AT3G11150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005293
Physical Location & Seq
Reverse (-)
3492804 .. 3494653
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11150.2

Sequence Viewer

Length: 1116 bp
ATGGCTTTCTCTTCAGCTCACCTCAACCACCACCAACCTTTGATCAAGCACGGTGGAGCCACGGCGGCGCCTCCTCCGACCCCGTCATGCTCACATCTCAACACCACCAGCAAATCGGAGACAGCAGTTGACGCTCTCTCCAGTCTTTTCCACCGTCTCCCTCCTTTGCTTTCACTCCCCAACCGTCGCTCCATCCCTTCTCTTCCGATGGTATCTCTCTCCGCCGGAGATAGACTTGAATGGGACGATCTTATCTCCGCCGTGACTGATTTCGGCTATTTCCAACTCATTAACGATGACTCCGATATTCTTTTCCCTCCTGGGATCGCTGAAGCAGCCGAGTCTGACTCACTCTCGCTCTTAGAGCTCAGTGAAGAGAAGAAGGAATCATCGTTTCCGAAGAAATGGCCGCTAGGCTACGAAGCCGATGCTGAAACGCCATCGTTTTGCCTTGACGCCGACTGTTCAACCGACTCGAGCGAGTTAAATCTGAGTTCGCTCCGTGAGTTCACTCGGACTCTAGAGAAAGTTGGACTGAAGACGGTAGAGATGCTGGCGAATGCACTTGGGTTTGGATATGATTCAACCCGGTTTAATACTCTGATGTGGGTTAACCAAGGTGTTCCTGATGATGAACCGGAGGTAACCAACGGATTTTATCCTTTTGTTGTTTGTTTACAGTATCAGATAAGGGAACAGAAGTATTGTTTGCTAACCGAGTCTGGTTGGGTGTCCGTTTTACCCCGAGTTGACTCGGTTCTTGTGACGTTGGGTGACATTGCTCAGGTTTGGAGAAATGGAGAGGTCAAAAGAGTGAAATATCGACCAGTGTTGTGTTCAGGACAAAAAGATGGTCCAGTAAAGTGTGTAACAATGACATTGATGCTTACACTTCCCATGGACAGTATGGTTTCATCATTGAAGGATATGATCAGTGACGGCGACAAAGAAGAAGAGTATGCAGAGGAGGAGGAAGAAGATGGAGGAGCAAGAAGTGATGAGAGAAGGGCATTTAGGCCTTTTAGTTTCAAGGAGTACGCATGGAGAGTGTACCAAGAACGTCTCTTCTTCAGGGATCCACTTGACAGATACAGAATCAAATCTTTAAAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

371

Amino Acids

41.71

Weight (kDa)

