MD07G1068800.v1.1
MYB Family

Trihelix transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
6496749 .. 6499661
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1068800.v1.1.491

Sequence Viewer

Length: 1701 bp
ATGGATGACTATGGACCTCCAGATCTCCGGCATCTGATGGCCTCAAAAACCCAGTTTTGTAAGCCCTTACAATTCCCAGAGCAATTTTCAGTACACCTCAATCTTACGCCTCCACCGCCACCGCCGCCCCATTATCATCACCACCCCATAGCGGTAGGCAGTGAGATTGTTGCAGCTGCTGGCTTGCTTGATCATCATCGTTATACTAGTATGATCACTACAACTGCTTGTCATCCTAGTATTACTATTAGTGGTAATGCTTCTGCTGCTGCTGCGATGTATGGGATAGAGTCGGAGCATGGATGGAATAATATTGATGGAGCAAATAATAATAATAGTAGATGGCCAAGACAAGAAACCCTTACTCTTTTGGAGATTAGATCTGCTCTTGATTCCAAGTTCAAGGAGACTAATCAGAAAGGACCCCTGTGGGATGAAGTCTCTAGGATAATGGCTGAGGAACATGGATTCCAGAGAACTGGGAAGAAATGCAAAGAAAAGTTTGAGAACTTGTACAAGTACTACAAGAAAACCAAGGAAGGGAAGTCTGGGAGGCAAGATGGGAAGCACTATAGGTTCTTTCGTCAGCTTGAAGCAATTTATGGAGATCATCATCAAAGTAGCAATCAGTCCTCCATTTACGGTAAATCAAACTCTCTTCTTTGTCACACTACTCCGAGTGGCAGTTTTGACCGAGATCAAAACCAAGAAGAAGTAGTTGTGCAAGACCAAAAGATTATAAGCTGCGAGAGCCTTAGTTCCAATAACTCAACTGAATTTGATCAAACCCCACCCTCGGAGAACAACGACGACAATGAGTCACTTTCAGCTATTGGTTATTTCATGATGAATCAGTCAATGGAGAGCCTTAAGAATGAGAATAAAAGTTATGCGACCCAGGTAAAGAAGAAATGGAAAGCAAAGGTGGAGGAGTTTGTGAGTTCACAAATGGGGAAGGTAATGAAGACCCAGGAGGCATTGATGGAGAAGATGGTAAAGAGTATTGAAGATAGTGCGGATGAGAGGATAGCTAAGGAAGAAGAATGGAGGAAGCAAGAGGCGGCCAAGTATGAGCGAGAAGTGCACGAGTTTTGGGCTAAGGAGAGAGCATGGGTTGAAACTCGAGATGCGGCGATAATGGAGGCTCTAAGCAAATATACAGGCCAAGGAGCTTACAACAACAATGGCAAGGACGATATTGCAAAAGAAACTGGTAATGATAACAGGAAGAATTATCCTAGATGGACTGAACATGAAGTTGCAAGTTTAATACAGCTGAGGACTAGCTCGGAACTCACATTCCAAGAAAGTGAGTATCTGAAGGAGGGGGGAGTGTGGGAGGAGATAGCTGCAAAAATGGGTAGTTTGGGCTACACAAGGAGTGGAGGGGAGTGTAAAGAGAAATGGGAGAATATAAGCATTTGTTTTAGAATGACAACAGAATGGAACAAGATGCACAAACAAGAAACGAAGACTAATAACATGTACTTTAGTCAGATGTCTTGTTATGAAGAAGGCCCGGAAGTTTGGAATCAAAGGCAGGATGGGATGGGAGTTCAACTAATGGATGAGGGAGTTTCACCATCGTGTTCTAATATGGATGTGAACTCTAGCTCATTGCACATTCCATTTAATGGAGGAGAAAACCTGTGGGACGAGAGATACTCTCATGTAACCAACTCACCGCGTGACAACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

567

Amino Acids

64.78

Weight (kDa)

