Rw1G010840
MYB Family

Trihelix transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002927
Physical Location & Seq
Reverse (-)
24553507 .. 24555460
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010840.1

Sequence Viewer

Length: 1314 bp
ATGGATGATTATCCAGACCTCCGGCAGCTGATGGCCTCAAGAACACAGCAGCTCGTACAATTCCCAGACCCGTTTTCAGTACGACCTTACAATAATTTTCACCCCAATAGTATCGTTGTAGGTCATGAGGTTAATGCTCATGAATTTTTTGAGTTTGGTTCTTCTGCTTCTGCTGCTGGTGCTCCTCCTAATTTTAGTACACTTATTAGTAATAGTAGTGTTGCTGGTAATCTGAATGGTTCTACTGCTGCTTCATCTGTTGGTTCGTTGTATGGGTTAGAGTTAATGAATCAGCATGCGTGGAGTATTAATGGGAATGATGGATCAGGCAATAACAGCAGATGGCCAAGACAAGAAACTCTTACTCTTCTTGAGATTAGATCCAGTCTCGATTCCAAGTTCAAGGAGACTAATCAGAAAGGTCCATTGTGGGATGAAGTTTCCAGGATAATGAGTGAGGATCATGGATATCACAGGAGTGGGAAGAAATGCAAAGAAAAGTTTGAGAATCTATACAAGTACTACAAGAAAACCAAAGAAGGCAAAGCTGGGAGACAAGATGGGAAGCACTATAGGTTCTTTCGTCAGCTTGAAGCAATATATGGTGACCAAAGTACTACCAATCCCTTGTCCTCAGCTTCGGATCAAACCCATCTAACGGGTACATTAAACCCTACTCTTCTTTATAATCACGCCACTGCTACTATTAACCAAGAAAATCAAGAAGTTAAGCTTGGTGCGGAGAGCCTTAGTTTCTCCAACAATTCAACTGACTTAGAAACCTCCAGCTCGGAGAACAATGGAGATGATCTTTCAAATTCAGCTAATGATCACTCTAAAAATGAGAACAAAATTAGGTGTTCAAGGCGTATGAAGAAGACCTGGAAGACACAGGTGGAGGAGTTTGTGAATTCCCAAATGATGAAGGTGATGAAGGCTCAAGAGGGTTGGATGGAGAAGATGTTGAAGACTATTGAAGGTAGAGAAGAGGAGAGGTTGGCTAAAGAAGAAGAGTGGAGGAAGCGCGAGGTAGAGCGGTTTAATCAACAAGTACATGAATTCTGGGCTAACGAGAGAGCTTGGGTGGAGAATCGAGATGCTTCAATAATGGAGGCTCTCAGCCAAATTCGAGGAATAGGAACTAACAGTTACAACACCAAGGCCAAGGACGAGAGCATGGGACTGCAGCTGACGGATGGAGGTCTATTATCTTCAAGTTCTAATTATATGAATATGAACTCTACCTCCTTTTACATTCCGACGAATGAAGGAGAAAATTTGTGGAACAGGTATGGTGGGAAGCTCAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

437

Amino Acids

49.58

Weight (kDa)