4.82

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AciI CCGC 4 cut(s) 65, 222, 258, 410
AclWI GGATC 3 cut(s) 332, 1070, 1083
AcoI YGGCCR 1 cut(s) 407
AcuI CTGAAG 3 cut(s) 351, 557, 1054
AcyI GRCGYC 2 cut(s) 68, 456
AfaI GTAC 2 cut(s) 1037, 1052
AgsI TTSAA 5 cut(s) 239, 468, 585, 922, 1030
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 2 cut(s) 17, 367
AluI AGCT 2 cut(s) 17, 367
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 3 cut(s) 113, 161, 1067
AlwI GGATC 3 cut(s) 332, 1070, 1083
Ama87I CYCGRG 2 cut(s) 475, 744
AoxI GGCC 2 cut(s) 407, 1016
ApeKI GCWGC 1 cut(s) 335
ArsI GACNNNNNNTTYG 2 cut(s) 838, 870
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 854
AsuC2I CCSGG 1 cut(s) 589
AsuHPI GGTGA 2 cut(s) 11, 785
AvaI CYCGRG 2 cut(s) 475, 744
AvaII GGWCC 1 cut(s) 854
BamHI GGATCC 1 cut(s) 1075
BanI GGYRCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 545
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 347
BccI CCATC 5 cut(s) 200, 202, 448, 845, 974
BceAI ACGGC 3 cut(s) 78, 245, 955
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 1 cut(s) 321
BclI TGATCA 2 cut(s) 42, 930
BcnI CCSGG 1 cut(s) 589
BcoDI GTCTC 3 cut(s) 113, 161, 1067
BfaI CTAG 2 cut(s) 413, 521
BfoI RGCGCY 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 3 cut(s) 66, 336, 410
BlsI GCNGC 3 cut(s) 67, 337, 411
Bme1390I CCNGG 2 cut(s) 321, 589
Bme18I GGWCC 1 cut(s) 854
BmeT110I CYCGRG 2 cut(s) 475, 744
BmgT120I GGNCC 1 cut(s) 854
BmiI GGNNCC 3 cut(s) 58, 69, 1077
BmrFI CCNGG 2 cut(s) 321, 589
BmsI GCATC 3 cut(s) 418, 540, 873
BpiI GAAGAC 1 cut(s) 545
BplI GAGNNNNNCTC 2 cut(s) 332, 364
BpmI CTGGAG 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 783
BpuMI CCSGG 1 cut(s) 589
BsaHI GRCGYC 2 cut(s) 68, 456
BsaJI CCNNGG 4 cut(s) 60, 320, 616, 897
BsaWI WCCGGW 1 cut(s) 637
BsaXI ACNNNNNCTCC 6 cut(s) 122, 152, 173, 203, 284, 314
Bse1I ACTGG 3 cut(s) 141, 827, 857
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 4 cut(s) 60, 320, 616, 897
BseGI GGATG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 3 cut(s) 382, 482, 797
BseNI ACTGG 3 cut(s) 141, 827, 857
BseRI GAGGAG 4 cut(s) 63, 980, 983, 999
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 2 cut(s) 409, 1018
BshNI GGYRCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 2 cut(s) 475, 744
BsiSI CCGG 3 cut(s) 225, 589, 638
BslFI GGGAC 1 cut(s) 257
BsmAI GTCTC 3 cut(s) 113, 161, 1067
BsmBI CGTCTC 2 cut(s) 161, 1067
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 2 cut(s) 409, 1018
BsoBI CYCGRG 2 cut(s) 475, 744
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 5 cut(s) 42, 247, 324, 930, 1075
Bsp19I CCATGG 1 cut(s) 897
BspACI CCGC 4 cut(s) 65, 222, 258, 410
BspANI GGCC 2 cut(s) 409, 1018
BspCNI CTCAG 3 cut(s) 381, 483, 796
BspLI GGNNCC 3 cut(s) 58, 69, 1077
BspPI GGATC 3 cut(s) 332, 1070, 1083
BspT107I GGYRCC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 777
BsrI ACTGG 3 cut(s) 141, 827, 857
BssECI CCNNGG 4 cut(s) 60, 320, 616, 897
BssMI GATC 5 cut(s) 42, 247, 324, 930, 1075
BssNI GRCGYC 2 cut(s) 68, 456
BssT1I CCWWGG 2 cut(s) 616, 897
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 7 cut(s) 53, 155, 185, 464, 544, 681, 905
Bst6I CTCTTC 5 cut(s) 16, 207, 369, 948, 1070
BstACI GRCGYC 2 cut(s) 68, 456