5.69

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 113 - 200 5.7e-22 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_4 PF13837 414 - 500 4.2e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 740
AccB7I CCANNNNNTGG 1 cut(s) 1634
AccII CGCG 1 cut(s) 1687
AciI CCGC 8 cut(s) 116, 122, 125, 152, 1016, 1061, 1130, 1685
AcoI YGGCCR 2 cut(s) 344, 1062
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 1 cut(s) 1340
AdeI CACNNNGTG 1 cut(s) 1688
AfaI GTAC 4 cut(s) 93, 515, 521, 1487
AfiI CCNNNNNNNGG 4 cut(s) 151, 540, 796, 1634
AflII CTTAAG 1 cut(s) 869
AflIII ACRYGT 1 cut(s) 1482
AgsI TTSAA 5 cut(s) 403, 593, 1007, 1118, 1559
AhdI GACNNNNNGTC 1 cut(s) 817
AhlI ACTAGT 1 cut(s) 206
AjnI CCWGG 2 cut(s) 897, 969
AleI CACNNNNGTG 1 cut(s) 1585
AloI GAACNNNNNNTCC 4 cut(s) 453, 485, 1284, 1316
Alw21I GWGCWC 1 cut(s) 1086
Alw26I GTCTC 2 cut(s) 401, 445
Alw44I GTGCAC 1 cut(s) 1082
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 1122
AoxI GGCC 5 cut(s) 39, 344, 1062, 1162, 1516
ApaLI GTGCAC 1 cut(s) 1082
ApeKI GCWGC 7 cut(s) 173, 176, 266, 269, 272, 744, 1349
ApoI RAATTY 1 cut(s) 776
AspS9I GGNCC 3 cut(s) 14, 422, 1517
AsuC2I CCSGG 1 cut(s) 1520
AsuHPI GGTGA 3 cut(s) 131, 1572, 1674
AvaI CYCGRG 1 cut(s) 1122
AvaII GGWCC 2 cut(s) 14, 422
BaeGI GKGCMC 1 cut(s) 1086
BalI TGGCCA 1 cut(s) 346
BauI CACGAG 1 cut(s) 1085
BbsI GAAGAC 2 cut(s) 971, 1478
Bbv12I GWGCWC 1 cut(s) 1086
BbvCI CCTCAGC 2 cut(s) 456, 1277
BbvI GCAGC 7 cut(s) 163, 185, 253, 256, 259, 731, 1336
BciT130I CCWGG 2 cut(s) 899, 971
BclI TGATCA 3 cut(s) 190, 213, 781
BcnI CCSGG 1 cut(s) 1520
BcoDI GTCTC 2 cut(s) 401, 445
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 6 cut(s) 207, 237, 444, 1239, 1284, 1611
BfmI CTRYAG 1 cut(s) 571
BfrI CTTAAG 1 cut(s) 869
BglII AGATCT 2 cut(s) 22, 380
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 3 cut(s) 899, 971, 1520
Bme18I GGWCC 2 cut(s) 14, 422
BmeRI GACNNNNNGTC 1 cut(s) 817
BmeT110I CYCGRG 1 cut(s) 1122
BmgT120I GGNCC 3 cut(s) 14, 422, 1517
BmiI GGNNCC 1 cut(s) 424
BmrFI CCNGG 3 cut(s) 899, 971, 1520
BmrI ACTGGG 2 cut(s) 46, 489
BmsI GCATC 3 cut(s) 40, 1117, 1443
BmuI ACTGGG 2 cut(s) 46, 489
BpiI GAAGAC 2 cut(s) 971, 1478
BplI GAGNNNNNCTC 4 cut(s) 1649, 1681, 1651, 1683
Bpu10I CCTNAGC 4 cut(s) 456, 1032, 1098, 1277
BpuMI CCSGG 1 cut(s) 1520
BsaBI GATNNNNATC 2 cut(s) 195, 612
BsaJI CCNNGG 5 cut(s) 534, 795, 897, 969, 1165
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 540, 796, 1634
Bse1I ACTGG 3 cut(s) 52, 484, 1216
Bse3DI GCAATG 1 cut(s) 1616
Bse8I GATNNNNATC 2 cut(s) 195, 612
BseBI CCWGG 2 cut(s) 899, 971
BseDI CCNNGG 5 cut(s) 534, 795, 897, 969, 1165
BseGI GGATG 9 cut(s) 10, 232, 308, 439, 1024, 1549, 1554, 1573, 1606