6.18

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 113 - 200 1.5e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
AccBSI CCGCTC 1 cut(s) 1036
AccII CGCG 1 cut(s) 1026
AciI CCGC 2 cut(s) 740, 1036
AclWI GGATC 4 cut(s) 331, 375, 468, 651
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 6 cut(s) 143, 817, 910, 1058, 1125, 1276
AfaI GTAC 7 cut(s) 57, 81, 199, 521, 616, 664, 1053
AfiI CCNNNNNNNGG 1 cut(s) 658
AgsI TTSAA 9 cut(s) 403, 593, 768, 816, 864, 967, 977, 1104, 1215
AjnI CCWGG 2 cut(s) 443, 881
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AleI CACNNNNGTG 1 cut(s) 477
AloI GAACNNNNNNTCC 2 cut(s) 1229, 1261
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 3 cut(s) 392, 401, 547
AlwI GGATC 4 cut(s) 331, 375, 468, 651
AoxI GGCC 3 cut(s) 33, 344, 1161
ApeKI GCWGC 5 cut(s) 25, 49, 173, 248, 1186
ApoI RAATTY 6 cut(s) 143, 817, 910, 1058, 1125, 1276
AseI ATTAAT 1 cut(s) 309
AspLEI GCGC 1 cut(s) 1026
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 3 cut(s) 92, 617, 940
AvaII GGWCC 1 cut(s) 422
BalI TGGCCA 1 cut(s) 346
BbsI GAAGAC 3 cut(s) 884, 893, 974
Bbv12I GWGCWC 1 cut(s) 184
BbvCI CCTCAGC 1 cut(s) 634
BbvI GCAGC 5 cut(s) 37, 61, 160, 235, 1198
BccI CCATC 7 cut(s) 25, 314, 336, 554, 660, 946, 1190
BciT130I CCWGG 2 cut(s) 445, 883
BclI TGATCA 1 cut(s) 829
BcoDI GTCTC 3 cut(s) 392, 401, 547
BfmI CTRYAG 2 cut(s) 571, 1184
BisI GCNGC 5 cut(s) 26, 50, 174, 249, 1187
BlpI GCTNAGC 1 cut(s) 1304
BlsI GCNGC 5 cut(s) 27, 51, 175, 250, 1188
BmcAI AGTACT 2 cut(s) 521, 616
Bme1390I CCNGG 2 cut(s) 445, 883
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 422
BmrFI CCNGG 2 cut(s) 445, 883
BmsI GCATC 1 cut(s) 1087
BpiI GAAGAC 3 cut(s) 884, 893, 974
BpmI CTGGAG 1 cut(s) 769
Bpu10I CCTNAGC 1 cut(s) 634
Bpu1102I GCTNAGC 1 cut(s) 1304
BpuEI CTTGAG 3 cut(s) 22, 392, 924
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 1158, 1164
BsaXI ACNNNNNCTCC 4 cut(s) 947, 977, 1229, 1259
Bsc4I CCNNNNNNNGG 1 cut(s) 658
Bse1I ACTGG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 2 cut(s) 445, 883
BseDI CCNNGG 2 cut(s) 1158, 1164
BseGI GGATG 4 cut(s) 10, 439, 957, 1201
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 658
BseMII CTCAG 2 cut(s) 648, 1132
BseNI ACTGG 1 cut(s) 384
BseRI GAGGAG 3 cut(s) 174, 914, 1004
BseXI GCAGC 5 cut(s) 37, 61, 160, 235, 1198
BseYI CCCAGC 1 cut(s) 548
Bsh1236I CGCG 1 cut(s) 1026
BshFI GGCC 3 cut(s) 35, 346, 1163
BsiHKAI GWGCWC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 1194
BslI CCNNNNNNNGG 1 cut(s) 658
BsmAI GTCTC 3 cut(s) 392, 401, 547
BsmFI GGGAC 1 cut(s) 1194
BsnI GGCC 3 cut(s) 35, 346, 1163
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 6 cut(s) 323, 380, 460, 643, 808, 829
Bsp1720I GCTNAGC 1 cut(s) 1304
BspACI CCGC 2 cut(s) 740, 1036
BspANI GGCC 3 cut(s) 35, 346, 1163
BspCNI CTCAG 2 cut(s) 647, 1131
BspFNI CGCG 1 cut(s) 1026
BspHI TCATGA 2 cut(s) 124, 139
BspMAI CTGCAG 1 cut(s) 1188
BspPI GGATC 4 cut(s) 331, 375, 468, 651
BsrBI CCGCTC 1 cut(s) 1036