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 4 cut(s) 361, 368, 491, 783
BstDSI CCRYGG 2 cut(s) 60, 897
BstEII GGTNACC 1 cut(s) 643
BstF5I GGATG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 5 cut(s) 45, 250, 327, 933, 1078
BstMAI GTCTC 3 cut(s) 113, 161, 1067
BstMBI GATC 5 cut(s) 42, 247, 324, 930, 1075
BstMWI GCNNNNNNNGC 4 cut(s) 65, 131, 335, 364
BstNI CCWGG 1 cut(s) 321
BstPI GGTNACC 1 cut(s) 643
BstSCI CCNGG 2 cut(s) 319, 587
BstV1I GCAGC 1 cut(s) 347
BstV2I GAAGAC 1 cut(s) 545
BstX2I RGATCY 1 cut(s) 1075
BstYI RGATCY 1 cut(s) 1075
BsuRI GGCC 2 cut(s) 409, 1018
BtgI CCRYGG 2 cut(s) 60, 897
BtsCI GGATG 1 cut(s) 192
BtsIMutI CAGTG 3 cut(s) 376, 834, 940
Cac8I GCNNGC 1 cut(s) 555
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 854
CseI GACGC 2 cut(s) 140, 464
Csp6I GTAC 2 cut(s) 1036, 1051
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 3 cut(s) 87, 898, 1041
CviQI GTAC 2 cut(s) 1036, 1051
DdeI CTNAG 4 cut(s) 361, 368, 491, 783
DinI GGCGCC 1 cut(s) 69
DpnI GATC 5 cut(s) 44, 249, 326, 932, 1077
DpnII GATC 5 cut(s) 42, 247, 324, 930, 1075
DraI TTTAAA 1 cut(s) 1107
EaeI YGGCCR 1 cut(s) 407
Eam1104I CTCTTC 5 cut(s) 16, 207, 369, 948, 1070
EarI CTCTTC 5 cut(s) 16, 207, 369, 948, 1070
EciI GGCGGA 2 cut(s) 211, 247
Ecl136II GAGCTC 1 cut(s) 367
Eco130I CCWWGG 2 cut(s) 616, 897
Eco147I AGGCCT 1 cut(s) 1018
Eco24I GRGCYC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 854
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 3 cut(s) 351, 557, 1054
Eco88I CYCGRG 2 cut(s) 475, 744
Eco91I GGTNACC 1 cut(s) 643
EcoICRI GAGCTC 1 cut(s) 367
EcoO65I GGTNACC 1 cut(s) 643
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 2 cut(s) 616, 897
EcoT38I GRGCYC 1 cut(s) 369
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 616, 897
Esp3I CGTCTC 2 cut(s) 161, 1067
FaeI CATG 3 cut(s) 90, 901, 1044
FaiI YATR 7 cut(s) 88, 579, 899, 908, 929, 960, 1042
FaqI GGGAC 1 cut(s) 257
FatI CATG 3 cut(s) 86, 897, 1040
FbaI TGATCA 2 cut(s) 42, 930
Fnu4HI GCNGC 3 cut(s) 66, 336, 410
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 3 cut(s) 66, 336, 410
FspBI CTAG 2 cut(s) 413, 521
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 66, 336, 410
GsuI CTGGAG 1 cut(s) 124
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 2 cut(s) 409, 1018
HapII CCGG 3 cut(s) 225, 589, 638
HgaI GACGC 2 cut(s) 140, 464
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 2 cut(s) 68, 456
Hin1II CATG 3 cut(s) 90, 901, 1044
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 3 cut(s) 130, 613, 751
HindII GTYRAC 3 cut(s) 130, 613, 751
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 3 cut(s) 225, 589, 638
HphI GGTGA 2 cut(s) 11, 785
Hpy166II GTNNAC 6 cut(s) 130, 510, 613, 677, 751, 1051
Hpy188III TCNNGA 3 cut(s) 521, 626, 840
Hpy8I GTNNAC 6 cut(s) 130, 510, 613, 677, 751, 1051
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 4 cut(s) 207, 376, 916, 999
HpyCH4III ACNGT 7 cut(s) 53, 155, 185, 464, 544, 681, 905
HpyCH4IV ACGT 2 cut(s) 767, 1060
HpyCH4V TGCA 2 cut(s) 563, 962
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 131, 335, 364
HpyF3I CTNAG 4 cut(s) 361, 368, 491, 783
HpySE526I ACGT 2 cut(s) 767, 1060
Hsp92I GRCGYC 2 cut(s) 68, 456
Hsp92II CATG 3 cut(s) 90, 901, 1044
HspAI GCGC 1 cut(s) 68