BseJI GATNNNNATC 2 cut(s) 195, 612
BseLI CCNNNNNNNGG 4 cut(s) 151, 540, 796, 1634
BseMI GCAATG 1 cut(s) 1616
BseMII CTCAG 2 cut(s) 447, 1268
BseNI ACTGG 3 cut(s) 52, 484, 1216
BseRI GAGGAG 3 cut(s) 944, 1355, 1653
BseSI GKGCMC 1 cut(s) 1086
BseXI GCAGC 7 cut(s) 163, 185, 253, 256, 259, 731, 1336
Bsh1236I CGCG 1 cut(s) 1687
BshFI GGCC 5 cut(s) 41, 346, 1064, 1164, 1518
BsiHKAI GWGCWC 1 cut(s) 1086
BsiHKCI CYCGRG 1 cut(s) 1122
BsiSI CCGG 2 cut(s) 28, 1520
BslFI GGGAC 1 cut(s) 1667
BslI CCNNNNNNNGG 4 cut(s) 151, 540, 796, 1634
BsmAI GTCTC 2 cut(s) 401, 445
BsmFI GGGAC 1 cut(s) 1667
BsnI GGCC 5 cut(s) 41, 346, 1064, 1164, 1518
BsoBI CYCGRG 1 cut(s) 1122
Bsp1286I GDGCHC 1 cut(s) 1086
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 7 cut(s) 22, 190, 213, 380, 607, 697, 781
BspACI CCGC 8 cut(s) 116, 122, 125, 152, 1016, 1061, 1130, 1685
BspANI GGCC 5 cut(s) 41, 346, 1064, 1164, 1518
BspCNI CTCAG 2 cut(s) 448, 1269
BspFNI CGCG 1 cut(s) 1687
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 1 cut(s) 424
BspTI CTTAAG 1 cut(s) 869
BsrDI GCAATG 1 cut(s) 1616
BsrGI TGTACA 1 cut(s) 513
BsrI ACTGG 3 cut(s) 52, 484, 1216
BssECI CCNNGG 5 cut(s) 534, 795, 897, 969, 1165
BssMI GATC 7 cut(s) 22, 190, 213, 380, 607, 697, 781
BssSI CACGAG 1 cut(s) 1085
BssT1I CCWWGG 2 cut(s) 534, 1165
Bst2BI CACGAG 1 cut(s) 1085
Bst2UI CCWGG 2 cut(s) 899, 971
Bst4CI ACNGT 2 cut(s) 644, 1697
Bst6I CTCTTC 1 cut(s) 663
BstAFI CTTAAG 1 cut(s) 869
BstAUI TGTACA 1 cut(s) 513
BstC8I GCNNGC 2 cut(s) 181, 185
BstDEI CTNAG 6 cut(s) 456, 755, 1032, 1098, 1148, 1277
BstF5I GGATG 9 cut(s) 10, 232, 308, 439, 1024, 1549, 1554, 1573, 1606
BstFNI CGCG 1 cut(s) 1687
BstKTI GATC 7 cut(s) 25, 193, 216, 383, 610, 700, 784
BstMAI GTCTC 2 cut(s) 401, 445
BstMBI GATC 7 cut(s) 22, 190, 213, 380, 607, 697, 781
BstMWI GCNNNNNNNGC 6 cut(s) 115, 124, 266, 272, 750, 1081
BstNI CCWGG 2 cut(s) 899, 971
BstNSI RCATGY 1 cut(s) 1486
BstSCI CCNGG 3 cut(s) 897, 969, 1518
BstSFI CTRYAG 1 cut(s) 571
BstSLI GKGCMC 1 cut(s) 1086
BstUI CGCG 1 cut(s) 1687
BstV1I GCAGC 7 cut(s) 163, 185, 253, 256, 259, 731, 1336
BstV2I GAAGAC 2 cut(s) 971, 1478
BstX2I RGATCY 2 cut(s) 22, 380
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 2 cut(s) 22, 380
BsuRI GGCC 5 cut(s) 41, 346, 1064, 1164, 1518
BtgZI GCGATG 1 cut(s) 290
BtsCI GGATG 9 cut(s) 10, 232, 308, 439, 1024, 1549, 1554, 1573, 1606
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 181, 185
CaiI CAGNNNCTG 1 cut(s) 179
CciI TCATGA 1 cut(s) 843
Cfr13I GGNCC 3 cut(s) 14, 422, 1517
Csp6I GTAC 4 cut(s) 92, 514, 520, 1486
CviAII CATG 7 cut(s) 299, 464, 844, 1110, 1253, 1483, 1670
CviQI GTAC 4 cut(s) 92, 514, 520, 1486
DdeI CTNAG 6 cut(s) 456, 755, 1032, 1098, 1148, 1277