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 2 cut(s) 1158, 1164
BssMI GATC 6 cut(s) 323, 380, 460, 643, 808, 829
BssT1I CCWWGG 2 cut(s) 1158, 1164
Bst2UI CCWGG 2 cut(s) 445, 883
Bst4CI ACNGT 1 cut(s) 1148
Bst6I CTCTTC 4 cut(s) 372, 684, 981, 1005
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 5 cut(s) 634, 749, 775, 1118, 1304
BstEII GGTNACC 1 cut(s) 605
BstF5I GGATG 4 cut(s) 10, 439, 957, 1201
BstFNI CGCG 1 cut(s) 1026
BstHHI GCGC 1 cut(s) 1026
BstKTI GATC 6 cut(s) 326, 383, 463, 646, 811, 832
BstMAI GTCTC 3 cut(s) 392, 401, 547
BstMBI GATC 6 cut(s) 323, 380, 460, 643, 808, 829
BstMWI GCNNNNNNNGC 3 cut(s) 173, 179, 336
BstNI CCWGG 2 cut(s) 445, 883
BstNSI RCATGY 1 cut(s) 299
BstPI GGTNACC 1 cut(s) 605
BstSCI CCNGG 2 cut(s) 443, 881
BstSFI CTRYAG 2 cut(s) 571, 1184
BstUI CGCG 1 cut(s) 1026
BstV1I GCAGC 5 cut(s) 37, 61, 160, 235, 1198
BstV2I GAAGAC 3 cut(s) 884, 893, 974
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BsuRI GGCC 3 cut(s) 35, 346, 1163
BtsCI GGATG 4 cut(s) 10, 439, 957, 1201
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 297
CciI TCATGA 2 cut(s) 124, 139
CfoI GCGC 1 cut(s) 1026
Cfr13I GGNCC 1 cut(s) 422
Csp6I GTAC 7 cut(s) 56, 80, 198, 520, 615, 663, 1052
CviAII CATG 6 cut(s) 125, 140, 296, 464, 1055, 1177
CviQI GTAC 7 cut(s) 56, 80, 198, 520, 615, 663, 1052
DdeI CTNAG 5 cut(s) 634, 749, 775, 1118, 1304
DpnI GATC 6 cut(s) 325, 382, 462, 645, 810, 831
DpnII GATC 6 cut(s) 323, 380, 460, 643, 808, 829
EaeI YGGCCR 1 cut(s) 344
Eam1104I CTCTTC 4 cut(s) 372, 684, 981, 1005
EarI CTCTTC 4 cut(s) 372, 684, 981, 1005
Eco130I CCWWGG 2 cut(s) 1158, 1164
Eco32I GATATC 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 422
Eco91I GGTNACC 1 cut(s) 605
EcoO65I GGTNACC 1 cut(s) 605
EcoRI GAATTC 2 cut(s) 910, 1058
EcoRII CCWGG 2 cut(s) 443, 881
EcoRV GATATC 1 cut(s) 470
EcoT14I CCWWGG 2 cut(s) 1158, 1164
ErhI CCWWGG 2 cut(s) 1158, 1164
FaeI CATG 6 cut(s) 128, 143, 299, 467, 1058, 1180
FalI AAGNNNNNCTT 4 cut(s) 345, 377, 717, 749
FaqI GGGAC 1 cut(s) 1194
FatI CATG 6 cut(s) 124, 139, 295, 463, 1054, 1176
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 5 cut(s) 26, 50, 174, 249, 1187
FokI GGATG 4 cut(s) 17, 446, 964, 1208
Fsp4HI GCNGC 5 cut(s) 26, 50, 174, 249, 1187
GlaI GCGC 1 cut(s) 1025
GluI GCNGC 5 cut(s) 26, 50, 174, 249, 1187
GsaI CCCAGC 1 cut(s) 552
GsuI CTGGAG 1 cut(s) 769
HaeIII GGCC 3 cut(s) 35, 346, 1163
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 1026
Hin1II CATG 6 cut(s) 128, 143, 299, 467, 1058, 1180
Hin6I GCGC 1 cut(s) 1024
HinP1I GCGC 1 cut(s) 1024
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 4 cut(s) 289, 392, 508, 1090
HpaII CCGG 1 cut(s) 22
HphI GGTGA 3 cut(s) 92, 617, 940
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 5 cut(s) 234, 417, 643, 793, 1260
Hpy188III TCNNGA 9 cut(s) 14, 39, 125, 140, 371, 389, 722, 941, 1094
Hpy8I GTNNAC 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 1264
HpyAV CCTTC 5 cut(s) 533, 919, 928, 971, 1262
HpyCH4III ACNGT 1 cut(s) 1148
HpyCH4V TGCA 2 cut(s) 492, 1186
