 80, 523, 618, 663, 1196
CviAII CATG 4 cut(s) 296, 467, 778, 878
CviQI GTAC 6 cut(s) 56, 80, 523, 618, 663, 1196
DdeI CTNAG 3 cut(s) 744, 752, 1292
DpnI GATC 4 cut(s) 385, 602, 645, 813
DpnII GATC 4 cut(s) 383, 600, 643, 811
DraI TTTAAA 1 cut(s) 1027
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 4 cut(s) 375, 879, 966, 990
EarI CTCTTC 4 cut(s) 375, 879, 966, 990
Eco130I CCWWGG 2 cut(s) 350, 1149
Eco147I AGGCCT 1 cut(s) 1191
Eco32I GATATC 1 cut(s) 473
Eco47I GGWCC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 1077
Eco91I GGTNACC 1 cut(s) 608
EcoO109I RGGNCCY 1 cut(s) 425
EcoO65I GGTNACC 1 cut(s) 608
EcoRI GAATTC 2 cut(s) 895, 1043
EcoRII CCWGG 1 cut(s) 866
EcoRV GATATC 1 cut(s) 473
EcoT14I CCWWGG 2 cut(s) 350, 1149
ErhI CCWWGG 2 cut(s) 350, 1149
FaeI CATG 4 cut(s) 299, 470, 781, 881
FalI AAGNNNNNCTT 4 cut(s) 348, 380, 720, 752
FaqI GGGAC 1 cut(s) 411
FatI CATG 4 cut(s) 295, 466, 777, 877
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 4 cut(s) 168, 219, 702, 1175
FokI GGATG 4 cut(s) 17, 449, 949, 1166
Fsp4HI GCNGC 4 cut(s) 168, 219, 702, 1175
FspBI CTAG 6 cut(s) 183, 210, 447, 675, 1193, 1230
GluI GCNGC 4 cut(s) 168, 219, 702, 1175
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 1 cut(s) 395
HaeIII GGCC 4 cut(s) 35, 349, 1148, 1191
HapII CCGG 2 cut(s) 22, 330
Hin1II CATG 4 cut(s) 299, 470, 781, 881
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 3 cut(s) 286, 395, 1226
HpaII CCGG 2 cut(s) 22, 330
HphI GGTGA 2 cut(s) 620, 925
Hpy188I TCNGA 5 cut(s) 228, 420, 477, 643, 796
HpyAV CCTTC 7 cut(s) 536, 865, 904, 913, 923, 956, 1209
HpyCH4III ACNGT 2 cut(s) 608, 1133
HpyCH4V TGCA 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 339
HpyF3I CTNAG 3 cut(s) 744, 752, 1292
Hsp92II CATG 4 cut(s) 299, 470, 781, 881
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 4 cut(s) 383, 600, 643, 811
LmnI GCTCC 3 cut(s) 181, 1018, 1238
Lsp1109I GCAGC 4 cut(s) 154, 205, 688, 1186
LweI GCATC 1 cut(s) 1072
MaeI CTAG 6 cut(s) 183, 210, 447, 675, 1193, 1230
MaeIII GTNAC 3 cut(s) 203, 608, 1133
MalI GATC 4 cut(s) 385, 602, 645, 813
MbiI CCGCTC 1 cut(s) 1021
MboI GATC 4 cut(s) 383, 600, 643, 811
MflI RGATCY 1 cut(s) 383
MhlI GDGCHC 1 cut(s) 635
MlsI TGGCCA 1 cut(s) 349
MluNI TGGCCA 1 cut(s) 349
MmeI TCCRAC 2 cut(s) 786, 914
Mox20I TGGCCA 1 cut(s) 349
MroNI GCCGGC 1 cut(s) 329
MscI TGGCCA 1 cut(s) 349
MseI TTAA 6 cut(s) 135, 656, 668, 708, 732, 1026
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 349
MspA1I CMGCKG 1 cut(s) 1177
MspI CCGG 2 cut(s) 22, 330
MspR9I CCNGG 1 cut(s) 868
MssI GTTTAAAC 1 cut(s) 1027
MvaI CCWGG 1 cut(s) 868
MwoI GCNNNNNNNGC 2 cut(s) 173, 339
NaeI GCCGGC 1 cut(s) 331
NdeII GATC 4 cut(s) 383, 600, 643, 811
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 4 cut(s) 299, 470, 781, 881
NlaIV GGNNCC 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 608
NspI RCATGY 1 cut(s) 881
PaeR7I CTCGAG 1 cut(s) 1077
PceI AGGCCT 1 cut(s) 1191
PciI ACATGT 1 cut(s) 877
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 3 cut(s) 286, 395, 1226
PkrI GCNGC 4 cut(s) 169, 220, 703, 1176
PmeI GTTTAAAC 1 cut(s) 1027
PpuMI RGGWCCY 1 cut(s) 425
PscI ACATGT 1 cut(s) 877
PshBI ATTAAT 1 cut(s) 708
PsiI TTATAA 2 cut(s) 99, 687
Psp5II RGGWCCY 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 866
PspEI GGTNACC 1 cut(s) 608
PspFI CCCAGC 1 cut(s) 551
PspGI CCWGG 1 cut(s) 866
PspN4I GGNNCC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 425
PspPPI RGGWCCY 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 1177
PsuI RGATCY 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 1177
RsaI GTAC 6 cut(s) 57, 81, 524, 619, 664, 1197
RsaNI GTAC 6 cut(s) 56, 80, 523, 618, 663, 1196
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 6 cut(s) 135, 656, 668, 708, 732, 1026
SatI GCNGC 4 cut(s) 168, 219, 702, 1175
Sau3AI GATC 4 cut(s) 383, 600, 643, 811
Sau96I GGNCC 1 cut(s) 425
ScaI AGTACT 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 868
SduI GDGCHC 1 cut(s) 635
SfaNI GCATC 1 cut(s) 1072
SfcI CTRYAG 3 cut(s) 120, 574, 1101
Sfr274I CTCGAG 1 cut(s) 1077
SinI GGWCC 1 cut(s) 425
SlaI CTCGAG 1 cut(s) 1077
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 37, 924, 1077
SmoI CTYRAG 3 cut(s) 37, 924, 1077
SpeI ACTAGT 1 cut(s) 209
SseBI AGGCCT 1 cut(s) 1191
SsiI CCGC 2 cut(s) 270, 1021
SspMI CTAG 6 cut(s) 183, 210, 447, 675, 1193, 1230
StuI AGGCCT 1 cut(s) 1191
StyD4I CCNGG 1 cut(s) 866
StyI CCWWGG 2 cut(s) 350, 1149
TaaI ACNGT 2 cut(s) 608, 1133
TaqI TCGA 2 cut(s) 393, 1078
TaqII GACCGA 1 cut(s) 627
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 3 cut(s) 286, 395, 1226
Tru1I TTAA 6 cut(s) 135, 656, 668, 708, 732, 1026
Tru9I TTAA 6 cut(s) 135, 656, 668, 708, 732, 1026
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 4 cut(s) 167, 218, 701, 1174
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 6 cut(s) 237, 299, 923, 932, 1056, 1232
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 425
VspI ATTAAT 1 cut(s) 708
XapI RAATTY 4 cut(s) 511, 820, 895, 1043
XceI RCATGY 1 cut(s) 881
XhoI CTCGAG 1 cut(s) 1077
XspI CTAG 6 cut(s) 183, 210, 447, 675, 1193, 1230
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.