DpnI GATC 7 cut(s) 24, 192, 215, 382, 609, 699, 783
DpnII GATC 7 cut(s) 22, 190, 213, 380, 607, 697, 781
DraIII CACNNNGTG 1 cut(s) 1688
DriI GACNNNNNGTC 1 cut(s) 817
EaeI YGGCCR 2 cut(s) 344, 1062
Eam1104I CTCTTC 1 cut(s) 663
Eam1105I GACNNNNNGTC 1 cut(s) 817
EarI CTCTTC 1 cut(s) 663
Eco130I CCWWGG 2 cut(s) 534, 1165
Eco47I GGWCC 2 cut(s) 14, 422
Eco57I CTGAAG 1 cut(s) 1340
Eco88I CYCGRG 1 cut(s) 1122
EcoO109I RGGNCCY 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 897, 969
EcoT14I CCWWGG 2 cut(s) 534, 1165
ErhI CCWWGG 2 cut(s) 534, 1165
FaeI CATG 7 cut(s) 302, 467, 847, 1113, 1256, 1486, 1673
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 1 cut(s) 1667
FatI CATG 7 cut(s) 298, 463, 843, 1109, 1252, 1482, 1669
FbaI TGATCA 3 cut(s) 190, 213, 781
FokI GGATG 9 cut(s) 17, 219, 315, 446, 1031, 1556, 1561, 1580, 1613
FspBI CTAG 6 cut(s) 207, 237, 444, 1239, 1284, 1611
HaeIII GGCC 5 cut(s) 41, 346, 1064, 1164, 1518
HapII CCGG 2 cut(s) 28, 1520
Hin1II CATG 7 cut(s) 302, 467, 847, 1113, 1256, 1486, 1673
HinfI GANTC 6 cut(s) 290, 392, 468, 818, 850, 1531
HpaII CCGG 2 cut(s) 28, 1520
HphI GGTGA 3 cut(s) 131, 1572, 1674
Hpy166II GTNNAC 4 cut(s) 94, 944, 1084, 1606
Hpy188I TCNGA 8 cut(s) 36, 295, 417, 678, 799, 1291, 1320, 1497
Hpy188III TCNNGA 5 cut(s) 20, 389, 472, 844, 1124
Hpy8I GTNNAC 4 cut(s) 94, 944, 1084, 1606
Hpy99I CGWCG 1 cut(s) 812
HpyAV CCTTC 4 cut(s) 533, 949, 1315, 1508
HpyCH4III ACNGT 2 cut(s) 644, 1697
HpyCH4V TGCA 9 cut(s) 173, 492, 724, 1084, 1202, 1262, 1352, 1456, 1621
HpyF10VI GCNNNNNNNGC 6 cut(s) 115, 124, 266, 272, 750, 1081
HpyF3I CTNAG 6 cut(s) 456, 755, 1032, 1098, 1148, 1277
Hsp92II CATG 7 cut(s) 302, 467, 847, 1113, 1256, 1486, 1673
Ksp22I TGATCA 3 cut(s) 190, 213, 781
Kzo9I GATC 7 cut(s) 22, 190, 213, 380, 607, 697, 781
LmnI GCTCC 3 cut(s) 295, 320, 1169
Lsp1109I GCAGC 7 cut(s) 163, 185, 253, 256, 259, 731, 1336
LweI GCATC 3 cut(s) 40, 1117, 1443
MaeI CTAG 6 cut(s) 207, 237, 444, 1239, 1284, 1611
MaeIII GTNAC 4 cut(s) 665, 819, 1672, 1688
MalI GATC 7 cut(s) 24, 192, 215, 382, 609, 699, 783
MboI GATC 7 cut(s) 22, 190, 213, 380, 607, 697, 781
MflI RGATCY 2 cut(s) 22, 380
MhlI GDGCHC 1 cut(s) 1086
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 5 cut(s) 71, 83, 597, 776, 1231
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 2 cut(s) 299, 827
MmeI TCCRAC 1 cut(s) 273
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 4 cut(s) 870, 1268, 1632, 1699
MslI CAYNNNNRTG 1 cut(s) 1585
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 2 cut(s) 176, 1276
MspCI CTTAAG 1 cut(s) 869
MspI CCGG 2 cut(s) 28, 1520
MspR9I CCNGG 3 cut(s) 899, 971, 1520
MvaI CCWGG 2 cut(s) 899, 971