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 179, 336
HpyF3I CTNAG 5 cut(s) 634, 749, 775, 1118, 1304
Hsp92II CATG 6 cut(s) 128, 143, 299, 467, 1058, 1180
HspAI GCGC 1 cut(s) 1024
Ksp22I TGATCA 1 cut(s) 829
Kzo9I GATC 6 cut(s) 323, 380, 460, 643, 808, 829
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 5 cut(s) 37, 61, 160, 235, 1198
LweI GCATC 1 cut(s) 1087
MaeIII GTNAC 2 cut(s) 605, 1148
MalI GATC 6 cut(s) 325, 382, 462, 645, 810, 831
MbiI CCGCTC 1 cut(s) 1036
MboI GATC 6 cut(s) 323, 380, 460, 643, 808, 829
MflI RGATCY 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 346
MluNI TGGCCA 1 cut(s) 346
MmeI TCCRAC 3 cut(s) 783, 929, 1283
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 7 cut(s) 132, 284, 309, 668, 708, 729, 1041
MslI CAYNNNNRTG 1 cut(s) 477
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 2 cut(s) 28, 1189
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 2 cut(s) 445, 883
MvaI CCWGG 2 cut(s) 445, 883
MvnI CGCG 1 cut(s) 1026
MwoI GCNNNNNNNGC 3 cut(s) 173, 179, 336
NdeII GATC 6 cut(s) 323, 380, 460, 643, 808, 829
NlaIII CATG 6 cut(s) 128, 143, 299, 467, 1058, 1180
NmuCI GTSAC 1 cut(s) 605
NspI RCATGY 1 cut(s) 299
OliI CACNNNNGTG 1 cut(s) 477
PaeI GCATGC 1 cut(s) 299
PagI TCATGA 2 cut(s) 124, 139
PfeI GAWTC 4 cut(s) 289, 392, 508, 1090
PfoI TCCNGGA 1 cut(s) 443
PkrI GCNGC 5 cut(s) 27, 51, 175, 250, 1188
PshBI ATTAAT 1 cut(s) 309
PsiI TTATAA 1 cut(s) 687
Psp6I CCWGG 2 cut(s) 443, 881
PspEI GGTNACC 1 cut(s) 605
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 2 cut(s) 443, 881
PspPI GGNCC 1 cut(s) 422
PstI CTGCAG 1 cut(s) 1188
PsuI RGATCY 1 cut(s) 380
PvuII CAGCTG 2 cut(s) 28, 1189
RsaI GTAC 7 cut(s) 57, 81, 199, 521, 616, 664, 1053
RsaNI GTAC 7 cut(s) 56, 80, 198, 520, 615, 663, 1052
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 7 cut(s) 132, 284, 309, 668, 708, 729, 1041
SatI GCNGC 5 cut(s) 26, 50, 174, 249, 1187
Sau3AI GATC 6 cut(s) 323, 380, 460, 643, 808, 829
Sau96I GGNCC 1 cut(s) 422
ScaI AGTACT 2 cut(s) 521, 616
ScrFI CCNGG 2 cut(s) 445, 883
SduI GDGCHC 1 cut(s) 184
SfaNI GCATC 1 cut(s) 1087
SfcI CTRYAG 2 cut(s) 571, 1184
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 3 cut(s) 37, 371, 939
SmoI CTYRAG 3 cut(s) 37, 371, 939
SphI GCATGC 1 cut(s) 299
SsiI CCGC 2 cut(s) 740, 1036
StyD4I CCNGG 2 cut(s) 443, 881
StyI CCWWGG 2 cut(s) 1158, 1164
TaaI ACNGT 1 cut(s) 1148
TaqI TCGA 3 cut(s) 390, 1093, 1129
TatI WGTACW 4 cut(s) 197, 519, 614, 1051
TfiI GAWTC 4 cut(s) 289, 392, 508, 1090
Tru1I TTAA 7 cut(s) 132, 284, 309, 668, 708, 729, 1041
Tru9I TTAA 7 cut(s) 132, 284, 309, 668, 708, 729, 1041
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 1 cut(s) 605
TseI GCWGC 5 cut(s) 25, 49, 173, 248, 1186
Tsp45I GTSAC 1 cut(s) 605
TspGWI ACGGA 1 cut(s) 1208
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 422
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 6 cut(s) 143, 817, 910, 1058, 1125, 1276
XceI RCATGY 1 cut(s) 299
ZrmI AGTACT 2 cut(s) 521, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.