KasI GGCGCC 1 cut(s) 67
Ksp22I TGATCA 2 cut(s) 42, 930
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 5 cut(s) 42, 247, 324, 930, 1075
LmnI GCTCC 4 cut(s) 56, 194, 504, 986
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 3 cut(s) 418, 540, 873
MaeI CTAG 2 cut(s) 413, 521
MaeII ACGT 2 cut(s) 767, 1060
MaeIII GTNAC 6 cut(s) 262, 643, 763, 773, 868, 935
MalI GATC 5 cut(s) 44, 249, 326, 932, 1077
MboI GATC 5 cut(s) 42, 247, 324, 930, 1075
MflI RGATCY 1 cut(s) 1075
MhlI GDGCHC 1 cut(s) 369
Mly113I GGCGCC 1 cut(s) 68
MlyI GAGTC 7 cut(s) 293, 341, 350, 467, 511, 728, 746
MmeI TCCRAC 3 cut(s) 101, 307, 511
MseI TTAA 5 cut(s) 291, 485, 594, 612, 1106
MspI CCGG 3 cut(s) 225, 589, 638
MspR9I CCNGG 2 cut(s) 321, 589
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 4 cut(s) 65, 131, 335, 364
NarI GGCGCC 1 cut(s) 68
NciI CCSGG 1 cut(s) 589
NcoI CCATGG 1 cut(s) 897
NdeII GATC 5 cut(s) 42, 247, 324, 930, 1075
NlaIII CATG 3 cut(s) 90, 901, 1044
NlaIV GGNNCC 3 cut(s) 58, 69, 1077
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 4 cut(s) 262, 763, 773, 935
PaeR7I CTCGAG 1 cut(s) 475
PceI AGGCCT 1 cut(s) 1018
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 3 cut(s) 386, 581, 1095
PflFI GACNNNGTC 1 cut(s) 82
PkrI GCNGC 3 cut(s) 67, 337, 411
PleI GAGTC 7 cut(s) 293, 341, 349, 467, 511, 727, 746
PluTI GGCGCC 1 cut(s) 71
PpsI GAGTC 7 cut(s) 293, 341, 349, 467, 511, 727, 746
Psp124BI GAGCTC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 319
PspEI GGTNACC 1 cut(s) 643
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 3 cut(s) 58, 69, 1077
PspPI GGNCC 1 cut(s) 854
PspXI VCTCGAGB 1 cut(s) 475
PsuI RGATCY 1 cut(s) 1075
PsyI GACNNNGTC 1 cut(s) 82
RsaI GTAC 2 cut(s) 1037, 1052
RsaNI GTAC 2 cut(s) 1036, 1051
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 5 cut(s) 291, 485, 594, 612, 1106
SatI GCNGC 3 cut(s) 66, 336, 410
Sau3AI GATC 5 cut(s) 42, 247, 324, 930, 1075
Sau96I GGNCC 1 cut(s) 854
SchI GAGTC 7 cut(s) 293, 341, 350, 467, 511, 728, 746
ScrFI CCNGG 2 cut(s) 321, 589
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 3 cut(s) 418, 540, 873
SfoI GGCGCC 1 cut(s) 69
Sfr274I CTCGAG 1 cut(s) 475
SinI GGWCC 1 cut(s) 854
SlaI CTCGAG 1 cut(s) 475
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
SseBI AGGCCT 1 cut(s) 1018
SsiI CCGC 4 cut(s) 65, 222, 258, 410
SspDI GGCGCC 1 cut(s) 67
SspMI CTAG 2 cut(s) 413, 521
SstI GAGCTC 1 cut(s) 369
StuI AGGCCT 1 cut(s) 1018
StyD4I CCNGG 2 cut(s) 319, 587
StyI CCWWGG 2 cut(s) 616, 897
TaaI ACNGT 7 cut(s) 53, 155, 185, 464, 544, 681, 905
TaiI ACGT 2 cut(s) 770, 1063
TaqI TCGA 2 cut(s) 476, 823
TauI GCSGC 2 cut(s) 68, 412
TfiI GAWTC 3 cut(s) 386, 581, 1095
Tru1I TTAA 5 cut(s) 291, 485, 594, 612, 1106
Tru9I TTAA 5 cut(s) 291, 485, 594, 612, 1106
TscAI CASTG 3 cut(s) 376, 834, 940
TseFI GTSAC 4 cut(s) 262, 763, 773, 935
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 4 cut(s) 262, 763, 773, 935
TspDTI ATGAA 2 cut(s) 648, 903
TspGWI ACGGA 3 cut(s) 491, 666, 724
TspRI CASTG 3 cut(s) 376, 834, 940
Tth111I GACNNNGTC 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 854
XbaI TCTAGA 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XhoI CTCGAG 1 cut(s) 475
XspI CTAG 2 cut(s) 413, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.