MvnI CGCG 1 cut(s) 1687
MwoI GCNNNNNNNGC 6 cut(s) 115, 124, 266, 272, 750, 1081
NciI CCSGG 1 cut(s) 1520
NdeII GATC 7 cut(s) 22, 190, 213, 380, 607, 697, 781
NlaIII CATG 7 cut(s) 302, 467, 847, 1113, 1256, 1486, 1673
NlaIV GGNNCC 1 cut(s) 424
NmuCI GTSAC 3 cut(s) 665, 819, 1688
NspI RCATGY 1 cut(s) 1486
OliI CACNNNNGTG 1 cut(s) 1585
PaeR7I CTCGAG 1 cut(s) 1122
PagI TCATGA 1 cut(s) 843
PciI ACATGT 1 cut(s) 1482
PfeI GAWTC 4 cut(s) 392, 468, 850, 1531
PflMI CCANNNNNTGG 1 cut(s) 1634
PleI GAGTC 2 cut(s) 298, 826
PpsI GAGTC 2 cut(s) 298, 826
PpuMI RGGWCCY 1 cut(s) 422
PscI ACATGT 1 cut(s) 1482
PsiI TTATAA 1 cut(s) 740
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 897, 969
PspGI CCWGG 2 cut(s) 897, 969
PspN4I GGNNCC 1 cut(s) 424
PspPI GGNCC 3 cut(s) 14, 422, 1517
PspPPI RGGWCCY 1 cut(s) 422
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 2 cut(s) 22, 380
PvuII CAGCTG 2 cut(s) 176, 1276
RsaI GTAC 4 cut(s) 93, 515, 521, 1487
RsaNI GTAC 4 cut(s) 92, 514, 520, 1486
RseI CAYNNNNRTG 1 cut(s) 1585
SaqAI TTAA 4 cut(s) 870, 1268, 1632, 1699
Sau3AI GATC 7 cut(s) 22, 190, 213, 380, 607, 697, 781
Sau96I GGNCC 3 cut(s) 14, 422, 1517
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 2 cut(s) 299, 827
ScrFI CCNGG 3 cut(s) 899, 971, 1520
SduI GDGCHC 1 cut(s) 1086
SfaNI GCATC 3 cut(s) 40, 1117, 1443
SfcI CTRYAG 1 cut(s) 571
Sfr274I CTCGAG 1 cut(s) 1122
SinI GGWCC 2 cut(s) 14, 422
SlaI CTCGAG 1 cut(s) 1122
SmiMI CAYNNNNRTG 1 cut(s) 1585
SmlI CTYRAG 2 cut(s) 869, 1122
SmoI CTYRAG 2 cut(s) 869, 1122
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 5 cut(s) 71, 83, 597, 776, 1231
SsiI CCGC 8 cut(s) 116, 122, 125, 152, 1016, 1061, 1130, 1685
SspI AATATT 1 cut(s) 313
SspMI CTAG 6 cut(s) 207, 237, 444, 1239, 1284, 1611
StyD4I CCNGG 3 cut(s) 897, 969, 1518
StyI CCWWGG 2 cut(s) 534, 1165
TaaI ACNGT 2 cut(s) 644, 1697
TaqI TCGA 1 cut(s) 1123
TaqII GACCGA 1 cut(s) 708
TasI AATT 5 cut(s) 71, 83, 597, 776, 1231
TatI WGTACW 4 cut(s) 91, 513, 519, 1485
TauI GCSGC 3 cut(s) 127, 1064, 1133
TfiI GAWTC 4 cut(s) 392, 468, 850, 1531
Tru1I TTAA 4 cut(s) 870, 1268, 1632, 1699
Tru9I TTAA 4 cut(s) 870, 1268, 1632, 1699
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 3 cut(s) 665, 819, 1688
TseI GCWGC 7 cut(s) 173, 176, 266, 269, 272, 744, 1349
Tsp45I GTSAC 3 cut(s) 665, 819, 1688
TspDTI ATGAA 6 cut(s) 450, 832, 863, 977, 1269, 1524
TspRI CASTG 1 cut(s) 166
Van91I CCANNNNNTGG 1 cut(s) 1634
Vha464I CTTAAG 1 cut(s) 869
VneI GTGCAC 1 cut(s) 1082
VpaK11BI GGWCC 2 cut(s) 14, 422
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 1486
XhoI CTCGAG 1 cut(s) 1122
XspI CTAG 6 cut(s) 207, 237, 444, 1239, 1284, 1611
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.